Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0008610 | OGI:11022300 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:7238274-7243827 | ||||||||
| Gene Symbol | Orysa;CKL7 | ||||||||||
| DNA seq | atattcatttctcatagttatccccgcctttctctcctccattggaggattagaacggagagagaggaaggtggggaaaattgttagatttgttcatccattatattttcttgaaaggaaaaggaagcgaaggaattcaggtcttgataattgttcttgatgtgcatccccaaaagtacattcttttatcactagttgtcaaatgaattatagctttttccactattttgtgtaggatactgtttttgttggtgtctgttgtgctgtatcatttttccgagaagatctcacaccaaacatttttgtactgaaattgcttacaattattttgcttcaaaatttcaacggaaagattagtgtaaaatatcatgttttattgatgtcaagaaaaaaatttgcctcaattttcaagaaccttttagattcggaaatgcacagatatggttttgcatggttggtgagatggatggaaattgcattcaacctatggtcagttggtcacattttgtttctgtagatctttttctttatagtttttctggaaccaacttctgtcactaatttttttctactttcatgtttatctaaataatgatgattgatgacaattgttttgctctaaaattttggggaaatgttcgtacaggtatttgcatcacatcacaatctgcaaagcaggaatacctgaaactctcatccagagttgacgaaatcatgtcaacttagaatgatatcaaggctcttgttacattcagaagatcagggcttcaggccctgcttgtttgttgctggatgaagacattcaccaggaaaccactgcaaagtgcagtgcacgtacaattccttcgatcaagtggaagggcatttcatgggcttatagatcaactttgttccaaatgtcctaaacatgatgatggtgccactttgcaaagtgaaaccacttcaagcaagttcaagtgtttatacaagttcttcaggccatcaagtgaaggtgacactgcagctgtagacaatgtattgcgcaatgatggaaatacagaagttgtcgctatccagtcgaaagaaaatggtcgcaattctaataacatattggaggatggagagaagtcagttctgtcgtcggatcattctaaaaaattgagtgcacatcatcgactgaaaatctggattactagtggacacagtggcataatcggaagatacggaaagaagttggagctaaatgctgccaatgtgcctaagcagttcccaagtgaacatgtgaatactgtatggccagattggctcatgaaggtggcccctgaggcagtgcaaggctggttccctcgtcgtgcagaatcatttgagaaattaggcaaggtgtgtagtcaagttgatgatacaatacaagttactcattggaaaattttgatatttgtgcttgttaatgctaatttctttaaccatccctaattactattgtatcacttcttttctatttcagattggagaaggaacttatagtagtgtgtacaaagctcgagatcttaaaacaggcaagattgttgctctcaagaaggtgcggtttgtcaatttggatcctgaaagtgtgcgctttatggcaagagaaatacttgttcttcggaaactgaatcatccgaatgtcataaagttggaagggatcatagcatctcctgtttcaacaagtttgtatcttgtatttgaatacatggaacatgaccttactggtcttgctgcaactccaggcctcaagttcactgaaccacaggtgattgtgatactagtttttcagttaaccacttggcagacaagaattttaactgttcccctttctcattaatttcaggtaaagtgcttgatgcaacaattgcttagtggccttgatcactgccacagcaatggagttcttcatcgagacttgaagggttccaacctcttgattgacagcaatggtgtcttgaagattgcagactttggtctagcaacattttatgatcctaacaatcagcaaccactcacaagccgtgttgcaacattgtggtacaggccaccggaacttctgcttggtgccactaagtatggagtttctgtggatatgtggagtactgggtgcattctggcagaattgcttgctagcaagccaatcatgccaggaagaactgaggtatacatacaactattagtctattacatttagtatagtaccttatgtcattttatatcatggtgttctccaacaatgcattcctaggtagagcaaattcacaagatcttcaagctctgtggatcaccctctgatgagtactggcagaaactgaacgtgccccagacagggatgttcaagccctctcgccagtataggcggtgtattgcagataatttcaaacatttccctcagccagctatagttcttctagataatttgcttgcattagaaccagaagctcgtggaacagctgcctcgactctccagagtgacgtaagttagtaccctcaaattgattattggttgcagtgcagtgttctgtaatttactacggtacaacacgaagtttttggctaccccaggaaagacttgtcctttttttatgaaaatattattgggggttaatcaaggcacatttcttgagttggaatttgtcatggcctaagaaatcagccttacgtggccttgctggcccagtacataaaggcagaacaaggcaggcatccaacaggtctacaacagattgattcctaactgttgtttagtttgttttggtcttaagccacttatatataagaattcgatttcattagcgagtggttttgagggccggctgcataccttcacaaggtgtacagcatacacgcagccttcttcccggctgttttaacttgatctaatgatcattacaaaatgattttccatttttggaatacctaaaacgatgcatagatctagtcagaagtaacaaaatgatgtcaattgaaggcatattttctatattttaggttgaattctgtgtgtactggattgacaacttgttgtggaaaccagacatttttcaaagttgatttggtatctagcttgttagaggaaatattgtactgaccgcctagtaccagcaaactagtgcctgcaaaaatgctaaactggtccagaagtagttttccccagtatcatgccaatacaactcacatggttcaacaagttattatgtcttggtctaccgcgatttcattatatgtctggtttttcatagccttcttttaggagaacattgcatcgcagcacttaaccatgtatcacaaactttagtttttcagaagaaagccacttgcttgcagcccttcaagcttaccaaagtttccaccgagcaaagaatacgatgcaagactcaagctagaggaagctaggaggtatgtgtttcccaaccttttattcttcaaggaggatgtaattgagaagaactattagtggattctgaaattctgtcacgtttctgtaggcaaagaaaggttggaggatctgttagacctggaagagagaacgttagaataaatcgtggtaatggctctatccaaccaaaggtgagtacaaagatgtgctccttcttttcctaatttcctgtaaataacttttattccttcttaatacaaagatgcgctccttgcgtattcccaaaaaaaaaaaaaggtgagtacaagaaatttttcttgatgatcattgttatatgcagaaactttgataagatgtgctgctctccaattatacatgctcatgcttgatgaaacatcttcatatatttgacgctaatcatctcctatacattagctcaaaataagcactagaggttaactcaccaagctttatcatcgtgcagaaacatacatatatcagtggaaatctccacccgcaaggtgatccacggacattagctacaagggtgcgatctcctggacttaacgccacatggaacaacaggggtgattcaatgacggtcgtgaagtacctggatgtaagtacaactctgtgcggatagcatattccactatcttgacgacaaggagctcagacttgcttcaacctgaaccaactgatgtaatgaataagatgcatggttctcccaagaacgacctgggagagaagggccagactggggtaaggatggtacttctgcaaatgttaattcttttttaatataactttggttggtcaacaaaagcatcagtctggtcagatgaaaagcacataagaatatcagcttaaaggacatccctcatgtaaggtttagtgtcattgcctgtttgttagtgttgctactgatatatatgttgtaaggtattgttgcaagagtgttccacaagtgaacaaaacttatagtttacagaaattttaaataaaagatggactgaatgtctcaagagtcatagtacaatgatttgatattctactacaatctttacttgctgactgtgacatacagactaattttctgctgagagttgagatgttgtgtaatatgttgtacgggcatcaattcgtcgtctctgtatacatattgattttgattttatgtaacaaattaaattgataatttggctgttttgatttaaagaccaaaccatttatctcttaactaacagtagtcattttttttgttttgcttttatctctccagagctgtagggttaagaacagaacgcatcactctggttcactggttacaccagaaggaaacatagaggagatgctcaaggagcatgacaggaacatccaagcagccatgcgcaaagcacgccttaacaagaagaaatagttgtgacatttaggtgtgttcaagctaaagatcccaacttttccaagttccagttgaggaatggcagggctgcattcttgcacagagcacagagcttcttcaaaagggtaattgctttaaaacgtgatgaagtagctgaaaataacatgatcacttaaaagtgcagatatgttaaagtgtcaggtcatttgattgccgttttttctacagatcaagatcaaacctgaaatgtcgatacaatacgagagtttgggcatggacattatttcaaatgacaggttgtcctttgaacctgaaattcttgactgatggcagtgagagatccagatcatgccggagcaactaagaagaaatttcgacaacattgagtcatggataggtacatcttacagttacaaagtatgagcagcactgcgcaagaggaggccaaacagagtgccagggatatccgaaagcgtagactggcctttattcttgcctgaattcttgtttcaccaagcttctgtggtctttccccttgttatggctgttctaacccatgccatctgcatctggtgttgctagacgggcttgtataaacttttcatcctcttatttctcttgtttttcttcttgcaagggtcttatataaactgtgcattctttgtccagttttttggctgtgtgcattctatgcaaaggccgggggtggactcagttggaatgtatcatcttggtgtatttaactgagtcttaataaaacttccattatc
More
|
||||||||||
| CDS seq | atgaagacattcaccaggaaaccactgcaaagtgcagtgcacgtacaattccttcgatcaagtggaagggcatttcatgggcttatagatcaactttgttccaaatgtcctaaacatgatgatggtgccactttgcaaagtgaaaccacttcaagcaagttcaagtgtttatacaagttcttcaggccatcaagtgaaggtgacactgcagctgtagacaatgtattgcgcaatgatggaaatacagaagttgtcgctatccagtcgaaagaaaatggtcgcaattctaataacatattggaggatggagagaagtcagttctgtcgtcggatcattctaaaaaattgagtgcacatcatcgactgaaaatctggattactagtggacacagtggcataatcggaagatacggaaagaagttggagctaaatgctgccaatgtgcctaagcagttcccaagtgaacatgtgaatactgtatggccagattggctcatgaaggtggcccctgaggcagtgcaaggctggttccctcgtcgtgcagaatcatttgagaaattaggcaagttggaagggatcatagcatctcctgtttcaacaagtttgtatcttgtatttgaatacatggaacatgaccttactggtcttgctgcaactccaggcctcaagttcactgaaccacaggtaaagtgcttgatgcaacaattgcttagtggccttgatcactgccacagcaatggagttcttcatcgagacttgaagggttccaacctcttgattgacagcaatggtgtcttgaagattgcagactttggtctagcaacattttatgatcctaacaatcagcaaccactcacaagccgtgttgcaacattgtggtacaggccaccggaacttctgcttggtgccactaagtatggagtttctgtggatatgtggagtactgggtgcattctggcagaattgcttgctagcaagccaatcatgccaggaagaactgaggtagagcaaattcacaagatcttcaagctctgtggatcaccctctgatgagtactggcagaaactgaacgtgccccagacagggatgttcaagccctctcgccagtataggcggtgtattgcagataatttcaaacatttccctcagccagctatagttcttctagataatttgcttgcattagaaccagaagctcgtggaacagctgcctcgactctccagagtgactttttcagaagaaagccacttgcttgcagcccttcaagcttaccaaagtttccaccgagcaaagaatacgatgcaagactcaagctagaggaagctaggaggcaaagaaaggttggaggatctgttagacctggaagagagaacaaacatacatatatcagtggaaatctccacccgcaaggtgatccacggacattagctacaagggtgcgatctcctggacttaacgccacatggaacaacaggggtgattcaatgacggtcgtgaagtacctggattacaactctgtgcggatagcatattccactatcttgacgacaaggagctcagacttgcttcaacctgaaccaactgatgtaatgaataagatgcatggttctcccaagaacgacctgggagagaagggccagactgggagctgtagggttaagaacagaacgcatcactctggttcactggttacaccagaaggaaacatagaggagatgctcaaggagcatgacaggaacatccaagcagccatgcgcaaagcacgccttaacaagaagaaatag
More
|
||||||||||
| Protein seq | MKTFTRKPLQSAVHVQFLRSSGRAFHGLIDQLCSKCPKHDDGATLQSETTSSKFKCLYKFFRPSSEGDTAAVDNVLRNDGNTEVVAIQSKENGRNSNNILEDGEKSVLSSDHSKKLSAHHRLKIWITSGHSGIIGRYGKKLELNAANVPKQFPSEHVNTVWPDWLMKVAPEAVQGWFPRRAESFEKLGKLEGIIASPVSTSLYLVFEYMEHDLTGLAATPGLKFTEPQVKCLMQQLLSGLDHCHSNGVLHRDLKGSNLLIDSNGVLKIADFGLATFYDPNNQQPLTSRVATLWYRPPELLLGATKYGVSVDMWSTGCILAELLASKPIMPGRTEVEQIHKIFKLCGSPSDEYWQKLNVPQTGMFKPSRQYRRCIADNFKHFPQPAIVLLDNLLALEPEARGTAASTLQSDFFRRKPLACSPSSLPKFPPSKEYDARLKLEEARRQRKVGGSVRPGRENKHTYISGNLHPQGDPRTLATRVRSPGLNATWNNRGDSMTVVKYLDYNSVRIAYSTILTTRSSDLLQPEPTDVMNKMHGSPKNDLGEKGQTGSCRVKNRTHHSGSLVTPEGNIEEMLKEHDRNIQAAMRKARLNKKK |
