Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0009250 | OGI:11024200 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:7984255-7986904 | ||||||||
| Gene Symbol | OsCP1 | ||||||||||
| DNA seq | atgtcgatttgagcaaatttttcagcaatccagttgagcacattatgttagtcatgctcctctttgaatttattttacctaacttctgatttgacacctggcgtacagtacaaccgtgaacagtagaagattaaatccagttgacaacgaaagcttagctagcactactttcagcgaagcacacataaagcatcgatcatatccatatcatatccctccatcgatcacaggctcacatctcgtctttaaccactctgttacttgcagcagcattgcgtgctcctgatttgacagggtaagaagcctccatcgcgatgccacacagcccattcgagtctgacgacacaccacgctgcattctgatgtaccctctctcgccccaatcctcgccccacgagttcttgacgatccagtacttggtgccgtctcgagttataccgtaaccgacagcggcaacaccatggtcgagatccgtgccgcattctccggtgaagacaccctagtttgattattcccaagtgatatatatatgatggtattagtatctttgagtataattagacacacgcacactgaatatgtgtagatcatgtgttgaactgttgattaatttcagacatatcgtgtagctaggttgttggtcatgttgttaattacctccgaatagaactggaaatcttggccgctagcctctactgcaacagccacaggctggtttgcgactgctttctgtagagccgactcgtcattggcaggaacgtcctcgtagccatcaatcgttacatcgtgagagcttgcctgcaacataaacaccagatggcaaattttcagtttgtattcagactaacttcattttagtcctaaaacaagtgtttattaaccatgcatctttctttactcggagcagatcttttttcatgataaacatttatgtttcctccgaacgctttgcgcaaaaattaagttattttttttcttcaaattcaacattgattttttttagtatagttaacataaatataatttttcatgagatttcaccgtgcaattacctttgccttgttacacctcccctgctccgctctatatgggtagttggactcggtggtgatccctccgttcctcttgatgaactggaacgcgtaatccatgagcccgccgtcgcagccctggttatcaccggtgtcgcagtccaccagctcctgctccgacagcgtcaccaacctccccgtcttgatcttgttcactccctccaccgccgccaccgtcgagaacgcccagcagctcccttaaaatcacaccaataagagccgagtgactagcacacacgtgcacgaagtaaatgggacatttaactttgtgccacttttgagatgtggccattaaggatttgtcacttgttatatatgacatgtggctctcatgtgtctatgacatgtgggttcagtggcaaatcctttatcgccactcgtaagagtggcaaatagttaattattttcgaagtaaatataagatcttttgccataaactatatgcttaattatatggatagataaaatattctgagaaaaaagtgtagccaacagtaaaaaaccattttgaaaaaaaaatcgtattttcacttatgcaagaaattatttaaaaatctaactgaatttaaatatattttgagtttttgactaaatttaagaataattagaaaaaaatccaaaaatttcgtgttaacagggattccaaaatttcggaaaccgaaattttaaatcctgttagaaaataatgtgccgtaataatctaatgattttgcataatttgtactatatctatccatatgtttttttgactgcatttggctttttccatagaaatgttatatgctttttagaacgagaaaaaaatgttcacgcttttttaccgcattggccttgatccttgatgccggtgacggcgccgcgctcgcgccagtcgaccgcgggcggcaggttgtcctcgtcgtctccgccgtaccggaaggagcccccctcgccgccgcggccgccgctcaggctgcggtggtggcgcgccctggagcccgcgtaggtgcggcggaactcgtccgtcgtcatgtcggcgaacttgttcagcgccagcctgaacggccggccgcccctcctgttcgcctcgtggatgtacctcgcgttctccacgaacacgttgaaccgccggcgagcctcgccgtcgtcgttgccaacgcctcctgatgctgccggccgcgacacggtgtaccggctccgccaccgctcgtacagcgcccgcaggctctcctccgacgagaggtcgctctccgtgaacgggatagccctcgccggcgctgccgccgccgcagccaacgccaccgccgccgccgcgaccaggaagcacctcagcatttcgcacggttttcacctaaaatacaagctagctgactttattcagttgagtgagctgaaatgaacttttttggaaatgcgaagttctattgatagagcagaaaaaaaattacaagattacaactctagaaagatcgtaaaaaaaaaagaaaaaatatatcaccacccagataccgacagcgccaacacacaggtccgggggaatggtagctatagcacaccgactttattcagttcaatgagct
