Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0000790 | OGI:10004770 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:1086067-1088977 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATCATCAGGAAAAGAAAAAAAAAAAAAGAAAACCCCGAGGCGGAGAGGTTCGGTTCGGGCGGCGGCGGCGGCGGAGGCCATGAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTCTCCGGCGCGTGGTTCGTCCACAGACCCAGTACAAGGCGCTGACATCAGAGCAAGAGGAGGAGAGGTCGCGCCTCCTCTCCAGGATGGGCGCTTTCTACGTCGACGCGTGCGGCCGCCTCGGCGTGCGGGGGAGTGTCGTCACGCTCGCGCGCCTCTTCGACGCCGGCCTCTGCTTCGGCCTCCTCGACCCCGTCTCCAACATCGTCGTCAACACGCTCGCCACCACCGACATCCGCCCCGACGACGGCACCAACACCAAGGCGGCTGCGCCGTTGCCCTTGCCCTCGCTGCAGGACAAGCTGCCGGAGCTGGGGCGGCGGTCGCTCGACGGCCTCTCCGCCTTCCTCCTCCGCTTCTTCCCCTACCTCGCAGCCTGGGAGGCCGTGCGCTACCTGCTCCGCGCCGACGCCGACCTCCTCGTCGCCGCGCGCCTCGTTGTGGCGGACCGTGGTATGACCAACTTCTCCATCGCCTCTCCCACATCGGTCCTAGCCTTCGAGGGCGCACTCGGTTTGGCCGCGCGCTTGGCCGGACACCCCGATCCCCACCGCCTCCTTTGCATTTGGGTCTCACTGTCTACTCGTCTCCCCGAGGCTGTCAATATGATCTCTCAAGTGCAGGGCTATCGTCCCCATGACACTATCACTTACCGTCTTAGAGATTGGCTGCTTCAAAAGCCCCGGCCATCGCCATCGCCGCCAGCCGCTCTGGACCTGATGCAATCTTGGGACCTTGCAGCTGCTCCTCATGGTGGTAACAGCATCACCACCGACGACATGTTTTCGTATAAGCATCTTCGTGCCCTCCGAATGATGCTTCTTAATACAGTTCATGTCTTCTACTTGAGGGCATTGGCCAGGCTGCCCCGCAACGAGCTGCGACGTCGTTACCACCGCAGCCTGCACATGGCCGGCTCATGTTATGGCCCTTTCGACCCCGTCTCCAACATCATCCTCAATACCATCTGGTACCATGTGAATTTCCCAGCGGCAGAGCTACCGATGCTCGACATGGTCGGTCCACTAAGTCTCAATCGCATCGAGAGCCGCTCTTTCTTTGGTCTTGTGTCCTTCCTACAGACTCGATACACCAGTCTATCTGAGCATGAAACCCTGCAGTGTCTGACCGCCTCCAATGCTGACCTCTCAAGAGCTGATCCCAAGCTCAACGTTGCAGGTGCAGGAGAGGAGCAGCGCCAGCACCCAAGGTACCATCAAGGTAGGAGTAGTTGTTATCTCTCTAGCACCAACTTGCCTGGGTTGTGTAGTGCCATCAGAAAGGTTGAGCAACAAACCCCGTGCACCAGCACCCAAGAAGCCTATGAGGCTGCAGCCGTCGCAGCATGGCACCCCAACCCTGAGGCGCAAGCGCTATTTCTCAGCTCAGTGCAGACGGTGTTGGAGGAATCAGTTTTGTCAATGTTACAGGGCAGAGACAGTCTTACCTCTGAAGATGTGTGTTACATTGCTGACTTGTTATCTCCAAACCATATTCCTGTCCCTGAGGAAATCAAGAGTGATTTCTACCCTGTTATAGCAGGGAAAATGCGCTTTGAGGCTAAACACGAAAGAATCTGCAGGAAAGTGAAGTTTGCACTGGACACATGCTTGGTACACAATGGGGTTGGTAGCTCATTCTCTTCTCTGTTGATTCTTTGCTGTTGTTACTCTTCTAGCTGCATGCATTTGCTCACTTTTGCTTGTTTGTGCAGGATCCCATGTATGAGCTTCATATTATATGTGGGTTGAATGAGTTTGTTTGCGGGCCTGAGCACTGCAAAGATAAGGATGATGCCTTATCTTTTTCTCCTTGCAAATACTGTTATACTCATGTCAACTTTCTTGTGACTCGGAAGAATTTTCCATCTGCTGGGAAATGTCCAATTCTCTTCTTTGCTGAGTTTGGTAACAAGGATGATGATGTGCCCTTATGTGCTGCCATGTGGATGCGCCGACTCCATTTGCTGGTATGCTTTTATTTGTAAGCAATGTCATTCATGTTTCTCGTCACAACTAGCCTGAAGCTCTGCACTTTTCTCCATTTCGGCATGCACATGCTAGTTGGTTTTATCCATTTATCATATATAGGTCTTTTAGGTGGGCATTATCTGATGGAACCAAATCACCCGTTCAGAAAAGCTATTGAACCGAAAGTATTTCAATGGAAAAACAAATTTAAACTTAATAAGTTTAATGGACCCTTAAAATTCGTTTTCAAATATCCCTACATGGTAAAAAGAAATCCACAATCTGTTGAATTTTTCTTTTTCCTGATTTAAAGAATTGTATTTGAGAATTTCTAACCTTTACGACAAAGGAGGCACCTTTAATCTTGTTAATAGTTTATTGAGATATATTTATGTATGTAGTTATTCAAGAATATCTGATAATCCATTTATGGTGTTCCTTATCTGGTTCATGCAACAGAACATGTTCGGTGCTTGTATTGTGAGGCTCAAGGAGCAAGGATTGTGCATCCTTCTTTGGAGAAGTTTTGTGGAGGAGAGGAGTTTGGGGAGGTGATTCAAGGAGAACGCTATTTTACAAATGATCGTCTCATCTGTAAGAGTGAATACTTTGTTCAGAGCTTGGGCGGAAATGAGGAGGATTTCATGTACGTTAATACAGGATAGATCAGTTGATGTGTTGCAATCGCTTCCCATTTGATGAACAAATCTAATATGCAACGGATTATTGACATTGTGAATGTTTGTATCTGTATTGATATCTAGAATATCAATTGTCTATCTAACTCAATTATGTCACATTGACAATGGTTCAAACCTGATTAAGCTAGC
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| CDS seq | ATGAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTCTCCGGCGCGTGGTTCGTCCACAGACCCAGTACAAGGCGCTGACATCAGAGCAAGAGGAGGAGAGGTCGCGCCTCCTCTCCAGGATGGGCGCTTTCTACGTCGACGCGTGCGGCCGCCTCGGCGTGCGGGGGAGTGTCGTCACGCTCGCGCGCCTCTTCGACGCCGGCCTCTGCTTCGGCCTCCTCGACCCCGTCTCCAACATCGTCGTCAACACGCTCGCCACCACCGACATCCGCCCCGACGACGGCACCAACACCAAGGCGGCTGCGCCGTTGCCCTTGCCCTCGCTGCAGGACAAGCTGCCGGAGCTGGGGCGGCGGTCGCTCGACGGCCTCTCCGCCTTCCTCCTCCGCTTCTTCCCCTACCTCGCAGCCTGGGAGGCCGTGCGCTACCTGCTCCGCGCCGACGCCGACCTCCTCGTCGCCGCGCGCCTCGTTGTGGCGGACCGTGGTATGACCAACTTCTCCATCGCCTCTCCCACATCGGTCCTAGCCTTCGAGGGCGCACTCGGTTTGGCCGCGCGCTTGGCCGGACACCCCGATCCCCACCGCCTCCTTTGCATTTGGGTCTCACTGTCTACTCGTCTCCCCGAGGCTGTCAATATGATCTCTCAAGTGCAGGGCTATCGTCCCCATGACACTATCACTTACCGTCTTAGAGATTGGCTGCTTCAAAAGCCCCGGCCATCGCCATCGCCGCCAGCCGCTCTGGACCTGATGCAATCTTGGGACCTTGCAGCTGCTCCTCATGGTGGTAACAGCATCACCACCGACGACATGTTTTCGTATAAGCATCTTCGTGCCCTCCGAATGATGCTTCTTAATACAGTTCATGTCTTCTACTTGAGGGCATTGGCCAGGCTGCCCCGCAACGAGCTGCGACGTCGTTACCACCGCAGCCTGCACATGGCCGGCTCATGTTATGGCCCTTTCGACCCCGTCTCCAACATCATCCTCAATACCATCTGGTACCATGTGAATTTCCCAGCGGCAGAGCTACCGATGCTCGACATGGTCGGTCCACTAAGTCTCAATCGCATCGAGAGCCGCTCTTTCTTTGGTCTTGTGTCCTTCCTACAGACTCGATACACCAGTCTATCTGAGCATGAAACCCTGCAGTGTCTGACCGCCTCCAATGCTGACCTCTCAAGAGCTGATCCCAAGCTCAACGTTGCAGGTGCAGGAGAGGAGCAGCGCCAGCACCCAAGGTACCATCAAGGTAGGAGTAGTTGTTATCTCTCTAGCACCAACTTGCCTGGGTTGTGTAGTGCCATCAGAAAGGTTGAGCAACAAACCCCGTGCACCAGCACCCAAGAAGCCTATGAGGCTGCAGCCGTCGCAGCATGGCACCCCAACCCTGAGGCGCAAGCGCTATTTCTCAGCTCAGTGCAGACGGTGTTGGAGGAATCAGTTTTGTCAATGTTACAGGGCAGAGACAGTCTTACCTCTGAAGATGTGTGTTACATTGCTGACTTGTTATCTCCAAACCATATTCCTGTCCCTGAGGAAATCAAGAGTGATTTCTACCCTGTTATAGCAGGGAAAATGCGCTTTGAGGCTAAACACGAAAGAATCTGCAGGAAAGTGAAGTTTGCACTGGACACATGCTTGGTACACAATGGGGATCCCATGTATGAGCTTCATATTATATGTGGGTTGAATGAGTTTGTTTGCGGGCCTGAGCACTGCAAAGATAAGGATGATGCCTTATCTTTTTCTCCTTGCAAATACTGTTATACTCATGTCAACTTTCTTGTGACTCGGAAGAATTTTCCATCTGCTGGGAAATGTCCAATTCTCTTCTTTGCTGAGTTTGGTAACAAGGATGATGATGTGCCCTTATGTGCTGCCATGTGGATGCGCCGACTCCATTTGCTGAACATGTTCGGTGCTTGTATTGTGAGGCTCAAGGAGCAAGGATTGTGCATCCTTCTTTGGAGAAGTTTTGTGGAGGAGAGGAGTTTGGGGAGGTGA
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| Protein seq | MSGGGGGGGGGLRRVVRPQTQYKALTSEQEEERSRLLSRMGAFYVDACGRLGVRGSVVTLARLFDAGLCFGLLDPVSNIVVNTLATTDIRPDDGTNTKAAAPLPLPSLQDKLPELGRRSLDGLSAFLLRFFPYLAAWEAVRYLLRADADLLVAARLVVADRGMTNFSIASPTSVLAFEGALGLAARLAGHPDPHRLLCIWVSLSTRLPEAVNMISQVQGYRPHDTITYRLRDWLLQKPRPSPSPPAALDLMQSWDLAAAPHGGNSITTDDMFSYKHLRALRMMLLNTVHVFYLRALARLPRNELRRRYHRSLHMAGSCYGPFDPVSNIILNTIWYHVNFPAAELPMLDMVGPLSLNRIESRSFFGLVSFLQTRYTSLSEHETLQCLTASNADLSRADPKLNVAGAGEEQRQHPRYHQGRSSCYLSSTNLPGLCSAIRKVEQQTPCTSTQEAYEAAAVAAWHPNPEAQALFLSSVQTVLEESVLSMLQGRDSLTSEDVCYIADLLSPNHIPVPEEIKSDFYPVIAGKMRFEAKHERICRKVKFALDTCLVHNGDPMYELHIICGLNEFVCGPEHCKDKDDALSFSPCKYCYTHVNFLVTRKNFPSAGKCPILFFAEFGNKDDDVPLCAAMWMRRLHLLNMFGACIVRLKEQGLCILLWRSFVEERSLGR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0000790 | OsCMeo_10g0000790.01 | Chr10 | 1086067 | 1088977 | + | NAM | ||
