Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0006040 | OGI:11014520 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:4702919-4706166 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttagttaccctcaattcccatcctagcaagcatggccggctcttcctctcttgcatcgcctcgctcactacagctaccactcctcctccttttcctcctcgttgccgctgcgataggcagctacgaccccaaggcgttctgttccaagacgacagacgtagcatcgtgccttaaggtgttcccgacactcccagacatcgtcaccaaggcgcaggacaaccaagagttgtacaaacggctggtccgctactgctcattcaagacctacgaggccacgtcgctcgcggaatccatgattgccaccaccaccgccgccaaccccgcgaatatcgccaccttcttcgagcagtggaaaggggacgaggcgataacgacaaaaacacctccaggcaagtgcctcttgagctgcaacaagaccatcggcgaagttaacgccatcctaacctgcggacacacctacatggaagacaggccccccatcatccaccagaacctcaccgtcttgttccatggcggccacccgccgtcactctgcaagagtggatgccttgacggctcgtcgtcagagggtgaggtcctcctcgccaccaagttcaactatatatggagcttgttggatctcatggaagctgtcctaccggaatatctttctgagactgggactgcgacgacgacggtaccatctcccgacgtcgctgcggcggcggccccggccccatgagcaactacatatgcatgcagtcccttcgattcgatcgaccacaccacaacagtgcagtgcatacacgcatatacttactatgtatctaagaaataattaagatttcacagagagcatttaagaatcaagtttcactaattgttgcagtatatagtagcccatttaatttcatccatcagttagagtctcaccatgttacggtccgttttgtgccttttattcgctccaaaatatagtgttctaattcttaccgtggaattggatgttcacccctcaagtgcatacacgtacttgcttccctatcactcaaatagttacaaaatgttctgaaaaataattacagcatttatacagcaagcatctatcataaccaaacttatgtttaatttttttttggcatgtaaagattgaatttagtttttaggcataattgtattcttgcctttaattacttgctgcaattgtgattttgcctttgctttttacggtttgtggttttgccctcacttgctgcaattgtgatataccaagatatctaaaagaacaatatctatctggcaaccaaacaactacaaatattgttcctcagtctttagtttaggcaaggcaaaaagttcacttttatggaaattaatattgaggataggtagttgttctaaaacatatagaaaatattttcagcttgctctaaattatgatccatataaaaatcagtgtgtcatccgcatactgcacctgttttatataatcgttaagatgaggtcctactcctgatttatataatcgttatgggctcggaaatcggaataggtgaattaaaggaaaattgatttagaaaatagaaaaaaaatggttctaccacctaaataaatcacatgcctccgaccacctgttctcaaaatcattatgtaccccaaacgtaatgagaggaagagcaacatgtggcccacaacggtaatggtctaacttctatggtcagcgggcatggagctgagttggtggtgctagtgcactgcgtggtggggtgcatatagcaagatggcaaggtgcatgcaggtcgggccagtatggctagatgggcagggttagtgaggaggggcttacgtctcggtagcacatgtgccacagttcgtgggagatgacgacatatatgggccactattgtacgatcgaaaaaagaccaaacaaaccaaccagagggaacaaaaccaaacaaaccaaccagagggggtgaatggtagggaaaacaaaaaacccaaaaacttttagtggaaataaaagttaccttcaaattgatggagttctcgacatagccgatctgaccgttagattaattccggtctgaccgtctccacatcgctggtctgaccgccccctcatcgccaagttggaccgccatctgggttagaccgccgacttgcctcccatttaaccgtcggatccagaaaaacatgtatcaacaaaactcttgaaagtagatcaacttcattgcatcaatgtgtttcaaaagtgcatctaaagcactcatctctcaactcatgaactaggattaaaacctcaaagtaaaccctaacttttctctcccaaaaagtcaatatcttctagtctcaacccctcatctatttataccacaaagcccgcccactcaaagtaggtgtagagctcatatttccaatagaactccatccctcaatttccatacgttttacaagggttaattcaatccatgccatttcaaataaatgtcattacaattcgtctattcgtaaccgtgccactaaaattttacaaaattagaaccatgccactaacgtcacatttcccatccatctcctcatctgcacatgggacccacatgtcagtttcatcttccttcatccttctatctttttccttcccatctctctacaccttgtttcaaatgaggcaaccagcagggagggtgcgtttctatgtcaccgtcagcagcgtgaccatctccggcatttgcggctcctaaaatttcagaactcggtttctttttccttctctatttgcacctgTtttttttttcactctatttgcaggcagcaagcagctggcgagctcggcaacctttgctcgtccctgcgattagcgccagcaccacgcgaggcggcctgcggcagtgcggccaggatagggtcactgatcatgagcagacaagcaacgacgagccgacgaggatccatgataatggcggcgtcatacatgggatgactctctgcgtcgggcgtccgatcgaccgatttacgcgaaaaactactttaaacttattttcttcacaagtttgaaatttaaaaaaaaaagaagacagtggagtacctggagtacggcaactggggcgctggggcagagacggccgaccgtgtgaagtggaagggcgtccgggtgatcaccgcggcggaggccaaccgtttcaccgttgatcacttcatcaacggtaaccagtgggtgcccaacttggtcaacggcgagcagatcaactacacccacggtctcatctag
More
|
||||||||||
| CDS seq | atggccggctcttcctctcttgcatcgcctcgctcactacagctaccactcctcctccttttcctcctcgttgccgctgcgataggcagctacgaccccaaggcgttctgttccaagacgacagacgtagcatcgtgccttaaggtgttcccgacactcccagacatcgtcaccaaggcgcaggacaaccaagagttgtacaaacggctggtccgctactgctcattcaagacctacgaggccacgtcgctcgcggaatccatgattgccaccaccaccgccgccaaccccgcgaatatcgccaccttcttcgagcagtggaaaggggacgaggcgataacgacaaaaacacctccaggcaagtgcctcttgagctgcaacaagaccatcggcgaagttaacgccatcctaacctgcggacacacctacatggaagacaggccccccatcatccaccagaacctcaccgtcttgttccatggcggccacccgccgtcactctgcaagagtggatgccttgacggctcgtcgtcagagggtgaggtcctcctcgccaccaagttcaactatatatggagcttgttggatctcatggaagctgtcctaccggaatatctttctgagactgggactgcgacgacgacggcagcaagcagctggcgagctcggcaacctttgctcgtccctgcgattagcgccagcaccacgcgaggcggcctgcggcagtgcggccaggataggaagacagtggagtacctggagtacggcaactggggcgctggggcagagacggccgaccgtgtgaagtggaagggcgtccgggtgatcaccgcggcggaggccaaccgtttcaccgttgatcacttcatcaacggtaaccagtgggtgcccaacttggtcaacggcgagcagatcaactacacccacggtctcatctag
