Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0007650 | OGI:06066950 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:11065062-11066239 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTTCAAGGCAAATCGACCCAACCCAGTGGCTGATGAAGTTTTGAACCTTTTTTCTAATATCTGTTGAAAATTTGTGTGTTTCTGTTTGAGCCGTACGAGATGAAATTCTCATATACGGTTCTCGGAGGGGGGTTCGGGTTAGTTACCTATCTCAATAAAGTATATGATTGGTTTGAGGAACGTCTTGAGATTCAGGCAATTGCAGATGATATAACTAGTAAATATGTTCCTCCTCATGTCAACATATTTTATTGTTTAGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTACCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCCAACTTTGGTTGGTTAATCTGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTATTTCGTGTGTATCTCACAGGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGGTAATAGGATCACCTTTAGTGGAGTTATTACGTGGAAGTGCTAGTGTGGGTCAATCCACTTTGACTCGTTTTTATAGTTTACATACCTTTGTACTTCCTCTGCTTACTGCCGTATTTATGTTAATGCACTTTCTAATGATACGTAAGCAAGGTATTTCGGGCCCTTTATAAGGAAGGCATCTCATAGAGAGTTTTAATTCTCATATATCATATCGGGTAGGTTGTGGTATTTCATTGCTACAAACATGGGTTATTCTAAAATAAGACATGTCATTTAGATACTTCTCTTCAACTCCGAACTATTGTGATACAAATAATACAAATAGTTGAAGTTAATTTTACGAAAGAAAAGAAGGCGGATTATGGGAGTGTGCGACTTCAATTATTGATTTGGCCATGCAGATAGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATCAACACGTAAGTCCCCTGTCTAGTAAGGATAGGCTGGTTCACTTGAGGAGAATATTTTCTATGATCATACCTCAACCATGTCATCCATGA
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| CDS seq | ATGAAATTCTCATATACGGTTCTCGGAGGGGGGTTCGGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTACCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCCAACTTTGGTTGGTTAATCTGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATCAACACGTAAGTCCCCTGTCTAGTAAGGATAGGCTGGTTCACTTGAGGAGAATATTTTCTATGATCATACCTCAACCATGTCATCCATGA
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| Protein seq | MKFSYTVLGGGFGGNYTYLFSSTSCYRFCYDFLLSPNRYRGFFLGSIHNDRGQLWLVNLISSSMVSKYDGSNDDPARGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPRVGSATLEFTTKGVSISNQHVSPLSSKDRLVHLRRIFSMIIPQPCHP |
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| Function | Cytochrome b6 [UniProtKB/Swiss-Prot:Q6B903] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0007650 | OsCMeo_10g0007650.01 | Chr10 | 11065062 | 11066239 | + | NAM | ||
| CDS seq | ATGAAATTCTCATATACGGTTCTCGGAGGGGGGTTCGGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTACCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCCAACTTTGGTTGGTTAATCTGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCATATCCAATCAACACGTAAGTCCCCTGTCTAGTAAGGATAGGCTGGTTCACTTGAGGAGAATATTTTCTATGATCATACCTCAACCATGTCATCCATGA
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| Protein seq | MKFSYTVLGGGFGGNYTYLFSSTSCYRFCYDFLLSPNRYRGFFLGSIHNDRGQLWLVNLISSSMVSKYDGSNDDPARGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPRVGSATLEFTTKGVSISNQHVSPLSSKDRLVHLRRIFSMIIPQPCHP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 128.177765 | 5.917050 | 105.500198 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g079103B | RBH | 88.223763 | 84.983543 | 34.283031 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21324 | RBH | 288.147827 | 264.427643 | 41.638622 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006750 | SBH | 365.169739 | 33.285862 | 322.667328 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035860 | RBH | 516.208984 | 35.845612 | 601.950195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006830 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006730 | SBH | 70.395493 | 0.498259 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021340 | SBH | 105.224113 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006610 | SBH | 448.440643 | 26.425066 | 453.750824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