| CDS seq | ATGAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTCTCCGGCGCGTGGTTCGTCCACAGACCCAGTACAAGGCGCTGACATCAGAGCAAGAGGAGGAGAGGTCGCGCCTCCTCTCCAGGATGGGCGCTTTCTACGTCGACGCGTGCGGCCGCCTCGGCGTGCGGGGGAGTGTCGTCACGCTCGCGCGCCTCTTCGACGCCGGCCTCTGCTTCGGCCTCCTCGACCCCGTCTCCAACATCGTCGTCAACACGCTCGCCACCACCGACATCCGCCCCGACGACGGCACCAACACCAAGGCGGCTGCGCCGTTGCCCTTGCCCTCGCTGCAGGACAAGCTGCCGGAGCTGGGGCGGCGGTCGCTCGACGGCCTCTCCGCCTTCCTCCTCCGCTTCTTCCCCTACCTCGCAGCCTGGGAGGCCGTGCGCTACCTGCTCCGCGCCGACGCCGACCTCCTCGTCGCCGCGCGCCTCGTTGTGGCGGACCGTGGTATGACCAACTTCTCCATCGCCTCTCCCACATCGGTCCTAGCCTTCGAGGGCGCACTCGGTTTGGCCGCGCGCTTGGCCGGACACCCCGATCCCCACCGCCTCCTTTGCATTTGGGTCTCACTGTCTACTCGTCTCCCCGAGGCTGTCAATATGATCTCTCAAGTGCAGGGCTATCGTCCCCATGACACTATCACTTACCGTCTTAGAGATTGGCTGCTTCAAAAGCCCCGGCCATCGCCATCGCCGCCAGCCGCTCTGGACCTGATGCAATCTTGGGACCTTGCAGCTGCTCCTCATGGTGGTAACAGCATCACCACCGACGACATGTTTTCGTATAAGCATCTTCGTGCCCTCCGAATGATGCTTCTTAATACAGTTCATGTCTTCTACTTGAGGGCATTGGCCAGGCTGCCCCGCAACGAGCTGCGACGTCGTTACCACCGCAGCCTGCACATGGCCGGCTCATGTTATGGCCCTTTCGACCCCGTCTCCAACATCATCCTCAATACCATCTGGTACCATGTGAATTTCCCAGCGGCAGAGCTACCGATGCTCGACATGGTCGGTCCACTAAGTCTCAATCGCATCGAGAGCCGCTCTTTCTTTGGTCTTGTGTCCTTCCTACAGACTCGATACACCAGTCTATCTGAGCATGAAACCCTGCAGTGTCTGACCGCCTCCAATGCTGACCTCTCAAGAGCTGATCCCAAGCTCAACGTTGCAGGTGCAGGAGAGGAGCAGCGCCAGCACCCAAGGTACCATCAAGGTAGGAGTAGTTGTTATCTCTCTAGCACCAACTTGCCTGGGTTGTGTAGTGCCATCAGAAAGGTTGAGCAACAAACCCCGTGCACCAGCACCCAAGAAGCCTATGAGGCTGCAGCCGTCGCAGCATGGCACCCCAACCCTGAGGCGCAAGCGCTATTTCTCAGCTCAGTGCAGACGGTGTTGGAGGAATCAGTTTTGTCAATGTTACAGGGCAGAGACAGTCTTACCTCTGAAGATGTGTGTTACATTGCTGACTTGTTATCTCCAAACCATATTCCTGTCCCTGAGGAAATCAAGAGTGATTTCTACCCTGTTATAGCAGGGAAAATGCGCTTTGAGGCTAAACACGAAAGAATCTGCAGGAAAGTGAAGTTTGCACTGGACACATGCTTGGTACACAATGGGGATCCCATGTATGAGCTTCATATTATATGTGGGTTGAATGAGTTTGTTTGCGGGCCTGAGCACTGCAAAGATAAGGATGATGCCTTATCTTTTTCTCCTTGCAAATACTGTTATACTCATGTCAACTTTCTTGTGACTCGGAAGAATTTTCCATCTGCTGGGAAATGTCCAATTCTCTTCTTTGCTGAGTTTGGTAACAAGGATGATGATGTGCCCTTATGTGCTGCCATGTGGATGCGCCGACTCCATTTGCTGAACATGTTCGGTGCTTGTATTGTGAGGCTCAAGGAGCAAGGATTGTGCATCCTTCTTTGGAGAAGTTTTGTGGAGGAGAGGAGTTTGGGGAGGTGA
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| Protein seq | MSGGGGGGGGGLRRVVRPQTQYKALTSEQEEERSRLLSRMGAFYVDACGRLGVRGSVVTLARLFDAGLCFGLLDPVSNIVVNTLATTDIRPDDGTNTKAAAPLPLPSLQDKLPELGRRSLDGLSAFLLRFFPYLAAWEAVRYLLRADADLLVAARLVVADRGMTNFSIASPTSVLAFEGALGLAARLAGHPDPHRLLCIWVSLSTRLPEAVNMISQVQGYRPHDTITYRLRDWLLQKPRPSPSPPAALDLMQSWDLAAAPHGGNSITTDDMFSYKHLRALRMMLLNTVHVFYLRALARLPRNELRRRYHRSLHMAGSCYGPFDPVSNIILNTIWYHVNFPAAELPMLDMVGPLSLNRIESRSFFGLVSFLQTRYTSLSEHETLQCLTASNADLSRADPKLNVAGAGEEQRQHPRYHQGRSSCYLSSTNLPGLCSAIRKVEQQTPCTSTQEAYEAAAVAAWHPNPEAQALFLSSVQTVLEESVLSMLQGRDSLTSEDVCYIADLLSPNHIPVPEEIKSDFYPVIAGKMRFEAKHERICRKVKFALDTCLVHNGDPMYELHIICGLNEFVCGPEHCKDKDDALSFSPCKYCYTHVNFLVTRKNFPSAGKCPILFFAEFGNKDDDVPLCAAMWMRRLHLLNMFGACIVRLKEQGLCILLWRSFVEERSLGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.585813 | 4.238118 | 4.705905 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0116200 | SBH | 0.000000 | 0.592559 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g02670 | SBH | 0.000000 | 0.447780 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0116200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000800 | RBH | 0.304751 | 6.787018 | 4.395906 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000790 | RBH | 0.000000 | 0.000000 | 1.049830 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000770 | SBH | 0.0 | 0.0 | 0.364191 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000730 | RBH | 0.219698 | 0.101395 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000740 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0021300 | RBH | 0.5099095 | 5.9646205 | 3.225337 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000780 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0023600 | RBH | 0.7651615 | 15.6172775 | 1.0502025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000760 | RBH | 0.449562 | 11.570314 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0054610 | RBH | 0.111998 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000750 | RBH | 0.143339 | 0.569241 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000760 | RBH | 0.333310 | 0.573330 | 0.603677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000680 | RBH | 1.324900 | 0.000000 | 0.365568 |
