Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_09g0011630 OGI:09047080 | 15/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr09:16035439-16041087
Gene Symbol -
DNA seq

ttactcaattactgaggaatgactcgggcagtgacccatgccacggtgccactccactttcctccctcccacctcctcgccaccatcagagccatccgtcggaaatcttgcggtgacaaggatgttagtggtgtggggccttttctcccatgagctcccagaggttgcgagcacaaggtgatagatttggaggatggatctggccatgatagtgactgtgatggcggcaacgcggttgaagcgacgacaactatgaccaatggtgttgaagacagttccagtagtggatctagcgctggtgatgctagatccagtagcttcgaggctagatctacgtgaccaacgcgtggtagaggaatgctcgcaaggcatagcaatggcgacactgggcaatggtgagaccgcctgcgtggaggtacggggatgggtgtgagcagttgctgtggcaaccccctcgtgccgacaggatgcggtattggtagcagacacggcgataggaggaaggtgggggttgaccacctttgtgtagaggtgttggcgacaactctcctcttctcgtgcttggtagtcggcgacgggatggcgtctgtgtcgttggctactgcgcagatgagagaccacctgtaaacatagttatacttagctagaatcaacttcaaatacacatgccatatatccggtgtgcactagttaagttatatataggaaagccactatgcatgtgacatgggtttttttttggtaagtgaacaaaatttaaaattttcactactatttgcatatttgcattgcatttgaggtgtaactgtgcagaggaataatattaccaccccttttatttgaatggcttttattggaggataagatgcagttctccttttagaaaatctgcacagtgctttaatctgtatattgcatttattcatggttagatgctaaaaacatgatacttttatgtacagagaagacaagtgtcctcatgtatagtgatccatgtgttcggtgctcatgggtcaccatccactaattaatctttcggtccgcacaaattactacttcctccgtttcatattataagactttctaacgttactcacattcatatatatgttaatgaatctagacatatatgtgtgcctagatttataaacatatatatgaatatgggcaatgttagaaagtcttataacctgaaacggagagagtactactagtctctccatttcaaaataaatgatatgcccatattattagtagagattaagatgtaagaagaaaataatatagcgtttcttattaaatatgatgtactaattgttggtgaaagggtggttaaagataatataatgataaatttaataacaagtaattgatgggaccaatactacttaaaatagcactatttttttaaaaaaattaaatcctaaataaacaccaattttggggctgaaagagtagacacagcatagaaaagaaaacgaacttttcaattgctaatcaatggttgaaccgaaggggaatttttttttaaaaaagttgtccgatctgtttcgttgcaacatccagaatttatcagctactaaagactaaagagtaaccaacattgttggtttcttatcgtaactcatcctaacttattgattaaatatggagaacacacattttttaaataaaaactactaacactatcagcctacacacaaacccctataacacattttttttccaagggactcctaaaatgttgagaacatatatactcccaccattctcttttatgtgacctccaactccaaactaaaaaaacataggtataaatcagcagctaagatagataaagcacacacacataacagaatccaacacatctaataaatgtctcaattcaaagatgatacaatccgaaaccatccaaccatctatgtctttctttccaacttttcccagcaacccgctggaagcgaaaagaagcaaattgcacagatccacacatcattcaaccacgatcgatgaattaaaccgctaagaaatccaggtaaattcgattaagtaatctagtcgaccgacggatcaaactttaaattaaggaaatagtttggtttagcgaccagtaaacgcatgcagaatctgctgggggcagcagctaatgttcgacattgtccatgcatgcatcagcctccagcttagctccttcttcctcggcgccggcgacggcgagatcgattctgcaggtgatcagggcaccagaacgacgccgagattgtcgaggcactggcatttctccttcccctccagcaccgctcctatctggagcccacaaaggtagcagaagaccatgcggcaccttcaaaataaaccgcttgttaattaaataaaaaatgtatgatatgtgtgttagccacactaatacacacacaaacatatacacaaatctgaattatgataacgcatatacataaaagtctattgctccatgtaatctggcaaaatcgtattcccattaaatatataaacatacacctctgtaaaaatcttcacagcaagtttttgaattcaatgtgcttccatatcttggttcatattcaaatctacgccattgaacccccactaaagccattgaacgccagtttacttactacaattaccactcaaaagttcatttaacctggagaaacatcctaatgtgtacgctaaaaccatatcaaaccaaaactatcaagtataatgaaacggattgagagttggagggagtaaatatatatacaccactgtacaaagatgtaattatcattaaacacgagttataccaaacttctaccatggtaaaaatgtttcccaagcatttaatggtgcaaacggaaaaacaaaggaaccaaatatggattagacacaaactaaagcatgtcctaccttgcaatgtaacccaatatatgttgttaacactttctccctacgaaaatgttggataacgaatctacagacaagttcaaacatgaaaaaacaaatgtcccccctataaaaagttagaggacgaatctacaaacacattcaaagatgatacaatcagatgctttgttttttaaaaaccagatgagtgatgtgcaccaaaccgtatacgctatatattactccctccgttttaaaatgtttgacaccgttgactttttagcacatgtttgaccgttcgtcttatattaaaaaaaattgtgaaatatgtaaaactatatgtgtacatgaaagtatatttaacaatgaatcaaattatatgaaaaaaataaataattacttaaattttttgaataagacaaatggtcaaatacgtactgaaaagtcaacggtgtcaaacattttgaaacggagggagtaacaaaacttctgccaacaacatactactttaaaaaaagcgccttgacaaccaaagaaaaacttgacgtcgaataattaagaagaataattaaaaccatatatttgtgctctctatgctatctagcacatagtactaaccacgtattttaactccctatgctatcgaacgcatctcaaactatatgtgggagatacattttctccaaattatgtactacattttcctcaaaaaaaattgtgtaactacatttgaaatgctcgtgatggattaaatagagtaatgaagcaaatgcaagaacctatgaaatgctcatgatggatcataataaatagtagaataatgaagcaaatgcaacaacacaagaagtgaaatgaagtagacagggaggtgagcacagtagtgaagtgagttgagtacctgcaactcatgaccctgcagccggctgtcctctcaaccagcatcctgcatttggggcacgccttccaccgccgctcgtcggcgagcttcttcaccatggcggcctcgggccccttggagcagtcccggtggtcggcgtcgtccgccgtgctccactccccgccgcacgtcgcgcacagcaggtgctggcacgccgggcacgccgccatggccggctccgcctcgccgctggtctccagcaggatcccgcaccggcggttggggcagtacgcccgccggtcgtgcggcacggcgccctcggcgagccggagcccccagtcggtgaacgcggcgaagtcgatggccttcttgcacccctccgggtggagcacgccggcgccgccgtcgccgccgtcggcgcactccgggtccgggcacgccaccggcacggccccctccctcaccttgccgtcgatgtaggtggtcatgcactcgaggcagtacttgtggtcgcaggggaggccgcggaagaggtcgagcatcggcaaggtgtcgaagcagatgccgcagtcgaacgtcgggaggtcgccgtcggcgagggggagcaccctcggccgcctcgtcgacgggccggcctcgtcggggtcgaggtcggatgggcggaggccccacttcttgtagaagtttggcatggagaattcaccttcttcttcttcttcttctccggcgatggcggcggcggtggcgcggggtggtggttgcgccacgacgggcgattttgtgaggtattgcaccgggagaggcccatggagctctgggtcctcttgcagctcggcgatcacggcgtcgcggatgacggagtcgtaccagtcgttgtcgtggccgtcttccatgccggcgaagacggccggcgtgtccctgtcggcgagtagggcctgcctcttcgaggaaaccgagtcgttctcgttcgcgacgttgcggtgaacctcttcttcttcttccatgccgccggcggcgcctcctttgccggcggagatggccggggttctgtgttgcccacacttgccggcagagacggcaggggcggcgtggctcccttctcccgtggtggcggtgacggccgccggggtgtcggcggcggcggcggcggcggtgagctggcggtcggcggcggcaatgcgagtccatatccggccgaactgcgcgacgtttgggcgagggtttgcttgcaatgctgccatgaggttttctgccctagcccaacggccattgccggcgccacgggcatggccggtgccgggagcggcacgagccgccatacgggcggcaggacgtctcccgccgtggcggggagcggcggcgccgccagcgatgaggccgccggggcggagtgagagttcagtagacggcgccatggcagcaggtaggccctgtggtaaggtggcggtagagctcgtgccgatgtcggcggtggcggcgccgcccggcggccgcgggaggaaggccgtcgctgatcttgccggtgccggctgctgtctcgtcgccacggtgcggcgcccaccggatcgtaacggaggcggcacgtacagttggacggtccgcgccgccgccgccgccgccggcgcgtcatcatcatcatcgatgacgatgggttgggccctgctcccggcggcgccggcggcgagggaagacgtcgatcctacgcgatccatcggcggcgcgaagctgctccagtcgtcgtcgcccagctccatcagctgcgacacgtacaggtcacgcgcgaacgcctcgtcgacggcgacatcggcggcggcggcggcggcggcgtggtggctgctcgatgctcctcctccagtcgcagcagggtggggttttcctccttccat

