Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0013320 | OGI:11045930 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:15255098-15259622 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagcagaaatggtgacattcatcattcacagggttcagcttgcctggtgaagtcccattagttttgaagtatggctcagtattgctgcaagattccctagaggtttggcccatggaacagagatctaaggtcctttcttgatctgcctttggacgtctaaaaaccggaaccggccttagggagccggcagccaaagccagtgctgcagcatcctctgtaggctgagcaacctccatattctgcatctgaccaacctctcctgtattaacaaatgagaccttgggccatctaggatggttcttcactgtttccttccacttcttttttgtttcttcgctaattcttttgtcaagagcaacctccttgaggcattcggggccgatgtactggatgttgatgccacatagcccatttagatccttacagagcagccggaatgactccagatttggcagagccccctgttggatttctggctcggtcatggtttgcaccatgatgcacaagcgtcgtaggcttttgagtggaccctgtcctatgacaaacttttccagattaggtgtaatcagtttgaggtaatgcaaacagcgaacattgcttagagcagcaagaacatccctgttgagcttatcagaggatgatagacacagctcagtaagacctttcagcaaggttacaaatggaggtaatatgtttattttgccttttagcttcagagagcttaagtagcaggaatcttccagggaaaacttcagcatattctcttggtcttggaagcaccccccaaaattcagagaaagcgagcggacatcgttcatattggtgcccctctggatgaaaacttgaatggcctttgaaaggtgaacagtgttgctgctagaattggaaggggtctcgctctcgcaccatattttaaccttggccaagtttttcatatgatcaatgagttgaggaaatccttggtcattattggcaaaaaatcccgctagtgtctccagcttacttttctcagacagatacttctgtagcttgctaattttctggcctacatcttgaagtttgaaatttccaaatagatgtgtcaagcatggcagcttgatgacttgtatgggcagaacttttatctttgttcttcgtacatcgagtgtctccaaaaatttcagttttgtgatctcctttgggagcattgtaacagtgcccccaaggcttaaatacctgagcagcaacagcttgcatatcttcctgagatgttcatctttcaaattttcacattcttcaagatccaaaactctcagtagttcataactggagaattctaaaacagagtcttctgcctctccgaagattgtcaaagaccgaacatgagataaatcaatgtctgagttcattctgccccttctggtgctgttatgttgcacagtaaggcaacgtattttgtcaggcaggcaagcttgatcatatagcaacgtaatgaagtcatcgcacatggacttatgcaggatgaactcaagcatcatgccgtgagtttggcatgtcttcacctcagtgttactgctcgtagcaacaggctgaatgatgctccggttgatcagctcgttgaagtagtctgtagcaacatccagagaacttcggagagggtctgcctcaacaagcccttcagctgaccatcgccttatcagttttcctctcctgaccggatggccactggggaaaataccaaaatagagcaagcaggccttgataacatggccaggaaggctggtatagttgtgaacaagtacatgcttcattctttctaaagtatcctctctttccagatgcatacccagattgccacacaactttgcatattcttgtggtagctgttgacctttacttttcaagaattgggctgttgatacaagggcaagtggtaaaccatcacatttagtactcagcactgtttctgaaccaggtgggtagtcaccccatgatgcttctcttaagaatagttttcttgagtattttttgtcaagagtgctcatcatatatacatgaccattaccagagctgcaggcatttgctatggaatggatggccgtcgtcaccagcactatgctgcttgatcctgtatctacagggaaagcatcttttatagtactgttccaatattccctctggatgtcatcaattacaatgaagaacctatagagatgtatttagaaataaggtaaatggatcagtgcttagtagacatggtaatagcagtttttttcttattattattagtcatgtaaacttacataatccatagcttaaacttaccacacatgtaggctgcatttgcaacttttggtttgtcccttttcttttgtcttacatgtgttcatctaggttatttactctagatggttaggcatattcttttctattagttctcggaaccatgaaatagtgttactaataattgtctaataaggccagacattgttgtgctgattgcaccaaatattcttacattgttaatttgtccttttccctatgcttaattatttaatcttcactctcgatgtgcaatattcatgtcatcttaggtaccttggaattagtccatgaacagattcaactttaatttgtttttttgccatcgataagtcatttctgcagattgcaaccttaatttgtgttttagccactgataagtcatttcagcagattgcttcttaatttgatttgtgttttgccattatgagtccttttttttttcatactggttttcaagcattgatgttgtaagttgtaactagtagcacggacagtggtctgagtaagatatgcatcgaaaacggatgcaagtcacaaagaagtgaatagcctaatttgtagagctctttactgctctttaggagctgtgacattgtctattgttcacagggagatagtgttaaaacaatctccttaaggaccatgaaaacactctaatttttatggttgtcgcttgatgaagctgtgtaagggaaacaaataacagtagttgtaacaatagaatgagaaatttaatatactgagctatatgtataatattggattgtatatattattctcaattctctaccaggatgggaaagtgtcctgaacattatggagtattttagaaaccaaagagacgtttccgtgtgcagaatgctatacacgggatggatagacttcccgagtgtacatttgtgacatatgaaaagatgggtggcaacggacacacttcggcaggaacatgaactttcccgtgtttgtgggcactcgggaaactttccatcttgtggtagtgactttttcattcctgtgtaatttgcagcagcatcagattatcatattgaagaggtggtatttgccctatgttaaaatgcagacaaacgctttggtagtaatgttgagtcatgttataatgacaacatgagaagaaagtgagcacgtggatttttttattatatagttaatggtactcgtcgagtaaaatgtagtcaatttttatttgattttttggctatgaataatttatcagatgcctggtttgtaaagaaacgttatgcatatatccgccttcaaaaagtactatcataattagattttataaaactgttctagtaaaaatattataaccaaagttttaaagtttgactaaatattgtcctaaaccttcacatattcattacaggagagaataccctcccagaaatatgaataatgaattctcatttcttacctcttggagtggaggcattttttcagacttgtgatgagcttgctgacatcgtcctcctgtgcttgcgattggaagccaagctggcatagtatctccttgaggacgtccctcgcactcttccctgctgcggaaacccaggcctgtggttcgaattgtgtgcaaatggtggtgttctcatagatttgcttggcgaggagggtcttccctaacccgccaaacccgacaagggagatgaccttgagctgattgggctggctttgtgtttccatgatcagctcaagaatctcatcccttggcccgtccattcccacagggacggtgtcagctgtggggatatgtgtcgtctcaaatgacgacatggtcccggaggtgcttgcttggcaatcaccattgccgttgccagcggttgtgtagtttgctctcagcttagacagatcctccgatttcttccggagcttctggatcacggtggcaaacttggtgcggacggccattgtggcgagcctatggccacttgtcatacggtgcatgaagcggtcgatgcagtcctccatgtcgtaggccagctcgcgcgcgccatggatccaagccccctgcagagggccaccgtggttcatctgcccgcgttcgtgctcatcgatcaccgcgccgatcatccggagctcgttccggatgtaccgtatgtcgtgttccaggttccgccgcagctcatggttctcttgcaagaaggtgtagagcttcggccctagcatgttcagaagagtgctcagcacagcagtctccat
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| CDS seq | atggagactgctgtgctgagcactcttctgaacatgctagggccgaagctctacaccttcttgcaagagaaccatgagctgcggcggaacctggaacacgacatacggtacatccggaacgagctccggatgatcggcgcggtgatcgatgagcacgaacgcgggcagatgaaccacggtggccctctgcagggggcttggatccatggcgcgcgcgagctggcctacgacatggaggactgcatcgaccgcttcatgcaccgtatgacaagtggccataggctcgccacaatggccgtccgcaccaagtttgccaccgtgatccagaagctccggaagaaatcggaggatctgtctaagctgagagcaaactacacaaccgctggcaacggcaatggtgattgccaagcaagcacctccgggaccatgtcgtcatttgagacgacacatatccccacagctgacaccgtccctgtgggaatggacgggccaagggatgagattcttgagctgatcatggaaacacaaagccagcccaatcagctcaaggtcatctcccttgtcgggtttggcgggttagggaagaccctcctcgccaagcaaatctatgagaacaccaccatttgcacacaattcgaaccacaggcctgggtttccgcagcagggaagagtgcgagggacgtcctcaaggagatactatgccagcttggcttccaatcgcaagcacaggaggacgatgttgcaatctgcagaaatgacttatcgatggcaaaaaaacaaattaaagttgaatctgttcatggactaattccaaggttcttcattgtaattgatgacatccagagggaatattggaacagtactataaaagatgctttccctgtagatacaggatcaagcagcatagtgctggtgacgacggccatccattccatagcaaatgcctgcagctctggtaatggtcatgtatatatgatgagcactcttgacaaaaaatactcaagaaaactattcttaagagaagcatcatggggtgactacccacctggttcagaaacagtgctgagtactaaatgtgatggtttaccacttgcccttgtatcaacagcccaattcttgaaaagtaaaggtcaacagctaccacaagaatatgcaaagttgtgtggcaatctggcttgcctgcctgacaaaatacgttgccttactgtgcaacataacagcaccagaaggggcagaatgaactcagacattgatttatctcatgttcggtctttgacaatcttcggagaggcagaagactctgttttagaattctccagttatgaactactgagagttttggatcttgaagaatgtgaaaatttgaaagatgaacatctcaggaagatatgcaagctgttgctgctcaggtatttaagccttgggggcactgttacaatgctcccaaaggagatcacaaaactgaaatttttggagacactcgatgtacgaagaacaaagataaaagttctgcccatacaagtcatcaagctgccatgcttgacacatctatttggaaatttcaaacttcaagatgtaggccagaaaattagcaagctacagaagtatctgtctgagaaaagtaagctggagacactagcgggattttttgccaataatgaccaaggatttcctcaactcattgatcatatgaaaaacttggccaaggttaaaatatggtgcgagagcgagaccccttccaattctagcagcaacactgttcacctttcaaaggccattcaagttttcatccagaggggcaccaatatgaacgatgtccgctcgctttctctgaattttggggggtgcttccaagaccaagagaatatgctgaagttttccctggaagattcctgctacttaagctctctgaagctaaaaggcaaaataaacatattacctccatttgtaaccttgctgaaaggtcttactgagctgtgtctatcatcctctgataagctcaacagggatgttcttgctgctctaagcaatgttcgctgtttgcattacctcaaactgattacacctaatctggaaaagtttgtcataggacagggtccactcaaaagcctacgacgcttgtgcatcatggtgcaaaccatgaccgagccagaaatccaacagggggctctgccaaatctggagtcattccggctgctctgtaaggatctaaatgggctatgtggcatcaacatccagtacatcggccccgaatgcctcaaggaggttgctcttgacaaaagaattagcgaagaaacaaaaaagaagtggaaggaaacagtgaagaaccatcctagatggcccaaggtctcatttgttaatacaggagaggttggtcagatgcagaatatggaggttgctcagcctacagaggatgctgcagcactggctttggctgccggctccctaaggccggttccggtttttagacgtccaaaggcagatcaagaaaggaccttagatctctgttccatgggccaaacctctagggaatcttgcagcaatactgagccatacttcaaaactaatgggacttcaccaggcaagctgaaccctgtgaatgatgaatgtcaccatttctgctag
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| Protein seq | METAVLSTLLNMLGPKLYTFLQENHELRRNLEHDIRYIRNELRMIGAVIDEHERGQMNHGGPLQGAWIHGARELAYDMEDCIDRFMHRMTSGHRLATMAVRTKFATVIQKLRKKSEDLSKLRANYTTAGNGNGDCQASTSGTMSSFETTHIPTADTVPVGMDGPRDEILELIMETQSQPNQLKVISLVGFGGLGKTLLAKQIYENTTICTQFEPQAWVSAAGKSARDVLKEILCQLGFQSQAQEDDVAICRNDLSMAKKQIKVESVHGLIPRFFIVIDDIQREYWNSTIKDAFPVDTGSSSIVLVTTAIHSIANACSSGNGHVYMMSTLDKKYSRKLFLREASWGDYPPGSETVLSTKCDGLPLALVSTAQFLKSKGQQLPQEYAKLCGNLACLPDKIRCLTVQHNSTRRGRMNSDIDLSHVRSLTIFGEAEDSVLEFSSYELLRVLDLEECENLKDEHLRKICKLLLLRYLSLGGTVTMLPKEITKLKFLETLDVRRTKIKVLPIQVIKLPCLTHLFGNFKLQDVGQKISKLQKYLSEKSKLETLAGFFANNDQGFPQLIDHMKNLAKVKIWCESETPSNSSSNTVHLSKAIQVFIQRGTNMNDVRSLSLNFGGCFQDQENMLKFSLEDSCYLSSLKLKGKINILPPFVTLLKGLTELCLSSSDKLNRDVLAALSNVRCLHYLKLITPNLEKFVIGQGPLKSLRRLCIMVQTMTEPEIQQGALPNLESFRLLCKDLNGLCGINIQYIGPECLKEVALDKRISEETKKKWKETVKNHPRWPKVSFVNTGEVGQMQNMEVAQPTEDAAALALAAGSLRPVPVFRRPKADQERTLDLCSMGQTSRESCSNTEPYFKTNGTSPGKLNPVNDECHHFC |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0013320 | OsCMeo_11g0013320.01 | Chr11 | 15255098 | 15259622 | - | NAM | ||
