Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0018150 | OGI:09061900 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:21175431-21178104 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgttgcccagataaggcccctgcgctttctgctgcatcttgggcggatgtcgtctggtccccgcctgctcctcgtccgtccctgtcgcaggaggaagtcgacgcggggtggcgtgtggtgaggcgcaggagtaaaggctcttctgctgccggtcggccaaccaccgcatttactccgccggagccccgtccgattccgcgttggctccacggcagatgctttcgctgcctaggtctggggcaccttaaggcttcctgcagtcaacccccaacttgctatcgttgctggtatccaggtcatatcgagcgcaactgcaaggtcgacatcgacgccacccttcctcggaaagtgccggcggctgcggcgcccaagcgtccccagcatttggccgccagcaccagcgcttctgtcccaggtgacaaggagcatcctcagccggtgcatagcaagacggcgctaccccctactgcgttgcccccgcccgccccggttaagtccgtcagtaccaagccgatggaggaagacattggagctggagacccccctcttgcggccgcaggggggccgtggagtcctgtcctggacccctgggatggccgcgattgagcagcagatgaggaagcgtgcgctggtcacgtcggtgctgtccgggagaagggaggtctcgccggcgatggtggtcgcagctttggggcgtcgctgcagggttccctcggaagatgttcgcatcgaggtcaccaggccctcggacttcctcatctcctttcggcgtgaggaggactgcgcatccgtcctggggtggtccggcaggttcagcgtggagggggcgtcgatctccttccgtcattggcaccgctcagttcatgctcggaggtccaagctcctgtttgtcgtcaagctggccgtggaggggctcccagcgcatgcattggagtttgaagccatcaagcagttcctcaacaagattgactaccagttcatcgaactgttcttgccagtcgacgcatgcatgacggaggtgctggcctggtcggtggacccgtccaaaattcccaaggaattcaccctcgacattccggagccgatgcaagaatggtggatgccgccggtgatggaggaccctgacatacacgagccgctagtctcgcagacaccgccggcgcccccgatagagaagaggtgcctctcgtttgacctgctgatccatgtcctggaagtggttgacccagttcagcagctgctggacagcccccccgatgacccctacaacgacgatcgcgaggctctgcgcaggtgcgcctacggcaccttcctcggcaggatcgatggcaccggcccggttagcctctgggcggtggtcattgtttcgcggggccgaggtcgggaacggctgggggtctccaacgacagcggccccttgagccacgtctagggggccgcatttgctagccgtcacaccgtcggcaccgtcgacggatatctcgggagcagttctggatcgtccttgcgattccgttcaggtggttctttccccgccggagccaacgccagtcgagatggagccggcctccgccttgggctctccgcccgagcacacaccggaagcgatggcgtccttggcatctctgggatccccgccgggcacggccctcggcggtttggaggtggatgtcatctccgacgtggtctcgtcaccgatgctcgcaccggaagggcctgaaacggtcaccatcttgggagcaccggtcgagcacgcgtcaccaaacgaggtgctgatctccatcgagacggtcgtgatggggccgggctcattaactcgcccagcatcagcgccagcaaaactagtggtggacccacatgtaagggagtccctgggtgtggggcttgccaggcaaatatccttcgaagaacccgccagagatttgctgagttcagtggcatttacatcgtcgccacctcttccggctgtggcgccgctggcagttgtggagggcgcgaacctcacgttcaatccgcccggtgagcgggaatcggttcccctttctacaggggcgctggagatggttcttgggccgtggcccgaggtgcacgtcgccagcccacaaatagtctaccgcaaacgccacctcctcccaacctcaggccgcaagtggcctacccatcgggccgctttgggccttactcaggacggctcgccaggggtgccgctttccctggcccactcggagcggacctcgcaggtcattgatggctccctggcgcttcccagcgctgcgttcccagcggccgccgcgtctctctctccgggtgaggcagttccatcgctgggtgaccttgtggcaccccagccagcggcgatcatcggcacgcgtccgcaggcgacaccagctcgatccaaacggcggattgagccatactcccacactccaagacgcagcgaaaggctggccgccattaatggcgggcgacaccagcactcggtgtccaaagcccagcgtgtgctcatgaagaagctcagggtggttgaagacgagagcaaggtggaagacactgacatcctcaaatacttggagctcttcaagtcccctcttgtgccggcccatgtgcaagccttggcggcactgtgcaacgtcaggctgtcgtctcctcagagcgtcgaggtttgctga