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| CDS seq | atgctgaggtgcttcctggtcgcggcggcggcggtggcgttggctgcggcggcggcagcgccggcgagggctatcccgttcacggagagcgacctctcgtcggaggagagcctgcgggcgctgtacgagcggtggcggagccggtacaccgtgtcgcggccggcagcatcaggaggcgttggcaacgacgacggcgaggctcgccggcggttcaacgtgttcgtggagaacgcgaggtacatccacgaggcgaacaggaggggcggccggccgttcaggctggcgctgaacaagttcgccgacatgacgacggacgagttccgccgcacctacgcgggctccagggcgcgccaccaccgcagcctgagcggcggccgcggcggcgaggggggctccttccggtacggcggagacgacgaggacaacctgccgcccgcggtcgactggcgcgagcgcggcgccgtcaccggcatcaaggatcaaggccaatgcgggagctgctgggcgttctcgacggtggcggcggtggagggagtgaacaagatcaagacggggaggttggtgacgctgtcggagcaggagctggtggactgcgacaccggtgataaccagggctgcgacggcgggctcatggattacgcgttccagttcatcaagaggaacggagggatcaccaccgagtccaactacccatatagagcggagcaggggaggtgtaacaaggcaaaggcaagctctcacgatgtaacgattgatggctacgaggacgttcctgccaatgacgagtcggctctacagaaagcagtcgcaaaccagcctgtggctgttgcagtagaggctagcggccaagatttccagttctattcggagggtgtcttcaccggagaatgcggcacggatctcgaccatggtgttgccgctgtcggttacggtataactcgagacggcaccaagtactggatcgtcaagaactcgtggggcgaggattggggcgagagagggtacatcagaatgcagcgtggtgtgtcgtcagactcgaatgggctgtgtggcatcgcgatggaggcttcttaccctgtcaaatcaggagcacgcaatgctgctgcaagtaacagagtggttaaagacgagatgtga
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| Protein seq | MLRCFLVAAAAVALAAAAAAPARAIPFTESDLSSEESLRALYERWRSRYTVSRPAASGGVGNDDGEARRRFNVFVENARYIHEANRRGGRPFRLALNKFADMTTDEFRRTYAGSRARHHRSLSGGRGGEGGSFRYGGDDEDNLPPAVDWRERGAVTGIKDQGQCGSCWAFSTVAAVEGVNKIKTGRLVTLSEQELVDCDTGDNQGCDGGLMDYAFQFIKRNGGITTESNYPYRAEQGRCNKAKASSHDVTIDGYEDVPANDESALQKAVANQPVAVAVEASGQDFQFYSEGVFTGECGTDLDHGVAAVGYGITRDGTKYWIVKNSWGEDWGERGYIRMQRGVSSDSNGLCGIAMEASYPVKSGARNAAASNRVVKDEM |
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| Function | Thiol protease SEN102 [UniProtKB/Swiss-Prot:P43156] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0009250 | OsCMeo_11g0009250.01 | Chr11 | 7984255 | 7986904 | - | NAM | ||
| CDS seq | atgctgaggtgcttcctggtcgcggcggcggcggtggcgttggctgcggcggcggcagcgccggcgagggctatcccgttcacggagagcgacctctcgtcggaggagagcctgcgggcgctgtacgagcggtggcggagccggtacaccgtgtcgcggccggcagcatcaggaggcgttggcaacgacgacggcgaggctcgccggcggttcaacgtgttcgtggagaacgcgaggtacatccacgaggcgaacaggaggggcggccggccgttcaggctggcgctgaacaagttcgccgacatgacgacggacgagttccgccgcacctacgcgggctccagggcgcgccaccaccgcagcctgagcggcggccgcggcggcgaggggggctccttccggtacggcggagacgacgaggacaacctgccgcccgcggtcgactggcgcgagcgcggcgccgtcaccggcatcaaggatcaaggccaatgcgggagctgctgggcgttctcgacggtggcggcggtggagggagtgaacaagatcaagacggggaggttggtgacgctgtcggagcaggagctggtggactgcgacaccggtgataaccagggctgcgacggcgggctcatggattacgcgttccagttcatcaagaggaacggagggatcaccaccgagtccaactacccatatagagcggagcaggggaggtgtaacaaggcaaaggcaagctctcacgatgtaacgattgatggctacgaggacgttcctgccaatgacgagtcggctctacagaaagcagtcgcaaaccagcctgtggctgttgcagtagaggctagcggccaagatttccagttctattcggagggtgtcttcaccggagaatgcggcacggatctcgaccatggtgttgccgctgtcggttacggtataactcgagacggcaccaagtactggatcgtcaagaactcgtggggcgaggattggggcgagagagggtacatcagaatgcagcgtggtgtgtcgtcagactcgaatgggctgtgtggcatcgcgatggaggcttcttaccctgtcaaatcaggagcacgcaatgctgctgcaagtaacagagtggttaaagacgagatgtga
