Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0006220 | OGI:11010520 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:4861953-4864201 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctggccgtgctcagtcagtctgctggaccccttcctacatgtgtcaccgttcttcaacacaacgtctgaagtttgaacattttttgtgttgaacattgtgcttctctgtcttcatatgttgcaggaggaaagatggagaaagtgctgagagtagccatggaggtgatgagtcggcaccatgctcccgatagaagcctgtgcttactgttactgctgctgttcttgcttcttggtgtgcccatggcagcgtccaccgaacaatcgccagcgcgactgaacaaggcacacgaggacatcatgcgagatattctgagctcggtgggcagtaccaagaactggaacacctgctcaaatccatgccaatggagtggtgttcattgctcttcagttgcatcctctgcgtttgtcactaggctatccctccccggatgtggcctctccaatgccaccatccttgcgtccatatgcaatcttcataccttgcgatctcttaacctctcgagaaactcgttcaccgatttgccaagccaactctctccgtgccccatgaaggctgaattgcaagtgctggatctcagtagcaatatgctgtctggtcaacttggtgatttcgttggttttcacaagctcgaggttcttgatttgtcctccaactctttaaatggcaatataagtacccagctgagtgatttgccaaaactgagaagcttgaaccttagttccaatggttttgaaggcccagtccctacaagcatcgctacctctctggaagacctcgtgctctcgggtaataatttcagtgatcatattccaatgggtttgttcaggtatggaaatcttactctgttggatctctgccgcaataatctacacggtgatgtcccagatggcttcttgagcttcccaaaactcaggattttggtcctttcagaaaacaacctgacaggaaaaattccacggagcttgctgaatgtcaccacactgtttcggtttggaggtaatcagaataattttgttggctcaattcctcaaggaattaccaggaacattaggatgttggatttgagttacaacatgctcaatggtgatataccctctgaactgctctcacctgatactttggagaccattgacctcactgcaaataggcttgaagggttcatccctgggaatgtttctcggagcctccatagtattcggcttggtcgaaacttgctcggtggaagcatcccagaatcaataggcaatgccattgacttggttaatcttctgttagatggcaataagttggttggatatataccttggcagctcagcagatgcaagaacttggcactcatcgatctgtcatcaaaccaggtgcagggtaatatacctattgggctgggcaaccttgagcagctcgtagtcttgaagctccaaaagaacaatctcagtggagatatcccaagttcattttctgacatgtcagccctggaaatacttaacctgagtcataactcattcactggagaactacctttcacaaattctactcagtcactgaagctctgctacttaggtttgcatggcaacaagctcaatggtgtgattccatcgtcgatcagcttgctgcagtctctgatcaccattgatctggggaacaatgagttgattggaattatccccacaaacattggaacctttctgaagttggagcgtcttgatctttcaaaaaactacttgtcaggtcaggtgccatcctcagttgcaaacctggaaagattaatgtgtctattcctttcagacaataacctttccggaccattgcctgagctacctaaatgggtgatggtcaatgtaactggaaatccaggcatcatactagacacggaagaaaatagaacttcaggcagtatgaaaggctcccaggatgatttcagatcagctatatgggtcgcagcagcttcttttgtacttggattcagcttgtccttctattgggctggaccaggggaaaaattgatgccaaggttggagactcttcactgtgacgattgatgatcattaaatccatacctgtgtaggtgacaaagttgatccatgtattagtaatagttgcagataccttcaagtcactacgagatgtactaggtgacatgaaaaaggattaaaggccattattgtatcatccttaatgtacaaatgctgaggtaagcctaaggttgatttgcatagtcctattgataaacggaggtggctgtttt
More
|
||||||||||
| CDS seq | atgctggccgtgctcagaggaaagatggagaaagtgctgagagtagccatggaggtgatgagtcggcaccatgctcccgatagaagcctgtgcttactgttactgctgctgttcttgcttcttggtgtgcccatggcagcgtccaccgaacaatcgccagcgcgactgaacaaggcacacgaggacatcatgcgagatattctgagctcggtgggcagtaccaagaactggaacacctgctcaaatccatgccaatggagtggtgttcattgctcttcagttgcatcctctgcgtttgtcactaggctatccctccccggatgtggcctctccaatgccaccatccttgcgtccatatgcaatcttcataccttgcgatctcttaacctctcgagaaactcgttcaccgatttgccaagccaactctctccgtgccccatgaaggctgaattgcaagtgctggatctcagtagcaatatgctgtctggtcaacttggtgatttcgttggttttcacaagctcgaggttcttgatttgtcctccaactctttaaatggcaatataagtacccagctgagtgatttgccaaaactgagaagcttgaaccttagttccaatggttttgaaggcccagtccctacaagcatcgctacctctctggaagacctcgtgctctcgggtaataatttcagtgatcatattccaatgggtttgttcaggtatggaaatcttactctgttggatctctgccgcaataatctacacggtgatgtcccagatggcttcttgagcttcccaaaactcaggattttggtcctttcagaaaacaacctgacaggaaaaattccacggagcttgctgaatgtcaccacactgtttcggtttggaggtaatcagaataattttgttggctcaattcctcaaggaattaccaggaacattaggatgttggatttgagttacaacatgctcaatggtgatataccctctgaactgctctcacctgatactttggagaccattgacctcactgcaaataggcttgaagggttcatccctgggaatgtttctcggagcctccatagtattcggcttggtcgaaacttgctcggtggaagcatcccagaatcaataggcaatgccattgacttggttaatcttctgttagatggcaataagttggttggatatataccttggcagctcagcagatgcaagaacttggcactcatcgatctgtcatcaaaccaggtgcagggtaatatacctattgggctgggcaaccttgagcagctcgtagtcttgaagctccaaaagaacaatctcagtggagatatcccaagttcattttctgacatgtcagccctggaaatacttaacctgagtcataactcattcactggagaactacctttcacaaattctactcagtcactgaagctctgctacttaggtttgcatggcaacaagctcaatggtgtgattccatcgtcgatcagcttgctgcagtctctgatcaccattgatctggggaacaatgagttgattggaattatccccacaaacattggaacctttctgaagttggagcgtcttgatctttcaaaaaactacttgtcaggtcaggtgccatcctcagttgcaaacctggaaagattaatgtgtctattcctttcagacaataacctttccggaccattgcctgagctacctaaatgggtgatggtcaatgtaactggaaatccaggcatcatactagacacggaagaaaatagaacttcaggcagtatgaaaggctcccaggatgatttcagatcagctatatgggtcgcagcagcttcttttgtacttggattcagcttgtccttctattgggctggaccaggggaaaaattgatgccaaggttggagactcttcactgtgacgattga
More
|
||||||||||
| Protein seq | MLAVLRGKMEKVLRVAMEVMSRHHAPDRSLCLLLLLLFLLLGVPMAASTEQSPARLNKAHEDIMRDILSSVGSTKNWNTCSNPCQWSGVHCSSVASSAFVTRLSLPGCGLSNATILASICNLHTLRSLNLSRNSFTDLPSQLSPCPMKAELQVLDLSSNMLSGQLGDFVGFHKLEVLDLSSNSLNGNISTQLSDLPKLRSLNLSSNGFEGPVPTSIATSLEDLVLSGNNFSDHIPMGLFRYGNLTLLDLCRNNLHGDVPDGFLSFPKLRILVLSENNLTGKIPRSLLNVTTLFRFGGNQNNFVGSIPQGITRNIRMLDLSYNMLNGDIPSELLSPDTLETIDLTANRLEGFIPGNVSRSLHSIRLGRNLLGGSIPESIGNAIDLVNLLLDGNKLVGYIPWQLSRCKNLALIDLSSNQVQGNIPIGLGNLEQLVVLKLQKNNLSGDIPSSFSDMSALEILNLSHNSFTGELPFTNSTQSLKLCYLGLHGNKLNGVIPSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSKNYLSGQVPSSVANLERLMCLFLSDNNLSGPLPELPKWVMVNVTGNPGIILDTEENRTSGSMKGSQDDFRSAIWVAAASFVLGFSLSFYWAGPGEKLMPRLETLHCDD |
||||||||||
| Function | Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [UniProtKB/Swiss-Prot:O82318] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0006220 | OsCMeo_11g0006220.01 | Chr11 | 4861953 | 4863995 | + | NAM | ||
| CDS seq | atgctggccgtgctcagaggaaagatggagaaagtgctgagagtagccatggaggtgatgagtcggcaccatgctcccgatagaagcctgtgcttactgttactgctgctgttcttgcttcttggtgtgcccatggcagcgtccaccgaacaatcgccagcgcgactgaacaaggcacacgaggacatcatgcgagatattctgagctcggtgggcagtaccaagaactggaacacctgctcaaatccatgccaatggagtggtgttcattgctcttcagttgcatcctctgcgtttgtcactaggctatccctccccggatgtggcctctccaatgccaccatccttgcgtccatatgcaatcttcataccttgcgatctcttaacctctcgagaaactcgttcaccgatttgccaagccaactctctccgtgccccatgaaggctgaattgcaagtgctggatctcagtagcaatatgctgtctggtcaacttggtgatttcgttggttttcacaagctcgaggttcttgatttgtcctccaactctttaaatggcaatataagtacccagctgagtgatttgccaaaactgagaagcttgaaccttagttccaatggttttgaaggcccagtccctacaagcatcgctacctctctggaagacctcgtgctctcgggtaataatttcagtgatcatattccaatgggtttgttcaggtatggaaatcttactctgttggatctctgccgcaataatctacacggtgatgtcccagatggcttcttgagcttcccaaaactcaggattttggtcctttcagaaaacaacctgacaggaaaaattccacggagcttgctgaatgtcaccacactgtttcggtttggaggtaatcagaataattttgttggctcaattcctcaaggaattaccaggaacattaggatgttggatttgagttacaacatgctcaatggtgatataccctctgaactgctctcacctgatactttggagaccattgacctcactgcaaataggcttgaagggttcatccctgggaatgtttctcggagcctccatagtattcggcttggtcgaaacttgctcggtggaagcatcccagaatcaataggcaatgccattgacttggttaatcttctgttagatggcaataagttggttggatatataccttggcagctcagcagatgcaagaacttggcactcatcgatctgtcatcaaaccaggtgcagggtaatatacctattgggctgggcaaccttgagcagctcgtagtcttgaagctccaaaagaacaatctcagtggagatatcccaagttcattttctgacatgtcagccctggaaatacttaacctgagtcataactcattcactggagaactacctttcacaaattctactcagtcactgaagctctgctacttaggtttgcatggcaacaagctcaatggtgtgattccatcgtcgatcagcttgctgcagtctctgatcaccattgatctggggaacaatgagttgattggaattatccccacaaacattggaacctttctgaagttggagcgtcttgatctttcaaaaaactacttgtcaggtcaggtgccatcctcagttgcaaacctggaaagattaatgtgtctattcctttcagacaataacctttccggaccattgcctgagctacctaaatgggtgatggtcaatgtaactggaaatccaggcatcatactagacacggaagaaaatagaacttcaggcagtatgaaaggctcccaggatgatttcagatcagctatatgggtcgcagcagcttcttttgtacttggattcagcttgtccttctattgggctggaccaggggaaaaattgatgccaaggttggagactcttcactgtgacgattga
More
|
|||||||
| Protein seq | MLAVLRGKMEKVLRVAMEVMSRHHAPDRSLCLLLLLLFLLLGVPMAASTEQSPARLNKAHEDIMRDILSSVGSTKNWNTCSNPCQWSGVHCSSVASSAFVTRLSLPGCGLSNATILASICNLHTLRSLNLSRNSFTDLPSQLSPCPMKAELQVLDLSSNMLSGQLGDFVGFHKLEVLDLSSNSLNGNISTQLSDLPKLRSLNLSSNGFEGPVPTSIATSLEDLVLSGNNFSDHIPMGLFRYGNLTLLDLCRNNLHGDVPDGFLSFPKLRILVLSENNLTGKIPRSLLNVTTLFRFGGNQNNFVGSIPQGITRNIRMLDLSYNMLNGDIPSELLSPDTLETIDLTANRLEGFIPGNVSRSLHSIRLGRNLLGGSIPESIGNAIDLVNLLLDGNKLVGYIPWQLSRCKNLALIDLSSNQVQGNIPIGLGNLEQLVVLKLQKNNLSGDIPSSFSDMSALEILNLSHNSFTGELPFTNSTQSLKLCYLGLHGNKLNGVIPSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSKNYLSGQVPSSVANLERLMCLFLSDNNLSGPLPELPKWVMVNVTGNPGIILDTEENRTSGSMKGSQDDFRSAIWVAAASFVLGFSLSFYWAGPGEKLMPRLETLHCDD
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0006220 | OsCMeo_11g0006220.02 | Chr11 | 4862024 | 4864201 | + | IsoSeq | ||
| CDS seq | atggttttgaaggcccagtccctacaagcatcgctacctctctggaagacctcgtgctctcgggtaataatttcagtgatcatattccaatgggtttgttcaggtatggaaatcttactctgttggatctctgccgcaataatctacacggtgatgtcccagatggct |
|||||||
| Protein seq | MVLKAQSLQASLPLWKTSCSRVIISVIIFQWVCSGMEILLCWISAAIIYTVMSQMA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.414900 | 1.023626 | 2.291643 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0514700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09110 | RBH | 0.437010 | 0.299523 | 0.166304 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0514700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006250 | RBH | 0.200079 | 0.688635 | 1.382396 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006240 | RBH | 0.0 | 1.504938 | 0.990811 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006250 | RBH | 0.0 | 4.023595 | 1.028102 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006130 | RBH | 0.054242 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006110 | SBH | 0.551256 | 2.781721 | 3.483215 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0080400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006160 | RBH | 0.000000 | 0.0 | 0.210925 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0081100 | RBH | 0.809538 | 1.174264 | 3.052263 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006140 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006220 | RBH | 0.031435 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006210 | SBH | 1.640103 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006230 | RBH | 0.194129 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006220 | RBH | 0.075333 | 1.062408 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006250 | SBH | 0.103202 | 0.843622 | 0.367237 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006030 | RBH | 0.491974 | 2.046096 | 2.023926 |
