Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0014160 | OGI:11020490 | 5/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:16725317-16727041 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagtatactgtagtagctatcgcccgttgctggtgtcatattatacgcttctgttataatttacattgatttgttccctttggttcacgacaacagctgctacatgactaagtgattgagtagtagctatcactcctttttttcgccgggaaggccgaaggaggccatccgagatattaagaaggaataaagttacaagaaaaaactcgacagaggctgtcgaggtcggaggtgcatcgaaatgcacaaccaaagccacatgctaatcacacaagcacaacccactcagagaaaaacctagcaccgagacgacccccgctatgcgtggccgatcgccgccaggccaacgacaacaccacaaagacgagactctaaaagcgatgcccccaaggaggtcacgacatcaaggatgccgccatcgcccatctaaggagatgtggttttcacctagagaaaactcgccaagggagaaaggtatccttgccagcgccctcaaaggggttacgacgcccaaaagcgtagccgctgccagcccgatgaatcatcaggcgaggctttcacccggaaacctttcaaccttgcttgaggtttgtcgctcatcaactcaggaaccacctcacaagcagatcagcacgaggcctccaccacaccgcgccggcgcccctccaccggccgaccaccacacttgctgcatagagctgccgccaccctgggaactggcccagacctcctccgtcccgccacccgccggcctccttgccagctttggccgaaggagaacccggaattggacggcgtcgcgttggcggtctgagctcccctcgctaaccggctgccgcctcaatccaatatagaaactccccacagagaaggggaggagctccaggaagggcgagggtgcaggccggcagcgaggaagacaacccactgccgccagctcccttagcactgccatcactcccttcatgccctgcctcagggcctacgagccgccatgcccaccccaacgccaccaccgctgcaccagaaggccagaccgccgccgtccgaccgcccatgccgcgccgcgccgaccacgggccgatctggccgcgccctccgggagggccgccgccgccgccaccgccgccgccgtctatccgcccaggccgccgccggatgcagttggccccgccctccgtgagggctgccgccgccgcgccgacccccggccaccgccccgtgctggaccacggtgtcccacggccgcccgcgtcgagctgcgacacgcgcgctgcctccgagcccggccgtcgcgccgggggtagagcggccagatccggccaccgccggatccgccgccgtcgccaggccgcgccgcgccaccaccccgcgcttgcccgcgacgccccgcggccgaccgcgcgccgccggcgagccctggccgacgcgcctcccgatccggacgtggggcggccagatccggccaaagaagtgccggatccgccgccaccccgagctgccccgccgtcgtcgcctccggccgtggtggtagacgtcgtcagcccaactccgtcctcctcgtgccaaggaaagggttgctgtagtggaaggcctcgccgccgccttcccggctcgccgttgacgagctccggcggcggcgaggtgaagagagaagagggggagtggcggcgcgggcggctagggtttcgccccccgagccgcccgcgcgagagcgacgcgggg
More
|
||||||||||
| CDS seq | atgaagggagtgatggcagtgctaagggagctggcggcagtgggttgtcttcctcgctgccggcctgcaccctcgcccttcctggagctcctccccttctctgtggggagtttctatattggattgaggcggcagccggttagcgaggggagctcagaccgccaacgcgacgccgtccaattccgggttctccttcggccaaagctggcaaggaggccggcgggtggcgggacggaggaggtctgggccagttcccagggtggcggcagctctatgcagcaagtgtggtggtcggccggtggaggggcgccggcgcggtgtggtggaggcctcgtgctgatctgcttgtga |
||||||||||
| Protein seq | MKGVMAVLRELAAVGCLPRCRPAPSPFLELLPFSVGSFYIGLRRQPVSEGSSDRQRDAVQFRVLLRPKLARRPAGGGTEEVWASSQGGGSSMQQVWWSAGGGAPARCGGGLVLICL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0014160 | OsCMeo_11g0014160.01 | Chr11 | 16725317 | 16727041 | - | NAM | ||
| CDS seq | atgaagggagtgatggcagtgctaagggagctggcggcagtgggttgtcttcctcgctgccggcctgcaccctcgcccttcctggagctcctccccttctctgtggggagtttctatattggattgaggcggcagccggttagcgaggggagctcagaccgccaacgcgacgccgtccaattccgggttctccttcggccaaagctggcaaggaggccggcgggtggcgggacggaggaggtctgggccagttcccagggtggcggcagctctatgcagcaagtgtggtggtcggccggtggaggggcgccggcgcggtgtggtggaggcctcgtgctgatctgcttgtga
More
|
|||||||
| Protein seq | MKGVMAVLRELAAVGCLPRCRPAPSPFLELLPFSVGSFYIGLRRQPVSEGSSDRQRDAVQFRVLLRPKLARRPAGGGTEEVWASSQGGGSSMQQVWWSAGGGAPARCGGGLVLICL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014240 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013550 | SBH | 0.0 | 0.0 | 2.264210 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012460 | SBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013060 | SBH | 0.0 | 0.496110 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012680 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013230 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012600 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012610 | SBH | 0.0 | 0.0 | 1.598603 |