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| Protein seq | MLRCFLVAAAAVALAAAAAAPARAIPFTESDLSSEESLRALYERWRSRYTVSRPAASGGVGNDDGEARRRFNVFVENARYIHEANRRGGRPFRLALNKFADMTTDEFRRTYAGSRARHHRSLSGGRGGEGGSFRYGGDDEDNLPPAVDWRERGAVTGIKDQGQCGSCWAFSTVAAVEGVNKIKTGRLVTLSEQELVDCDTGDNQGCDGGLMDYAFQFIKRNGGITTESNYPYRAEQGRCNKAKASSHDVTIDGYEDVPANDESALQKAVANQPVAVAVEASGQDFQFYSEGVFTGECGTDLDHGVAAVGYGITRDGTKYWIVKNSWGEDWGERGYIRMQRGVSSDSNGLCGIAMEASYPVKSGARNAAASNRVVKDEM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0009250 | OsCMeo_11g0009250.03 | Chr11 | 7984255 | 7986904 | - | NAM | ||
| CDS seq | atgctgaggtgcttcctggtcgcggcggcggcggtggcgttggctgcggcggcggcagcgccggcgagggctatcccgttcacggagagcgacctctcgtcggaggagagcctgcgggcgctgtacgagcggtggcggagccggtacaccgtgtcgcggccggcagcatcaggaggcgttggcaacgacgacggcgaggctcgccggcggttcaacgtgttcgtggagaacgcgaggtacatccacgaggcgaacaggaggggcggccggccgttcaggctggcgctgaacaagttcgccgacatgacgacggacgagttccgccgcacctacgcgggctccagggcgcgccaccaccgcagcctgagcggcggccgcggcggcgaggggggctccttccggtacggcggagacgacgaggacaacctgccgcccgcggtcgactggcgcgagcgcggcgccgtcaccggcatcaaggatcaaggccaatgcgggagctgctgggcgttctcgacggtggcggcggtggagggagtgaacaagatcaagacggggaggttggtgacgctgtcggagcaggagctggtggactgcgacaccggtgataaccagggctgcgacggcgggctcatggattacgcgttccagttcatcaagaggaacggagggatcaccaccgagtccaactacccatatagagcggagcaggggaggtgtaacaaggcaaaggcaagctctcacgatgtaacgattgatggctacgaggacgttcctgccaatgacgagtcggctctacagaaagcagtcgcaaaccagcctgtggctgttgcagtagaggctagcggccaagatttccagttctattcggagggtgtcttcaccggagaatgcggcacggatctcgaccatggtgttgccgctgtcggttacggtataactcgagacggcaccaagtactggatcgtcaagaactcgtggggcgaggattggggcgagagagggtacatcagaatgcagcgtggtgtgtcgtcagactcgaatgggctgtgtggcatcgcgatggaggcttcttaccctgtcaaatcaggagcacgcaatgctgctgcaagtaacagagtggttaaagacgagatgtga
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| Protein seq | MLRCFLVAAAAVALAAAAAAPARAIPFTESDLSSEESLRALYERWRSRYTVSRPAASGGVGNDDGEARRRFNVFVENARYIHEANRRGGRPFRLALNKFADMTTDEFRRTYAGSRARHHRSLSGGRGGEGGSFRYGGDDEDNLPPAVDWRERGAVTGIKDQGQCGSCWAFSTVAAVEGVNKIKTGRLVTLSEQELVDCDTGDNQGCDGGLMDYAFQFIKRNGGITTESNYPYRAEQGRCNKAKASSHDVTIDGYEDVPANDESALQKAVANQPVAVAVEASGQDFQFYSEGVFTGECGTDLDHGVAAVGYGITRDGTKYWIVKNSWGEDWGERGYIRMQRGVSSDSNGLCGIAMEASYPVKSGARNAAASNRVVKDEM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0009250 | OsCMeo_11g0009250.02 | Chr11 | 7984255 | 7986904 | - | NAM | ||
| CDS seq | atgctgaggtgcttcctggtcgcggcggcggcggtggcgttggctgcggcggcggcagcgccggcgagggctatcccgttcacggagagcgacctctcgtcggaggagagcctgcgggcgctgtacgagcggtggcggagccggtacaccgtgtcgcggccggcagcatcaggaggcgttggcaacgacgacggcgaggctcgccggcggttcaacgtgttcgtggagaacgcgaggtacatccacgaggcgaacaggaggggcggccggccgttcaggctggcgctgaacaagttcgccgacatgacgacggacgagttccgccgcacctacgcgggctccagggcgcgccaccaccgcagcctgagcggcggccgcggcggcgaggggggctccttccggtacggcggagacgacgaggacaacctgccgcccgcggtcgactggcgcgagcgcggcgccgtcaccggcatcaaggatcaaggccaatgcgggagctgctgggcgttctcgacggtggcggcggtggagggagtgaacaagatcaagacggggaggttggtgacgctgtcggagcaggagctggtggactgcgacaccggtgataaccagggctgcgacggcgggctcatggattacgcgttccagttcatcaagaggaacggagggatcaccaccgagtccaactacccatatagagcggagcaggggaggtgtaacaaggcaaaggcaagctctcacgatgtaacgattgatggctacgaggacgttcctgccaatgacgagtcggctctacagaaagcagtcgcaaaccagcctgtggctgttgcagtagaggctagcggccaagatttccagttctattcggagggtgtcttcaccggagaatgcggcacggatctcgaccatggtgttgccgctgtcggttacggtataactcgagacggcaccaagtactggatcgtcaagaactcgtggggcgaggattggggcgagagagggtacatcagaatgcagcgtggtgtgtcgtcagactcgaatgggctgtgtggcatcgcgatggaggcttcttaccctgtcaaatcaggagcacgcaatgctgctgcaagtaacagagtggttaaagacgagatgtga
