Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0011390 | OGI:10048790 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:15719730-15721137 | ||||||||
| Gene Symbol | OsMB49, MB49, DLN233, OsDLN233, OsMB35, MB35, OsMB22, MB22 | ||||||||||
| DNA seq | cgatccgcgctaaaccagcgtcccttcccttcccaccatgtcccccgccgcccgccgcggcaatccgtccaggtccgcctccgccatcgtggccgacacggccaccgggtaccacctcctcaaggtcgatggctactccctcaccaaggccacccccaccggctcgtccctcacttccacccagttcaccgtcggcggccaccgctggcgcatcaaatactaccccaacggggactccgccgactccgcagactacatatcgatctacctcttgctagatgaaaaggccagcttagatttgaaggtggaggccaagtacctgattagtttcgctgaccaggtgaagacgcaaccttcgctgaaatacaggacagtaagaacttttcatcgtcagggttcttggacttggggctatgggaagttcatcaaaagggaagattttgagaagtccgaccatctcagggacgactctttcaccatccggtgcgacattctcgtcgtccacaagatccacaccaaggagacggcggagatcttacctgtcgaaacatttgtatctgtgccgccatccgacatgaaccagcagttcggcgacctgctggagaccgagaagggcgcggatgtggtgttagaggtcggcggccagacgttcgccgcgcaccggtgcgtgctcgcggcgcggtcgccggtcttcagagcggagctctacggcttgatgaaggaaggcgacactgctggagtcgtgtgcattgaagaaatggaggcgcaagtgttcaaggtgttgctccgctttctgtacactgactcgttgccggagatgaaggaggaggaagacgtcatgtgccagcatctgctcgtcgcggcggaccggtacaacctggagaggctcaagctgatctgcgaggagaagctgtgcaagtacattagcgtgggcacggtatctaacatcctggcgctggctgatcagcaccactgtgacgggctgaagaaagcgtgcttcaattttcttgggtcaccggcgaacctgagtgctgtcgtcgccggtgatggcttcaagcatctttccaagatttgcccctctcttatggaagagctggttgtcgtactggcacttccaggttccagctagtcatgcttagtgacctctagtgttcatgtgttattgcaatggctaatggtagatttttggtttctgaatctgaacctttgtcatcaggtagttggctactgttcttttatgcaggcatgcagctgaactccctgtgtttaggccttttatcatgtatatatgaaattatgactacatcatctatcctaagcagaaattagaaagtacttccacttcatatctgttttttttttttaatatctctgcagcttcattattcaatctcaaatggatttgcac
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| CDS seq | atgtcccccgccgcccgccgcggcaatccgtccaggtccgcctccgccatcgtggccgacacggccaccgggtaccacctcctcaaggtcgatggctactccctcaccaaggccacccccaccggctcgtccctcacttccacccagttcaccgtcggcggccaccgctggcgcatcaaatactaccccaacggggactccgccgactccgcagactacatatcgatctacctcttgctagatgaaaaggccagcttagatttgaaggtggaggccaagtacctgattagtttcgctgaccaggtgaagacgcaaccttcgctgaaatacaggacagtaagaacttttcatcgtcagggttcttggacttggggctatgggaagttcatcaaaagggaagattttgagaagtccgaccatctcagggacgactctttcaccatccggtgcgacattctcgtcgtccacaagatccacaccaaggagacggcggagatcttacctgtcgaaacatttgtatctgtgccgccatccgacatgaaccagcagttcggcgacctgctggagaccgagaagggcgcggatgtggtgttagaggtcggcggccagacgttcgccgcgcaccggtgcgtgctcgcggcgcggtcgccggtcttcagagcggagctctacggcttgatgaaggaaggcgacactgctggagtcgtgtgcattgaagaaatggaggcgcaagtgttcaaggtgttgctccgctttctgtacactgactcgttgccggagatgaaggaggaggaagacgtcatgtgccagcatctgctcgtcgcggcggaccggtacaacctggagaggctcaagctgatctgcgaggagaagctgtgcaagtacattagcgtgggcacggtatctaacatcctggcgctggctgatcagcaccactgtgacgggctgaagaaagcgtgcttcaattttcttgggtcaccggcgaacctgagtgctgtcgtcgccggtgatggcttcaagcatctttccaagatttgcccctctcttatggaagagctggttgtcgtactggcacttccaggttccagctag
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| Protein seq | MSPAARRGNPSRSASAIVADTATGYHLLKVDGYSLTKATPTGSSLTSTQFTVGGHRWRIKYYPNGDSADSADYISIYLLLDEKASLDLKVEAKYLISFADQVKTQPSLKYRTVRTFHRQGSWTWGYGKFIKREDFEKSDHLRDDSFTIRCDILVVHKIHTKETAEILPVETFVSVPPSDMNQQFGDLLETEKGADVVLEVGGQTFAAHRCVLAARSPVFRAELYGLMKEGDTAGVVCIEEMEAQVFKVLLRFLYTDSLPEMKEEEDVMCQHLLVAADRYNLERLKLICEEKLCKYISVGTVSNILALADQHHCDGLKKACFNFLGSPANLSAVVAGDGFKHLSKICPSLMEELVVVLALPGSS |