| CDS seq | atggagactgctgtgctgagcactcttctgaacatgctagggccgaagctctacaccttcttgcaagagaaccatgagctgcggcggaacctggaacacgacatacggtacatccggaacgagctccggatgatcggcgcggtgatcgatgagcacgaacgcgggcagatgaaccacggtggccctctgcagggggcttggatccatggcgcgcgcgagctggcctacgacatggaggactgcatcgaccgcttcatgcaccgtatgacaagtggccataggctcgccacaatggccgtccgcaccaagtttgccaccgtgatccagaagctccggaagaaatcggaggatctgtctaagctgagagcaaactacacaaccgctggcaacggcaatggtgattgccaagcaagcacctccgggaccatgtcgtcatttgagacgacacatatccccacagctgacaccgtccctgtgggaatggacgggccaagggatgagattcttgagctgatcatggaaacacaaagccagcccaatcagctcaaggtcatctcccttgtcgggtttggcgggttagggaagaccctcctcgccaagcaaatctatgagaacaccaccatttgcacacaattcgaaccacaggcctgggtttccgcagcagggaagagtgcgagggacgtcctcaaggagatactatgccagcttggcttccaatcgcaagcacaggaggacgatgttgcaatctgcagaaatgacttatcgatggcaaaaaaacaaattaaagttgaatctgttcatggactaattccaaggttcttcattgtaattgatgacatccagagggaatattggaacagtactataaaagatgctttccctgtagatacaggatcaagcagcatagtgctggtgacgacggccatccattccatagcaaatgcctgcagctctggtaatggtcatgtatatatgatgagcactcttgacaaaaaatactcaagaaaactattcttaagagaagcatcatggggtgactacccacctggttcagaaacagtgctgagtactaaatgtgatggtttaccacttgcccttgtatcaacagcccaattcttgaaaagtaaaggtcaacagctaccacaagaatatgcaaagttgtgtggcaatctggcttgcctgcctgacaaaatacgttgccttactgtgcaacataacagcaccagaaggggcagaatgaactcagacattgatttatctcatgttcggtctttgacaatcttcggagaggcagaagactctgttttagaattctccagttatgaactactgagagttttggatcttgaagaatgtgaaaatttgaaagatgaacatctcaggaagatatgcaagctgttgctgctcaggtatttaagccttgggggcactgttacaatgctcccaaaggagatcacaaaactgaaatttttggagacactcgatgtacgaagaacaaagataaaagttctgcccatacaagtcatcaagctgccatgcttgacacatctatttggaaatttcaaacttcaagatgtaggccagaaaattagcaagctacagaagtatctgtctgagaaaagtaagctggagacactagcgggattttttgccaataatgaccaaggatttcctcaactcattgatcatatgaaaaacttggccaaggttaaaatatggtgcgagagcgagaccccttccaattctagcagcaacactgttcacctttcaaaggccattcaagttttcatccagaggggcaccaatatgaacgatgtccgctcgctttctctgaattttggggggtgcttccaagaccaagagaatatgctgaagttttccctggaagattcctgctacttaagctctctgaagctaaaaggcaaaataaacatattacctccatttgtaaccttgctgaaaggtcttactgagctgtgtctatcatcctctgataagctcaacagggatgttcttgctgctctaagcaatgttcgctgtttgcattacctcaaactgattacacctaatctggaaaagtttgtcataggacagggtccactcaaaagcctacgacgcttgtgcatcatggtgcaaaccatgaccgagccagaaatccaacagggggctctgccaaatctggagtcattccggctgctctgtaaggatctaaatgggctatgtggcatcaacatccagtacatcggccccgaatgcctcaaggaggttgctcttgacaaaagaattagcgaagaaacaaaaaagaagtggaaggaaacagtgaagaaccatcctagatggcccaaggtctcatttgttaatacaggagaggttggtcagatgcagaatatggaggttgctcagcctacagaggatgctgcagcactggctttggctgccggctccctaaggccggttccggtttttagacgtccaaaggcagatcaagaaaggaccttagatctctgttccatgggccaaacctctagggaatcttgcagcaatactgagccatacttcaaaactaatgggacttcaccaggcaagctgaaccctgtgaatgatgaatgtcaccatttctgctag