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CDS seq

atggaaggaggaaaaccccaccctgctgcgactggaggaggagcatcgagcagccaccacgccgccgccgccgccgccgccgatgtcgccgtcgacgaggcgttcgcgcgtgacctgtacgtgtcgcagctgatggagctgggcgacgacgactggagcagcttcgcgccgccgatggatcgcgtaggatcgacgtcttccctcgccgccggcgccgccgggagcagggcccaacccatcgtcatcgatgatgatgatgacgcgccggcggcggcggcggcggcgcggaccgtccaactgtacgtgccgcctccgttacgatccggtgggcgccgcaccgtggcgacgagacagcagccggcaccggcaagatcagcgacggccttcctcccgcggccgccgggcggcgccgccaccgccgacatcggcacgagctctaccgccaccttaccacagggcctacctgctgccatggcgccgtctactgaactctcactccgccccggcggcctcatcgctggcggcgccgccgctccccgccacggcgggagacgtcctgccgcccgtatggcggctcgtgccgctcccggcaccggccatgcccgtggcgccggcaatggccgttgggctagggcagaaaacctcatggcagcattgcaagcaaaccctcgcccaaacgtcgcgcagttcggccggatatggactcgcattgccgccgccgaccgccagctcaccgccgccgccgccgccgccgacaccccggcggccgtcaccgccaccacgggagaagggagccacgccgcccctgccgtctctgccggcaagtgtgggcaacacagaaccccggccatctccgccggcaaaggaggcgccgccggcggcatggaagaagaagaagaggttcaccgcaacgtcgcgaacgagaacgactcggtttcctcgaagaggcaggccctactcgccgacagggacacgccggccgtcttcgccggcatggaagacggccacgacaacgactggtacgactccgtcatccgcgacgccgtgatcgccgagctgcaagaggacccagagctccatgggcctctcccggtgcaatacctcacaaaatcgcccgtcgtggcgcaaccaccaccccgcgccaccgccgccgccatcgccggagaagaagaagaagaagaaggtgaattctccatgccaaacttctacaagaagtggggcctccgcccatccgacctcgaccccgacgaggccggcccgtcgacgaggcggccgagggtgctccccctcgccgacggcgacctcccgacgttcgactgcggcatctgcttcgacaccttgccgatgctcgacctcttccgcggcctcccctgcgaccacaagtactgcctcgagtgcatgaccacctacatcgacggcaaggtgagggagggggccgtgccggtggcgtgcccggacccggagtgcgccgacggcggcgacggcggcgccggcgtgctccacccggaggggtgcaagaaggccatcgacttcgccgcgttcaccgactgggggctccggctcgccgagggcgccgtgccgcacgaccggcgggcgtactgccccaaccgccggtgcgggatcctgctggagaccagcggcgaggcggagccggccatggcggcgtgcccggcgtgccagcacctgctgtgcgcgacgtgcggcggggagtggagcacggcggacgacgccgaccaccgggactgctccaaggggcccgaggccgccatggtgaagaagctcgccgacgagcggcggtggaaggcgtgccccaaatgcaggatgctggttgagaggacagccggctgcagggtcatgagttgcaggtgccgcatggtcttctgctacctttgtgggctccagataggagcggtgctggaggggaaggagaaatgccagtgcctcgacaatctcggcgtcgttctgattaaagcactgtgcagattttctaaaaggagaactgcatcttatcctccaataaaagccattcaaataaaaggggtggtggtctctcatctgcgcagtagccaacgacacagacgccatcccgtcgccgactaccaagcacgagaagaggagagttgtcgccaacacctctacacaaaggtggtcaacccccaccttcctcctatcgccgtgtctgctaccaataccgcatcctgtcggcacgagggggttgccacagcaactgctcacacccatccccgtacctccacgcaggcggtctcaccattgcccagtgtcgccattgctatgccttgcgagcattcctctaccacgcgttggtcacgtagatctagcctcgaagctactggatctagcatcaccagcgctagatccactactggaactgtcttcaacaccattggtcatagttgtcgtcgcttcaaccgcgttgccgccatcacagtcactatcatggccagatccatcctccaaatctatcaccttgtgctcgcaacctctgggagctcatgggagaaaaggccccacaccactaacatccttgtcaccgcaagatttccgacggatggctctgatggtggcgaggaggtgggagggaggaaagtggagtggcaccgtggcatgggtcactgcccgagtcattcctcagtaattgagtaa