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| Protein seq | MLRCFLVAAAAVALAAAAAAPARAIPFTESDLSSEESLRALYERWRSRYTVSRPAASGGVGNDDGEARRRFNVFVENARYIHEANRRGGRPFRLALNKFADMTTDEFRRTYAGSRARHHRSLSGGRGGEGGSFRYGGDDEDNLPPAVDWRERGAVTGIKDQGQCGSCWAFSTVAAVEGVNKIKTGRLVTLSEQELVDCDTGDNQGCDGGLMDYAFQFIKRNGGITTESNYPYRAEQGRCNKAKASSHDVTIDGYEDVPANDESALQKAVANQPVAVAVEASGQDFQFYSEGVFTGECGTDLDHGVAAVGYGITRDGTKYWIVKNSWGEDWGERGYIRMQRGVSSDSNGLCGIAMEASYPVKSGARNAAASNRVVKDEM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0009250 | OsCMeo_11g0009250.04 | Chr11 | 7984397 | 7986902 | - | IsoSeq | ||
| CDS seq | atgcggcacggatctcgaccatggtgttgccgctgtcggttacggtataactcgagacggcaccaagtactggatcgtcaagaactcgtggggcgaggattggggcgagagagggtacatcagaatgcagcgtggtgtgtcgtcagactcgaatgggctgtgtggcatcgcgatggaggcttcttaccctgtcaaatcaggagcacgcaatgctgctgc
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| Protein seq | MRHGSRPWCCRCRLRYNSRRHQVLDRQELVGRGLGRERVHQNAAWCVVRLEWAVWHRDGGFLPCQIRSTQCCC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 7986167 | 7986904 | - | OsCMeo_11g0009250.03 | OsCMeo_11g0009250.03,OsCMeo_11g0009250.01 | All |
| RI | Chr11 | 7986167 | 7986904 | - | OsCMeo_11g0009250.03 | OsCMeo_11g0009250.03,OsCMeo_11g0009250.02 | All |
| A5 | Chr11 | 7986675 | 7986838 | - | OsCMeo_11g0009250.02 | OsCMeo_11g0009250.01,OsCMeo_11g0009250.02 | All |
| A5 | Chr11 | 7986675 | 7986826 | - | OsCMeo_11g0009250.02 | OsCMeo_11g0009250.04,OsCMeo_11g0009250.02 | All |
| A5 | Chr11 | 7986675 | 7986838 | - | OsCMeo_11g0009250.04 | OsCMeo_11g0009250.04,OsCMeo_11g0009250.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 52.815842 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0255300 | RBH | 0.0 | 0.124939 | 29.753477 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14900 | RBH | 0.0 | 0.087392 | 7.880007 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0255300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009360 | RBH | 0.0 | 3.251710 | 30.949354 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009230 | RBH | 0.0 | 0.0 | 14.359083 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009120 | RBH | 0.0 | 0.0 | 58.479900 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0126400 | RBH | 0.007308 | 0.006042 | 1.7000625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009140 | RBH | 0.0 | 0.0 | 9.234270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0129600 | RBH | 0.017904 | 0.0129895 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009210 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009100 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009320 | RBH | 0.0 | 0.0 | 7.321618 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009120 | RBH | 0.0 | 0.000000 | 25.343067 |
