Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0011960 | OGI:11038870 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:13152773-13153792 | ||||||||
| Gene Symbol | UCL34, OsUCL34, UCL35, OsUCL35 | ||||||||||
| DNA seq | atagcagcacacacacaatcaaattaaattgcgagctaacaaaggccacttcgttagcatagctagctgctagttagctagctctggtgtaattgagatcttgcagcacacgactatcgtagtttagtcatgggaagaggcttctgtgcaagcagctttgtggcagtagggcttgttgttcttgtgtgttcagcggcagcagctgctgctgagacccatgtcgtgggagactccaagggatggggcttctccgtcgcgtatgacagctgggccagtgggaaggctttcgccgccggcgacacacttggtatatatatagctatatatatgtatatcgactgatcctctgtctctacaccccagaaacgaaaacgaaaacgaaatcaacgaaagaaccacggatttttactctctggctgctctcttatatgtgcaggaactagctagtgacatatatatcggtgctatttatataaccggcttctttataatcaatctgcagatgcaagagaattagtttaatccgctagcttcgcttgcgcatgtgcagtgttcaactactaggcgggcgtgcataacgtggtggcggcgagcgcggcggagtaccggagctgcaaggtgcgcaactcggcggacgcggcggccacggcggccgggagcgccaagctcgacctcaagaagggcgtcaactacttcatctgcggcgtcccaggccactgcgccaccgggatgaagctccgtgtcgtcgccaactaatatttattaacgtaattcccctttgcagagaccaaataaatatgcacccaccggccttactttgttcaggggattaatatgtatccgtgtatctgagtgtgtattgctagtagtcttcatcagctgcatgctgcaatgcgcctactacggtcctagctcctaataatttctggttttctagaatatactaagccctaaataaccaacttggctatcaacagtgacgtgtactcgtgttaatttaaaacaagtactatactatac
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| CDS seq | atgtcgtgggagactccaagggatggggcttctccgtcgcgtatgacagctgggccagtgggaaggctttcgccgccggcgacacacttggcgggcgtgcataacgtggtggcggcgagcgcggcggagtaccggagctgcaaggtgcgcaactcggcggacgcggcggccacggcggccgggagcgccaagctcgacctcaagaagggcgtcaactacttcatctgcggcgtcccaggccactgcgccaccgggatgaagctccgtgtcgtcgccaactaa |
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| Protein seq | MSWETPRDGASPSRMTAGPVGRLSPPATHLAGVHNVVAASAAEYRSCKVRNSADAAATAAGSAKLDLKKGVNYFICGVPGHCATGMKLRVVAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0011960 | OsCMeo_11g0011960.01 | Chr11 | 13152890 | 13153528 | + | NAM | ||
| CDS seq | atgtcgtgggagactccaagggatggggcttctccgtcgcgtatgacagctgggccagtgggaaggctttcgccgccggcgacacacttggcgggcgtgcataacgtggtggcggcgagcgcggcggagtaccggagctgcaaggtgcgcaactcggcggacgcggcggccacggcggccgggagcgccaagctcgacctcaagaagggcgtcaactacttcatctgcggcgtcccaggccactgcgccaccgggatgaagctccgtgtcgtcgccaactaa
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| Protein seq | MSWETPRDGASPSRMTAGPVGRLSPPATHLAGVHNVVAASAAEYRSCKVRNSADAAATAAGSAKLDLKKGVNYFICGVPGHCATGMKLRVVAN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0011960 | OsCMeo_11g0011960.02 | Chr11 | 13152773 | 13153792 | + | IsoSeq | ||
| CDS seq | agcagcacacacacaatcaaattaaattgcgagctaacaaaggccacttcgtta |
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| Protein seq | SSTHTIKLNCELTKATSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 13153079 | 13153337 | + | OsCMeo_11g0011960.02 | OsCMeo_11g0011960.01,OsCMeo_11g0011960.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0426400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24140 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0426400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012010 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012100 | RBH | 0.0 | 9.051366 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0204300 | RBH | 0.021026 | 130.609352 | 0.566878 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011920 | RBH | 0.0 | 0.812139 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0218500 | SBH | 0 | 5.757787 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012080 | RBH | 0.0 | 0.307618 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011840 | RBH | 0.0 | 48.287994 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011970 | RBH | 0.0 | 5.452168 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011860 | RBH | 0.0 | 3.377572 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011850 | RBH | 0.0 | 56.732521 | 0.0 |