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| CDS seq | atggccgttgcccagataaggcccctgcgctttctgctgcatcttgggcggatgtcgtctggtcatatcgagcgcaactgcaaggtcgacatcgacgccacccttcctcggaaagtgccggcggctgcggcgcccaagcgtccccagcatttggccgccagcaccagcgcttctgtcccaggtgacaaggagcatcctcagccggggggccgtggagtcctgtcctggacccctgggatggccgcgattgagcagcagatgaggaagcgtgcgctggtcacgtcggtgctgtccgggagaagggaggtctcgccggcgatggtggtcgcagctttggggcgtcgctgcagggttccctcggaagatgttcgcatcgaggtcaccaggccctcggacttcctcatctcctttcggcgtgaggaggactgcgcatccgtcctggggtggtccggcaggttcagcgtggagggggcgtcgatctccttccgtcattggcaccgctcagttcatgctcggaggtccaagctcctgtttgtcgtcaagctggccgtggaggggctcccagcgcatgcattggagtttgaagccatcaagcagttcctcaacaagattgactaccagttcatcgaactgttcttgccagtcgacgcatgcatgacggaggtgctggcctggtcggtggacccgtccaaaattcccaaggaattcaccctcgacattccggagccgatgcaagaatggtggatgccgccggtgatggaggaccctgacatacacgagccgctagtctcgcagacaccgccggcgcccccgatagagaagaggtgcctctcgtttgacctgctgatccatgtcctggaagtggttgacccagttcagcagctgctggacagcccccccgatgacccctacaacgacgatcgcgaggctctgcgcaggtgcgcctacggcaccttcctcggcaggatcgatggcaccggcccggtggttctttccccgccggagccaacgccagtcgagatggagccggcctccgccttgggctctccgcccgagcacacaccggaagcgatggcgtccttggcatctctgggatccccgccgggcacggccctcggcggtttggaggtggatgtcatctccgacgtggtctcgtcaccgatgctcgcaccggaagggcctgaaacggtcaccatcttgggagcaccggtcgagcacgcgtcaccaaacgaggtgctgatctccatcgagacggtcgtgatggggccgggctcattaactcgcccagcatcagcgccagcaaaactagtggtggacccacatgtaagggagtccctgggtgtggggcttgccaggcaaatatccttcgaagaacccgccagagatttgctgagttcagtggcatttacatcgtcgccacctcttccggctgtggcgccgctggcagttgtggagggcgcgaacctcacgttcaatccgcccggtgagcgggaatcggttcccctttctacaggggcgctggagatggttcttgggccgtggcccgaggtgcacgtcgccagcccacaaatagtctaccgcaaacgccacctcctcccaacctcaggccgcaagtggcctacccatcgggccgctttgggccttactcaggacggctcgccaggggtgccgctttccctggcccactcggagcggacctcgcaggtcattgatggctccctggcgcttcccagcgctgcgttcccagcggccgccgcgtctctctctccgggtgaggcagttccatcgctgggtgaccttgtggcaccccagccagcggcgatcatcggcacgcgtccgcaggcgacaccagctcgatccaaacggcggattgagccatactcccacactccaagacgcagcgaaaggctggccgccattaatggcgggcgacaccagcactcggtgtccaaagcccagcgtgtgctcatgaagaagctcagggtggttgaagacgagagcaaggtggaagacactgacatcctcaaatacttggagctcttcaagtcccctcttgtgccggcccatgtgcaagccttggcggcactgtgcaacgtcaggctgtcgtctcctcagagcgtcgaggtttgctga
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| Protein seq | MAVAQIRPLRFLLHLGRMSSGHIERNCKVDIDATLPRKVPAAAAPKRPQHLAASTSASVPGDKEHPQPGGRGVLSWTPGMAAIEQQMRKRALVTSVLSGRREVSPAMVVAALGRRCRVPSEDVRIEVTRPSDFLISFRREEDCASVLGWSGRFSVEGASISFRHWHRSVHARRSKLLFVVKLAVEGLPAHALEFEAIKQFLNKIDYQFIELFLPVDACMTEVLAWSVDPSKIPKEFTLDIPEPMQEWWMPPVMEDPDIHEPLVSQTPPAPPIEKRCLSFDLLIHVLEVVDPVQQLLDSPPDDPYNDDREALRRCAYGTFLGRIDGTGPVVLSPPEPTPVEMEPASALGSPPEHTPEAMASLASLGSPPGTALGGLEVDVISDVVSSPMLAPEGPETVTILGAPVEHASPNEVLISIETVVMGPGSLTRPASAPAKLVVDPHVRESLGVGLARQISFEEPARDLLSSVAFTSSPPLPAVAPLAVVEGANLTFNPPGERESVPLSTGALEMVLGPWPEVHVASPQIVYRKRHLLPTSGRKWPTHRAALGLTQDGSPGVPLSLAHSERTSQVIDGSLALPSAAFPAAAASLSPGEAVPSLGDLVAPQPAAIIGTRPQATPARSKRRIEPYSHTPRRSERLAAINGGRHQHSVSKAQRVLMKKLRVVEDESKVEDTDILKYLELFKSPLVPAHVQALAALCNVRLSSPQSVEVC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0018150 | OsCMeo_09g0018150.01 | Chr09 | 21175431 | 21178104 | + | NAM | ||