||||||||||
| Function | Probable serine/threonine-protein kinase At1g54610 [UniProtKB/Swiss-Prot:Q9ZVM9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0008610 | OsCMeo_11g0008610.01 | Chr11 | 7238274 | 7243075 | + | NAM | ||
| CDS seq | atgaagacattcaccaggaaaccactgcaaagtgcagtgcacgtacaattccttcgatcaagtggaagggcatttcatgggcttatagatcaactttgttccaaatgtcctaaacatgatgatggtgccactttgcaaagtgaaaccacttcaagcaagttcaagtgtttatacaagttcttcaggccatcaagtgaaggtgacactgcagctgtagacaatgtattgcgcaatgatggaaatacagaagttgtcgctatccagtcgaaagaaaatggtcgcaattctaataacatattggaggatggagagaagtcagttctgtcgtcggatcattctaaaaaattgagtgcacatcatcgactgaaaatctggattactagtggacacagtggcataatcggaagatacggaaagaagttggagctaaatgctgccaatgtgcctaagcagttcccaagtgaacatgtgaatactgtatggccagattggctcatgaaggtggcccctgaggcagtgcaaggctggttccctcgtcgtgcagaatcatttgagaaattaggcaagttggaagggatcatagcatctcctgtttcaacaagtttgtatcttgtatttgaatacatggaacatgaccttactggtcttgctgcaactccaggcctcaagttcactgaaccacaggtaaagtgcttgatgcaacaattgcttagtggccttgatcactgccacagcaatggagttcttcatcgagacttgaagggttccaacctcttgattgacagcaatggtgtcttgaagattgcagactttggtctagcaacattttatgatcctaacaatcagcaaccactcacaagccgtgttgcaacattgtggtacaggccaccggaacttctgcttggtgccactaagtatggagtttctgtggatatgtggagtactgggtgcattctggcagaattgcttgctagcaagccaatcatgccaggaagaactgaggtagagcaaattcacaagatcttcaagctctgtggatcaccctctgatgagtactggcagaaactgaacgtgccccagacagggatgttcaagccctctcgccagtataggcggtgtattgcagataatttcaaacatttccctcagccagctatagttcttctagataatttgcttgcattagaaccagaagctcgtggaacagctgcctcgactctccagagtgactttttcagaagaaagccacttgcttgcagcccttcaagcttaccaaagtttccaccgagcaaagaatacgatgcaagactcaagctagaggaagctaggaggcaaagaaaggttggaggatctgttagacctggaagagagaacaaacatacatatatcagtggaaatctccacccgcaaggtgatccacggacattagctacaagggtgcgatctcctggacttaacgccacatggaacaacaggggtgattcaatgacggtcgtgaagtacctggattacaactctgtgcggatagcatattccactatcttgacgacaaggagctcagacttgcttcaacctgaaccaactgatgtaatgaataagatgcatggttctcccaagaacgacctgggagagaagggccagactgggagctgtagggttaagaacagaacgcatcactctggttcactggttacaccagaaggaaacatagaggagatgctcaaggagcatgacaggaacatccaagcagccatgcgcaaagcacgccttaacaagaagaaatag
More
|
|||||||
| Protein seq | MKTFTRKPLQSAVHVQFLRSSGRAFHGLIDQLCSKCPKHDDGATLQSETTSSKFKCLYKFFRPSSEGDTAAVDNVLRNDGNTEVVAIQSKENGRNSNNILEDGEKSVLSSDHSKKLSAHHRLKIWITSGHSGIIGRYGKKLELNAANVPKQFPSEHVNTVWPDWLMKVAPEAVQGWFPRRAESFEKLGKLEGIIASPVSTSLYLVFEYMEHDLTGLAATPGLKFTEPQVKCLMQQLLSGLDHCHSNGVLHRDLKGSNLLIDSNGVLKIADFGLATFYDPNNQQPLTSRVATLWYRPPELLLGATKYGVSVDMWSTGCILAELLASKPIMPGRTEVEQIHKIFKLCGSPSDEYWQKLNVPQTGMFKPSRQYRRCIADNFKHFPQPAIVLLDNLLALEPEARGTAASTLQSDFFRRKPLACSPSSLPKFPPSKEYDARLKLEEARRQRKVGGSVRPGRENKHTYISGNLHPQGDPRTLATRVRSPGLNATWNNRGDSMTVVKYLDYNSVRIAYSTILTTRSSDLLQPEPTDVMNKMHGSPKNDLGEKGQTGSCRVKNRTHHSGSLVTPEGNIEEMLKEHDRNIQAAMRKARLNKKK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0008610 | OsCMeo_11g0008610.02 | Chr11 | 7238274 | 7243827 | + | IsoSeq | ||
| CDS seq | atggcagggctgcattcttgcacagagcacagagcttcttcaaaaggatcaagatcaaacctgaaatgtcgatacaatacgagagtttgggcatggacattatttcaaatgacaggttgtcctttgaacctgaaattcttgactgatggcagtgagagatccagatcatgccggagc |
|||||||
| Protein seq | MAGLHSCTEHRASSKGSRSNLKCRYNTRVWAWTLFQMTGCPLNLKFLTDGSERSRSCRS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 7239632 | 7239925 | + | OsCMeo_11g0008610.02 | OsCMeo_11g0008610.02,OsCMeo_11g0008610.01 | All |
| RI | Chr11 | 7242140 | 7242417 | + | OsCMeo_11g0008610.02 | OsCMeo_11g0008610.02,OsCMeo_11g0008610.01 | All |
| A5 | Chr11 | 7238413 | 7238920 | + | OsCMeo_11g0008610.02 | OsCMeo_11g0008610.02,OsCMeo_11g0008610.01 | All |
| A5 | Chr11 | 7241807 | 7242140 | + | OsCMeo_11g0008610.02 | OsCMeo_11g0008610.02,OsCMeo_11g0008610.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.269521 | 0.0 | 25.018225 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0242500 | RBH | 0.238130 | 0.000000 | 6.483747 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13860 | RBH | 0.161036 | 0.000000 | 1.669043 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0242500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008720 | RBH | 0.0 | 0.0 | 2.659967 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008610 | RBH | 0.0 | 0.0 | 5.700513 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006490 | RBH | 1.573695 | 0.0 | 4.421052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008550 | RBH | 0.887900 | 0.0 | 8.905982 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0116200 | RBH | 0.6401635 | 0.78395 | 0.304516 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008580 | RBH | 0.000000 | 0.0 | 6.668936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0120400 | RBH | 1.432829 | 0.7547495 | 2.9208935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008640 | RBH | 0.141138 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008730 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008650 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008500 | RBH | 0.0 | 0.0 | 1.428604 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008630 | RBH | 0.129474 | 0.362549 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008670 | RBH | 0.0 | 0.0 | 1.318000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008550 | RBH | 0.191246 | 0.0 | 15.408472 |
