Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0018070 | OGI:11063750 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:21270883-21275302 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaataacctgttgcaacgcacggttattttgctagtagtaaagaaaaactgtatggagtatcttctctgcactgatatagctaaatgtgctacctgtcatcagaggagaacataaaggagatcactctggggaaataaacttacacaattttattttaaagctcttaattcataaaactcaagaagaaatttattgctatgttgtgtagttgccagcagtgtagttgccagcagtattatgagaaacaatagagaaagatctctgctaactgctaaggaatcaccaccatccctattctgaatgtaaaaaaactgctaggggcttattccttatgacaaactgacgctaaacagctgaagcacaatgcaactatgccactatgttagtaaaaaaaagtaagaattaaataaatcggtgcacttgtacctcatgttgccagttttgatactccagcaaaacattttgattaagaaaaagcatagaatttgcttcagattcaataccttgtatggcacaatccagttcttttcccatggtagtaggcatctgcaaatagagtggaacaagtgaaaccatcaacagatgggtgctaagtgctagcatatgctgataagtgataggttaagtggtttgttaggacaaagtaaatgccagcacatttccaattattaactcacttgagaaaacagaataagaaatccagatttaaaataacaaacaatagattattaaggggcaccataaatcctgaacaatcaaacaaatagctgggatttctatggagaactccaacaaataaaggaactaagattggcagaattgttttagatgagaagacactaacatgctggagcctaggcgcttcagacgtgattgagatgcacaaaggctgttgggatataatgctgttgttactgtagttaccacaatcatgatctgtgggtccctggtacatgtccgtggtatggaatcccccactagacaaacataagatatggggtgtactctcctatcatgaatccatgctgaggttcatgaacccaatgccacaaagtttcatagaatatcaaaccacagccttgaatcaaacccaacaatgtcggtgaactcttcctgattgccaatcacagcacgtgctggcagattgctggcaaaccccaaatcagatcaccacatcatgcaatctgattattgtttcgatagtgtactgcaaatatggtaactatggtttctttaattactataattccttttaaggttccatgtaatcaaatgcaaggaatatgaacagattaagaagcttagtttgtgaaagtaactagtttctcacaagcatacctttgtatcaagctcaatagaagccatattctcttgtgtgcaactccgtttgagaacaacggctctaataagcaaatcctgagagaatttaaataaaattaaaccaaacacaaatttgatgattaccttgaagattaataaaatatgggttgtcagcaaaagaacttccaggctctgctaaccttgaatgttagcactacttgaaatcgctgatcaaactttgccacctgatcaacaaactttattttgctggactccgtaattttctttttatatatgctcaccagcattattcttttcctaactagaggtgcaaagacaagatacaagtagaagaacagcaaaagttatcataccaacatgcttctttatttcgtcttgcttccttttctcatgcagcatctcctcctggaaatatggcaataaaaatatgagcgctataagaaatggacattaattatatccatatctagttctgtgaatagaatttaaacctatgaaacatttatcctgtgaaattttgctgcttcatcttctaattgactcggtgtcgtcaatagcatctttaaggcttcacctgtaccttcaatgtctttcatgtgcttttgtttttgagatcgaagcctttcgatgtcaccactcaccaacatctaaatctgcaccagtaagctaataagcattaggcaccagcagatcagaatgcacaaaccgagtagctaacaagcattaaggttgagactggcacacatactgcccataaaaaaaggggatggatcacatcatctacaaatgctgataaatggccactatatcttgatctagaccaccggtagtggttatttggggttcaaaagtcagacatgcctaacttaggtacatcatctgctctgttatgtgtttcatctgttcctatatactatatagacataagaaaaaaaaaaggagaaacgggagagaacacacaattgaggattcaggcgttatccaatgcagcttgatatagatttatgaagtggacataagcagtcataccgaatgatcgaaattagcgcgactaattaaaacatctttcacggcaggaggagcttcaaaaacttgatcaagtcgtgagtagatgccaacttcctgcatctgcaaaaaaaataacaatactaaataatttatcttaccattcttttacatatggcatgttttgtggagtaagagggaacagaggctgagaaagctttaagattgatgaagccaccagaagagaacggctgtagggtccttcaaatgaatatttaggaaaaacaatagatgatacgtcgtgtaatctagcatcaaatctgaacgcggaacttacaatggcagttaatttgacaaataataggaataggaacaactaggaaattaatgcggaacaaaaaaaatagggcacattgaaaaggagtaacaaatgacaaatatcgatgctctcaaatggtaaatgcccttctttttagactaaattgcttaggcaatgcctgctgacctccatcctgagtaacaaatgactgacatataaaacaaaatggcagttaatttgtttacagatgtaatattttccataggaggaaaaaaaatcagatcgtggtggttcatggtttccaagtcaatgacgacaacaaacaagggactttgttctagaaatagttcacatagatgccatcctactggaaaacaaccatgtcctgtaactggaggataaatttcccctttacatatcttgactatgagcaagaaaaagaaaacacaacatgcattggcacaacagaaacagcaggcactggtagaatgtgttgtcctggctttccatattttcattgaaatgtcaaaatcaagtaaggcataagtaagcatcacaaaatactatcataatatttgtaccttccatatatagtttgggacatggccttccaagtatgaagcgtgagccttatcctgaatatttacctgagaatagtacaaagaacaagacaatggttgtacttgtatcatatgcaaagcaaacaatggtagacaaacatgcatgtaaacaaacctcaaggagaacaggtccgtaaacttcagtcctgaacttgtatctgttatcttgcacccagttgtatgcttctttgattttttttttcaacaccacaacatctcactctttggagaatcttatagtttccatttgcttcaatctgtgataaagcaacatgtagccgagtcttggatgaaatagaaattaataggcaaaacaggttacctatcagagcacttcctcagattctctctctctctcttcttttttttttagccgggacggcgaagaatgccgaccgatgtatattaaggaaaagggaaaaactgtacaaatgcaatacgtcagagcaccgccattacaacaaaaagcaaattacaaagtctgtaatctctctaaagctggcgctgcagcaacattcaacgaggtaactagccctgctgatttccaagtttcccattcatcacacatggtcgcacacagctgcgtgaccgacgaggccgttccctcaaaaacccgtgcgtttcgctctttccaaatcaaccatgtaacaaggatgaccccggcgtcgaacgtcttgcgattgatcttcgcaacagtttgccgggcagcgagccaccaaccggcaaagtccgaggacggcggcgagcaagagaggctcaaacgagcctgaacctgcacccaaacttgctgcgagaaggtgcaggcttggaagatgtgttggcaggattctccatccttagaacaaaggtgacaaattggtgcgagcttccagcctcggcgctgcaggttatcagctgttaaacaggcattgcggaccgcaaggaacatgaagaacttgcatctcgctggcgtgcgggatttccagataatcttgctgagtgggcaggatgttctaccagccgaaaggatagagtaggcagactgcaccgaaaagtcgccgttaggtgccgccttccagatcatagagtcagtacttccgaggtcgagagaaatcccggcgatcacgtcccagagcgcaaggtattcccccat
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| CDS seq | atgggggaataccttgcgctctgggacgtgatcgccgggatttctctcgacctcggaagtactgactctatgatctggaaggcggcacctaacggcgacttttcggtgcagtctgcctactctatcctttcggctggtagaacatcctgcccactcagcaagattatctggaaatcccgcacgccagcgagatgcaagttcttcatgttccttgcggtaaatattcaggataaggctcacgcttcatacttggaaggccatgtcccaaactatatatggaagatgcaggaagttggcatctactcacgacttgatcaagtttttgaagctcctcctgccgtgaaagatgttttaattagtcgcgctaatttcgatcattcgcttactggtgcagatttagatgttgttaggaaaagaataatgctggtgagcatatataaaaagaaaattacggagtccagcaaaataaagtttgttgatcaggtggcaaagtttgatcagcgatttcaagtagtgctaacattcaaggatttgcttattagagccgttgttctcaaacggagttgcacacaagagaatatggcttctattgagcttgatacaaagatgcctactaccatgggaaaagaactggattgtgccatacaaggtattgaatctgaagcaaattctatgctttttcttaatcaaaatgttttgctggagtatcaaaactggcaacatgaggttatttaa
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| Protein seq | MGEYLALWDVIAGISLDLGSTDSMIWKAAPNGDFSVQSAYSILSAGRTSCPLSKIIWKSRTPARCKFFMFLAVNIQDKAHASYLEGHVPNYIWKMQEVGIYSRLDQVFEAPPAVKDVLISRANFDHSLTGADLDVVRKRIMLVSIYKKKITESSKIKFVDQVAKFDQRFQVVLTFKDLLIRAVVLKRSCTQENMASIELDTKMPTTMGKELDCAIQGIESEANSMLFLNQNVLLEYQNWQHEVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0018070 | OsCMeo_11g0018070.01 | Chr11 | 21270883 | 21275302 | - | NAM | ||
| CDS seq | atgggggaataccttgcgctctgggacgtgatcgccgggatttctctcgacctcggaagtactgactctatgatctggaaggcggcacctaacggcgacttttcggtgcagtctgcctactctatcctttcggctggtagaacatcctgcccactcagcaagattatctggaaatcccgcacgccagcgagatgcaagttcttcatgttccttgcggtaaatattcaggataaggctcacgcttcatacttggaaggccatgtcccaaactatatatggaagatgcaggaagttggcatctactcacgacttgatcaagtttttgaagctcctcctgccgtgaaagatgttttaattagtcgcgctaatttcgatcattcgcttactggtgcagatttagatgttgttaggaaaagaataatgctggtgagcatatataaaaagaaaattacggagtccagcaaaataaagtttgttgatcaggtggcaaagtttgatcagcgatttcaagtagtgctaacattcaaggatttgcttattagagccgttgttctcaaacggagttgcacacaagagaatatggcttctattgagcttgatacaaagatgcctactaccatgggaaaagaactggattgtgccatacaaggtattgaatctgaagcaaattctatgctttttcttaatcaaaatgttttgctggagtatcaaaactggcaacatgaggttatttaa
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| Protein seq | MGEYLALWDVIAGISLDLGSTDSMIWKAAPNGDFSVQSAYSILSAGRTSCPLSKIIWKSRTPARCKFFMFLAVNIQDKAHASYLEGHVPNYIWKMQEVGIYSRLDQVFEAPPAVKDVLISRANFDHSLTGADLDVVRKRIMLVSIYKKKITESSKIKFVDQVAKFDQRFQVVLTFKDLLIRAVVLKRSCTQENMASIELDTKMPTTMGKELDCAIQGIESEANSMLFLNQNVLLEYQNWQHEVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018180 | SBH | 0.0 | 0.000000 | 0.360600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017610 | SBH | 0.000000 | 0.123532 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018040 | SBH | 0.000000 | 0.660079 | 2.292700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0336900 | RBH | 0.0055675 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018510 | SBH | 0.0 | 0.000000 | 0.268020 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0347200 | SBH | 1.001507 | 1.1203305 | 4.9379005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018320 | SBH | 0.021285 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017780 | SBH | 0.000000 | 0.0 | 0.240805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017910 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017900 | SBH | 0.024754 | 0.0 | 0.093446 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018190 | SBH | 0.0 | 0.0 | 0.0 |