More
|
||||||||||
| Protein seq | MAGSSSLASPRSLQLPLLLLFLLVAAAIGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAESMIATTTAANPANIATFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDRPPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLSETGTATTTAASSWRARQPLLVPAISASTTRGGLRQCGQDRKTVEYLEYGNWGAGAETADRVKWKGVRVITAAEANRFTVDHFINGNQWVPNLVNGEQINYTHGLI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0006040 | OsCMeo_11g0006040.01 | Chr11 | 4702919 | 4706166 | + | NAM | ||
| CDS seq | atggccggctcttcctctcttgcatcgcctcgctcactacagctaccactcctcctccttttcctcctcgttgccgctgcgataggcagctacgaccccaaggcgttctgttccaagacgacagacgtagcatcgtgccttaaggtgttcccgacactcccagacatcgtcaccaaggcgcaggacaaccaagagttgtacaaacggctggtccgctactgctcattcaagacctacgaggccacgtcgctcgcggaatccatgattgccaccaccaccgccgccaaccccgcgaatatcgccaccttcttcgagcagtggaaaggggacgaggcgataacgacaaaaacacctccaggcaagtgcctcttgagctgcaacaagaccatcggcgaagttaacgccatcctaacctgcggacacacctacatggaagacaggccccccatcatccaccagaacctcaccgtcttgttccatggcggccacccgccgtcactctgcaagagtggatgccttgacggctcgtcgtcagagggtgaggtcctcctcgccaccaagttcaactatatatggagcttgttggatctcatggaagctgtcctaccggaatatctttctgagactgggactgcgacgacgacggcagcaagcagctggcgagctcggcaacctttgctcgtccctgcgattagcgccagcaccacgcgaggcggcctgcggcagtgcggccaggataggaagacagtggagtacctggagtacggcaactggggcgctggggcagagacggccgaccgtgtgaagtggaagggcgtccgggtgatcaccgcggcggaggccaaccgtttcaccgttgatcacttcatcaacggtaaccagtgggtgcccaacttggtcaacggcgagcagatcaactacacccacggtctcatctag
More
|
|||||||
| Protein seq | MAGSSSLASPRSLQLPLLLLFLLVAAAIGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAESMIATTTAANPANIATFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDRPPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLSETGTATTTAASSWRARQPLLVPAISASTTRGGLRQCGQDRKTVEYLEYGNWGAGAETADRVKWKGVRVITAAEANRFTVDHFINGNQWVPNLVNGEQINYTHGLI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0006040 | OsCMeo_11g0006040.02 | Chr11 | 4702921 | 4703946 | + | IsoSeq | ||
| CDS seq | atggcggccacccgccgtcactctgcaagagtggatgccttgacggctcgtcgtcagagggtgaggtcctcctcgccaccaagttcaactatatatggagcttgttggatctcatggaagctgtcctaccggaatatctttctgagactgggactgcgacgacgacggtaccatctcccgacgtcgctgcggcggcggccccggccccatgagcaactacatatgcatgcagtcccttcgattcgatcgaccacaccacaacagtgcagtgcatacacgcatatacttactatgtatctaagaaat
More
|
|||||||
| Protein seq | MAATRRHSARVDALTARRQRVRSSSPPSSTIYGACWISWKLSYRNIFLRLGLRRRRYHLPTSLRRRPRPHEQLHMHAVPSIRSTTPQQCSAYTHILTMYLRN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 37.393185 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0192500 | SBH | 0.0 | 0.0 | 11.599611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08760 | RBH | 0.0 | 0.0 | 1.885684 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0192500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006000 | RBH | 0.0 | 0.0 | 17.520166 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006010 | RBH | 0.0 | 0.0 | 17.650223 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006020 | SBH | 0.0 | 0.0 | 10.659677 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005950 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005890 | SBH | 0.0 | 0.0 | 81.872551 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0077500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005970 | SBH | 0.0 | 0.0 | 16.058737 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0078500 | SBH | 0 | 0 | 0.0028765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005950 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006020 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006020 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006050 | SBH | 0.0 | 0.0 | 1.615125 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006030 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006060 | SBH | 0.0 | 0.0 | 9.234823 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005860 | SBH | 0.000000 | 0.000000 | 55.302120 |