| CDS seq | atggccgttgcccagataaggcccctgcgctttctgctgcatcttgggcggatgtcgtctggtcatatcgagcgcaactgcaaggtcgacatcgacgccacccttcctcggaaagtgccggcggctgcggcgcccaagcgtccccagcatttggccgccagcaccagcgcttctgtcccaggtgacaaggagcatcctcagccggggggccgtggagtcctgtcctggacccctgggatggccgcgattgagcagcagatgaggaagcgtgcgctggtcacgtcggtgctgtccgggagaagggaggtctcgccggcgatggtggtcgcagctttggggcgtcgctgcagggttccctcggaagatgttcgcatcgaggtcaccaggccctcggacttcctcatctcctttcggcgtgaggaggactgcgcatccgtcctggggtggtccggcaggttcagcgtggagggggcgtcgatctccttccgtcattggcaccgctcagttcatgctcggaggtccaagctcctgtttgtcgtcaagctggccgtggaggggctcccagcgcatgcattggagtttgaagccatcaagcagttcctcaacaagattgactaccagttcatcgaactgttcttgccagtcgacgcatgcatgacggaggtgctggcctggtcggtggacccgtccaaaattcccaaggaattcaccctcgacattccggagccgatgcaagaatggtggatgccgccggtgatggaggaccctgacatacacgagccgctagtctcgcagacaccgccggcgcccccgatagagaagaggtgcctctcgtttgacctgctgatccatgtcctggaagtggttgacccagttcagcagctgctggacagcccccccgatgacccctacaacgacgatcgcgaggctctgcgcaggtgcgcctacggcaccttcctcggcaggatcgatggcaccggcccggtggttctttccccgccggagccaacgccagtcgagatggagccggcctccgccttgggctctccgcccgagcacacaccggaagcgatggcgtccttggcatctctgggatccccgccgggcacggccctcggcggtttggaggtggatgtcatctccgacgtggtctcgtcaccgatgctcgcaccggaagggcctgaaacggtcaccatcttgggagcaccggtcgagcacgcgtcaccaaacgaggtgctgatctccatcgagacggtcgtgatggggccgggctcattaactcgcccagcatcagcgccagcaaaactagtggtggacccacatgtaagggagtccctgggtgtggggcttgccaggcaaatatccttcgaagaacccgccagagatttgctgagttcagtggcatttacatcgtcgccacctcttccggctgtggcgccgctggcagttgtggagggcgcgaacctcacgttcaatccgcccggtgagcgggaatcggttcccctttctacaggggcgctggagatggttcttgggccgtggcccgaggtgcacgtcgccagcccacaaatagtctaccgcaaacgccacctcctcccaacctcaggccgcaagtggcctacccatcgggccgctttgggccttactcaggacggctcgccaggggtgccgctttccctggcccactcggagcggacctcgcaggtcattgatggctccctggcgcttcccagcgctgcgttcccagcggccgccgcgtctctctctccgggtgaggcagttccatcgctgggtgaccttgtggcaccccagccagcggcgatcatcggcacgcgtccgcaggcgacaccagctcgatccaaacggcggattgagccatactcccacactccaagacgcagcgaaaggctggccgccattaatggcgggcgacaccagcactcggtgtccaaagcccagcgtgtgctcatgaagaagctcagggtggttgaagacgagagcaaggtggaagacactgacatcctcaaatacttggagctcttcaagtcccctcttgtgccggcccatgtgcaagccttggcggcactgtgcaacgtcaggctgtcgtctcctcagagcgtcgaggtttgctga
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| Protein seq | MAVAQIRPLRFLLHLGRMSSGHIERNCKVDIDATLPRKVPAAAAPKRPQHLAASTSASVPGDKEHPQPGGRGVLSWTPGMAAIEQQMRKRALVTSVLSGRREVSPAMVVAALGRRCRVPSEDVRIEVTRPSDFLISFRREEDCASVLGWSGRFSVEGASISFRHWHRSVHARRSKLLFVVKLAVEGLPAHALEFEAIKQFLNKIDYQFIELFLPVDACMTEVLAWSVDPSKIPKEFTLDIPEPMQEWWMPPVMEDPDIHEPLVSQTPPAPPIEKRCLSFDLLIHVLEVVDPVQQLLDSPPDDPYNDDREALRRCAYGTFLGRIDGTGPVVLSPPEPTPVEMEPASALGSPPEHTPEAMASLASLGSPPGTALGGLEVDVISDVVSSPMLAPEGPETVTILGAPVEHASPNEVLISIETVVMGPGSLTRPASAPAKLVVDPHVRESLGVGLARQISFEEPARDLLSSVAFTSSPPLPAVAPLAVVEGANLTFNPPGERESVPLSTGALEMVLGPWPEVHVASPQIVYRKRHLLPTSGRKWPTHRAALGLTQDGSPGVPLSLAHSERTSQVIDGSLALPSAAFPAAAASLSPGEAVPSLGDLVAPQPAAIIGTRPQATPARSKRRIEPYSHTPRRSERLAAINGGRHQHSVSKAQRVLMKKLRVVEDESKVEDTDILKYLELFKSPLVPAHVQALAALCNVRLSSPQSVEVC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.407231 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017840 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017930 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0353800 | RBH | 0.01193 | 0.0204645 | 0.002287 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0341700 | RBH | 0.03226 | 0.024174 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018180 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018050 | RBH | 0.0 | 0.0 | 0.0 |