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Protein seq

MEGGKPHPAATGGGASSSHHAAAAAAADVAVDEAFARDLYVSQLMELGDDDWSSFAPPMDRVGSTSSLAAGAAGSRAQPIVIDDDDDAPAAAAAARTVQLYVPPPLRSGGRRTVATRQQPAPARSATAFLPRPPGGAATADIGTSSTATLPQGLPAAMAPSTELSLRPGGLIAGGAAAPRHGGRRPAARMAARAAPGTGHARGAGNGRWARAENLMAALQANPRPNVAQFGRIWTRIAAADRQLTAAAAAADTPAAVTATTGEGSHAAPAVSAGKCGQHRTPAISAGKGGAAGGMEEEEEVHRNVANENDSVSSKRQALLADRDTPAVFAGMEDGHDNDWYDSVIRDAVIAELQEDPELHGPLPVQYLTKSPVVAQPPPRATAAAIAGEEEEEEGEFSMPNFYKKWGLRPSDLDPDEAGPSTRRPRVLPLADGDLPTFDCGICFDTLPMLDLFRGLPCDHKYCLECMTTYIDGKVREGAVPVACPDPECADGGDGGAGVLHPEGCKKAIDFAAFTDWGLRLAEGAVPHDRRAYCPNRRCGILLETSGEAEPAMAACPACQHLLCATCGGEWSTADDADHRDCSKGPEAAMVKKLADERRWKACPKCRMLVERTAGCRVMSCRCRMVFCYLCGLQIGAVLEGKEKCQCLDNLGVVLIKALCRFSKRRTASYPPIKAIQIKGVVVSHLRSSQRHRRHPVADYQAREEESCRQHLYTKVVNPHLPPIAVSATNTASCRHEGVATATAHTHPRTSTQAVSPLPSVAIAMPCEHSSTTRWSRRSSLEATGSSITSARSTTGTVFNTIGHSCRRFNRVAAITVTIMARSILQIYHLVLATSGSSWEKRPHTTNILVTARFPTDGSDGGEEVGGRKVEWHRGMGHCPSHSSVIE

Function Probable E3 ubiquitin-protein ligase RNF144A-A [UniProtKB/Swiss-Prot:Q5RFV4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_09g0011630 OsCMeo_09g0011630.01 Chr09 16035439 16041087 - NAM
CDS seq

atggaaggaggaaaaccccaccctgctgcgactggaggaggagcatcgagcagccaccacgccgccgccgccgccgccgccgatgtcgccgtcgacgaggcgttcgcgcgtgacctgtacgtgtcgcagctgatggagctgggcgacgacgactggagcagcttcgcgccgccgatggatcgcgtaggatcgacgtcttccctcgccgccggcgccgccgggagcagggcccaacccatcgtcatcgatgatgatgatgacgcgccggcggcggcggcggcggcgcggaccgtccaactgtacgtgccgcctccgttacgatccggtgggcgccgcaccgtggcgacgagacagcagccggcaccggcaagatcagcgacggccttcctcccgcggccgccgggcggcgccgccaccgccgacatcggcacgagctctaccgccaccttaccacagggcctacctgctgccatggcgccgtctactgaactctcactccgccccggcggcctcatcgctggcggcgccgccgctccccgccacggcgggagacgtcctgccgcccgtatggcggctcgtgccgctcccggcaccggccatgcccgtggcgccggcaatggccgttgggctagggcagaaaacctcatggcagcattgcaagcaaaccctcgcccaaacgtcgcgcagttcggccggatatggactcgcattgccgccgccgaccgccagctcaccgccgccgccgccgccgccgacaccccggcggccgtcaccgccaccacgggagaagggagccacgccgcccctgccgtctctgccggcaagtgtgggcaacacagaaccccggccatctccgccggcaaaggaggcgccgccggcggcatggaagaagaagaagaggttcaccgcaacgtcgcgaacgagaacgactcggtttcctcgaagaggcaggccctactcgccgacagggacacgccggccgtcttcgccggcatggaagacggccacgacaacgactggtacgactccgtcatccgcgacgccgtgatcgccgagctgcaagaggacccagagctccatgggcctctcccggtgcaatacctcacaaaatcgcccgtcgtggcgcaaccaccaccccgcgccaccgccgccgccatcgccggagaagaagaagaagaagaaggtgaattctccatgccaaacttctacaagaagtggggcctccgcccatccgacctcgaccccgacgaggccggcccgtcgacgaggcggccgagggtgctccccctcgccgacggcgacctcccgacgttcgactgcggcatctgcttcgacaccttgccgatgctcgacctcttccgcggcctcccctgcgaccacaagtactgcctcgagtgcatgaccacctacatcgacggcaaggtgagggagggggccgtgccggtggcgtgcccggacccggagtgcgccgacggcggcgacggcggcgccggcgtgctccacccggaggggtgcaagaaggccatcgacttcgccgcgttcaccgactgggggctccggctcgccgagggcgccgtgccgcacgaccggcgggcgtactgccccaaccgccggtgcgggatcctgctggagaccagcggcgaggcggagccggccatggcggcgtgcccggcgtgccagcacctgctgtgcgcgacgtgcggcggggagtggagcacggcggacgacgccgaccaccgggactgctccaaggggcccgaggccgccatggtgaagaagctcgccgacgagcggcggtggaaggcgtgccccaaatgcaggatgctggttgagaggacagccggctgcagggtcatgagttgcaggtgccgcatggtcttctgctacctttgtgggctccagataggagcggtgctggaggggaaggagaaatgccagtgcctcgacaatctcggcgtcgttctgattaaagcactgtgcagattttctaaaaggagaactgcatcttatcctccaataaaagccattcaaataaaaggggtggtggtctctcatctgcgcagtagccaacgacacagacgccatcccgtcgccgactaccaagcacgagaagaggagagttgtcgccaacacctctacacaaaggtggtcaacccccaccttcctcctatcgccgtgtctgctaccaataccgcatcctgtcggcacgagggggttgccacagcaactgctcacacccatccccgtacctccacgcaggcggtctcaccattgcccagtgtcgccattgctatgccttgcgagcattcctctaccacgcgttggtcacgtagatctagcctcgaagctactggatctagcatcaccagcgctagatccactactggaactgtcttcaacaccattggtcatagttgtcgtcgcttcaaccgcgttgccgccatcacagtcactatcatggccagatccatcctccaaatctatcaccttgtgctcgcaacctctgggagctcatgggagaaaaggccccacaccactaacatccttgtcaccgcaagatttccgacggatggctctgatggtggcgaggaggtgggagggaggaaagtggagtggcaccgtggcatgggtcactgcccgagtcattcctcagtaattgagtaa