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| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0011390 | OsCMeo_10g0011390.01 | Chr10 | 15719730 | 15721137 | + | NAM | ||
| CDS seq | atgtcccccgccgcccgccgcggcaatccgtccaggtccgcctccgccatcgtggccgacacggccaccgggtaccacctcctcaaggtcgatggctactccctcaccaaggccacccccaccggctcgtccctcacttccacccagttcaccgtcggcggccaccgctggcgcatcaaatactaccccaacggggactccgccgactccgcagactacatatcgatctacctcttgctagatgaaaaggccagcttagatttgaaggtggaggccaagtacctgattagtttcgctgaccaggtgaagacgcaaccttcgctgaaatacaggacagtaagaacttttcatcgtcagggttcttggacttggggctatgggaagttcatcaaaagggaagattttgagaagtccgaccatctcagggacgactctttcaccatccggtgcgacattctcgtcgtccacaagatccacaccaaggagacggcggagatcttacctgtcgaaacatttgtatctgtgccgccatccgacatgaaccagcagttcggcgacctgctggagaccgagaagggcgcggatgtggtgttagaggtcggcggccagacgttcgccgcgcaccggtgcgtgctcgcggcgcggtcgccggtcttcagagcggagctctacggcttgatgaaggaaggcgacactgctggagtcgtgtgcattgaagaaatggaggcgcaagtgttcaaggtgttgctccgctttctgtacactgactcgttgccggagatgaaggaggaggaagacgtcatgtgccagcatctgctcgtcgcggcggaccggtacaacctggagaggctcaagctgatctgcgaggagaagctgtgcaagtacattagcgtgggcacggtatctaacatcctggcgctggctgatcagcaccactgtgacgggctgaagaaagcgtgcttcaattttcttgggtcaccggcgaacctgagtgctgtcgtcgccggtgatggcttcaagcatctttccaagatttgcccctctcttatggaagagctggttgtcgtactggcacttccaggttccagctag
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| Protein seq | MSPAARRGNPSRSASAIVADTATGYHLLKVDGYSLTKATPTGSSLTSTQFTVGGHRWRIKYYPNGDSADSADYISIYLLLDEKASLDLKVEAKYLISFADQVKTQPSLKYRTVRTFHRQGSWTWGYGKFIKREDFEKSDHLRDDSFTIRCDILVVHKIHTKETAEILPVETFVSVPPSDMNQQFGDLLETEKGADVVLEVGGQTFAAHRCVLAARSPVFRAELYGLMKEGDTAGVVCIEEMEAQVFKVLLRFLYTDSLPEMKEEEDVMCQHLLVAADRYNLERLKLICEEKLCKYISVGTVSNILALADQHHCDGLKKACFNFLGSPANLSAVVAGDGFKHLSKICPSLMEELVVVLALPGSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.299110 | 0.0 | 1.628712 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0427300 | SBH | 0.402729 | 0.097866 | 0.437796 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29310 | RBH | 0.0 | 0.228958 | 0.417693 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0427300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011380 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011640 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011340 | RBH | 0.000000 | 0.845379 | 0.432470 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011800 | RBH | 0.0 | 0.026882 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011530 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0256300 | SBH | 1.4586425 | 0.385446 | 10.366689 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011590 | RBH | 0.0 | 0.0 | 0.367286 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0275500 | SBH | 1.7322945 | 0.14313 | 16.6459345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011260 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011770 | SBH | 0.067045 | 0.393717 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011670 | SBH | 0.0 | 0.0 | 1.664256 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011610 | SBH | 0.0 | 0.0 | 0.494995 |