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| Protein seq | METAVLSTLLNMLGPKLYTFLQENHELRRNLEHDIRYIRNELRMIGAVIDEHERGQMNHGGPLQGAWIHGARELAYDMEDCIDRFMHRMTSGHRLATMAVRTKFATVIQKLRKKSEDLSKLRANYTTAGNGNGDCQASTSGTMSSFETTHIPTADTVPVGMDGPRDEILELIMETQSQPNQLKVISLVGFGGLGKTLLAKQIYENTTICTQFEPQAWVSAAGKSARDVLKEILCQLGFQSQAQEDDVAICRNDLSMAKKQIKVESVHGLIPRFFIVIDDIQREYWNSTIKDAFPVDTGSSSIVLVTTAIHSIANACSSGNGHVYMMSTLDKKYSRKLFLREASWGDYPPGSETVLSTKCDGLPLALVSTAQFLKSKGQQLPQEYAKLCGNLACLPDKIRCLTVQHNSTRRGRMNSDIDLSHVRSLTIFGEAEDSVLEFSSYELLRVLDLEECENLKDEHLRKICKLLLLRYLSLGGTVTMLPKEITKLKFLETLDVRRTKIKVLPIQVIKLPCLTHLFGNFKLQDVGQKISKLQKYLSEKSKLETLAGFFANNDQGFPQLIDHMKNLAKVKIWCESETPSNSSSNTVHLSKAIQVFIQRGTNMNDVRSLSLNFGGCFQDQENMLKFSLEDSCYLSSLKLKGKINILPPFVTLLKGLTELCLSSSDKLNRDVLAALSNVRCLHYLKLITPNLEKFVIGQGPLKSLRRLCIMVQTMTEPEIQQGALPNLESFRLLCKDLNGLCGINIQYIGPECLKEVALDKRISEETKKKWKETVKNHPRWPKVSFVNTGEVGQMQNMEVAQPTEDAAALALAAGSLRPVPVFRRPKADQERTLDLCSMGQTSRESCSNTEPYFKTNGTSPGKLNPVNDECHHFC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.585924 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0462500 | RBH | 0.000000 | 0.629594 | 0.282822 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g27430 | RBH | 0.405539 | 0.426398 | 0.071084 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0462500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013400 | RBH | 0.072372 | 0.932706 | 1.048261 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013360 | RBH | 0.043916 | 0.0 | 0.620137 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013330 | RBH | 0.492062 | 1.457610 | 2.729320 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013080 | RBH | 0.053921 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013410 | RBH | 0.423476 | 0.000000 | 2.903189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0243600 | RBH | 0.9197185 | 1.427598 | 2.134317 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013360 | RBH | 0.026571 | 0.0 | 0.281831 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0258700 | RBH | 0.791088 | 2.0111995 | 2.6485795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013450 | RBH | 0.040609 | 0.081420 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013540 | RBH | 0.150579 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013170 | RBH | 0.000000 | 4.247920 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013140 | RBH | 0.137784 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013350 | RBH | 0.0 | 0.000000 | 0.597393 |