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Protein seq

MEGGKPHPAATGGGASSSHHAAAAAAADVAVDEAFARDLYVSQLMELGDDDWSSFAPPMDRVGSTSSLAAGAAGSRAQPIVIDDDDDAPAAAAAARTVQLYVPPPLRSGGRRTVATRQQPAPARSATAFLPRPPGGAATADIGTSSTATLPQGLPAAMAPSTELSLRPGGLIAGGAAAPRHGGRRPAARMAARAAPGTGHARGAGNGRWARAENLMAALQANPRPNVAQFGRIWTRIAAADRQLTAAAAAADTPAAVTATTGEGSHAAPAVSAGKCGQHRTPAISAGKGGAAGGMEEEEEVHRNVANENDSVSSKRQALLADRDTPAVFAGMEDGHDNDWYDSVIRDAVIAELQEDPELHGPLPVQYLTKSPVVAQPPPRATAAAIAGEEEEEEGEFSMPNFYKKWGLRPSDLDPDEAGPSTRRPRVLPLADGDLPTFDCGICFDTLPMLDLFRGLPCDHKYCLECMTTYIDGKVREGAVPVACPDPECADGGDGGAGVLHPEGCKKAIDFAAFTDWGLRLAEGAVPHDRRAYCPNRRCGILLETSGEAEPAMAACPACQHLLCATCGGEWSTADDADHRDCSKGPEAAMVKKLADERRWKACPKCRMLVERTAGCRVMSCRCRMVFCYLCGLQIGAVLEGKEKCQCLDNLGVVLIKALCRFSKRRTASYPPIKAIQIKGVVVSHLRSSQRHRRHPVADYQAREEESCRQHLYTKVVNPHLPPIAVSATNTASCRHEGVATATAHTHPRTSTQAVSPLPSVAIAMPCEHSSTTRWSRRSSLEATGSSITSARSTTGTVFNTIGHSCRRFNRVAAITVTIMARSILQIYHLVLATSGSSWEKRPHTTNILVTARFPTDGSDGGEEVGGRKVEWHRGMGHCPSHSSVIE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0435250 RBH 0.0 0.0 0.767980
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g26470 RBH 0.0 0.0 0.191905
Nipponbare | IRGSP 1.0 | RAP-db Os09g0435250 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0011430 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_09g0011360 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0017960 SBH 0.0 0.000000 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_09g0011400 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0011590 RBH 0.0 0.0 0.269993
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0266000 RBH 0.0051065 0 0.0048555
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0011550 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0239800 SBH 0.267824 5.8009945 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_09g0011510 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0011310 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0011400 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0011200 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0011300 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G011810 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0011590 RBH 0.0 0.0 0.234279
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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