Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0015600 | OGI:09056380 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:19345028-19345935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggagagccaagagcttgcaagctatggcttcttgtggtggcaatggcggcttcttggtcgtgcagttccatggcgatgacgttcactatagcgaactattgttcgcacccgatatggccggggacgctcgccggcgccggcacgccacagctgtcgacgacggggttccggcttgacccggggcagacggcgcagctggcggcgccggcggggtggtcggggaggatatgggcgcggacggggtgcgtgttcgacgccgacggcgccggcgtgtgccagacgggcgactgcggcgggcgcgtggagtgccgcggcgccggcgccgcgccgccggcgacgctgttcgaggtcaccctcgggaggggcggcggcgaggacttctacgacgtgagcctcgtcgacggctacaacctccccgtcgtcgccatccctcgcgccgccgccgcctgcaacgccaccggttgcatggccgacctcaaccgctgtaagtgcacgcacgaacgcgcgccacgccgccgccacttcgccattgccggagctgacgacgacgatgtgtgcagcgtgtccgagggagttgcaggtggagtgcggcggcggcggggcgatcgcgtgcaggagcgcgtgtgaggcgttcgggcaggacaggtactgctgcgccggggagtacgggacgccggcggcgtgccggccgacggcgtactcggccatcttcaagacggcgtgcccgcgcgcctacagctacgcgtacgacgactccacctccaccttcacctgcaaggccgcctacgactacaccatcgccttctgcctccctacctccgggtacgcatgcagctacggaagccaaatttccgaaatttacgacagaagagaaatttctgaaatttaccgatagatctaagaga
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| CDS seq | atgggagagccaagagcttgcaagctatggcttcttgtggtggcaatggcggcttcttggtcgtgcagttccatggcgatgacgttcactatagcgaactattgttcgcacccgatatggccggggacgctcgccggcgccggcacgccacagctgtcgacgacggggttccggcttgacccggggcagacggcgcagctggcggcgccggcggggtggtcggggaggatatgggcgcggacggggtgcgtgttcgacgccgacggcgccggcgtgtgccagacgggcgactgcggcgggcgcgtggagtgccgcggcgccggcgccgcgccgccggcgacgctgttcgaggtcaccctcgggaggggcggcggcgaggacttctacgacgtgagcctcgtcgacggctacaacctccccgtcgtcgccatccctcgcgccgccgccgcctgcaacgccaccggttgcatggccgacctcaaccgctcgtgtccgagggagttgcaggtggagtgcggcggcggcggggcgatcgcgtgcaggagcgcgtgtgaggcgttcgggcaggacaggtactgctgcgccggggagtacgggacgccggcggcgtgccggccgacggcgtactcggccatcttcaagacggcgtgcccgcgcgcctacagctacgcgtacgacgactccacctccaccttcacctgcaaggccgcctacgactacaccatcgccttctgcctccctacctccgggtacgcatgcagctacggaagccaaatttccgaaatttacgacagaagagaaatttctgaaatttaccgatag
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| Protein seq | MGEPRACKLWLLVVAMAASWSCSSMAMTFTIANYCSHPIWPGTLAGAGTPQLSTTGFRLDPGQTAQLAAPAGWSGRIWARTGCVFDADGAGVCQTGDCGGRVECRGAGAAPPATLFEVTLGRGGGEDFYDVSLVDGYNLPVVAIPRAAAACNATGCMADLNRSCPRELQVECGGGGAIACRSACEAFGQDRYCCAGEYGTPAACRPTAYSAIFKTACPRAYSYAYDDSTSTFTCKAAYDYTIAFCLPTSGYACSYGSQISEIYDRREISEIYR |
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| Function | Thaumatin-like protein 1 [UniProtKB/Swiss-Prot:A0A1P8B554] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0015600 | OsCMeo_09g0015600.01 | Chr09 | 19345028 | 19345935 | + | NAM | ||
| CDS seq | atgggagagccaagagcttgcaagctatggcttcttgtggtggcaatggcggcttcttggtcgtgcagttccatggcgatgacgttcactatagcgaactattgttcgcacccgatatggccggggacgctcgccggcgccggcacgccacagctgtcgacgacggggttccggcttgacccggggcagacggcgcagctggcggcgccggcggggtggtcggggaggatatgggcgcggacggggtgcgtgttcgacgccgacggcgccggcgtgtgccagacgggcgactgcggcgggcgcgtggagtgccgcggcgccggcgccgcgccgccggcgacgctgttcgaggtcaccctcgggaggggcggcggcgaggacttctacgacgtgagcctcgtcgacggctacaacctccccgtcgtcgccatccctcgcgccgccgccgcctgcaacgccaccggttgcatggccgacctcaaccgctcgtgtccgagggagttgcaggtggagtgcggcggcggcggggcgatcgcgtgcaggagcgcgtgtgaggcgttcgggcaggacaggtactgctgcgccggggagtacgggacgccggcggcgtgccggccgacggcgtactcggccatcttcaagacggcgtgcccgcgcgcctacagctacgcgtacgacgactccacctccaccttcacctgcaaggccgcctacgactacaccatcgccttctgcctccctacctccgggtacgcatgcagctacggaagccaaatttccgaaatttacgacagaagagaaatttctgaaatttaccgatag
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| Protein seq | MGEPRACKLWLLVVAMAASWSCSSMAMTFTIANYCSHPIWPGTLAGAGTPQLSTTGFRLDPGQTAQLAAPAGWSGRIWARTGCVFDADGAGVCQTGDCGGRVECRGAGAAPPATLFEVTLGRGGGEDFYDVSLVDGYNLPVVAIPRAAAACNATGCMADLNRSCPRELQVECGGGGAIACRSACEAFGQDRYCCAGEYGTPAACRPTAYSAIFKTACPRAYSYAYDDSTSTFTCKAAYDYTIAFCLPTSGYACSYGSQISEIYDRREISEIYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.441682 | 0.0 | 1.046371 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0498300 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32280 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0498300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015370 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015370 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022040 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0323100 | RBH | 0.48673 | 0.4190595 | 0.130366 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0312500 | RBH | 0.487 | 1.79873 | 1.4464085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015120 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015240 | RBH | 0.132510 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015650 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015470 | RBH | 0.0 | 0.0 | 0.0 |
