Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0011620 | OGI:09047060 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:16028757-16034947 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcgatgagaaatcgcgacatatcattatcgtttccgtcaagaacaagaactccgcatatacaaatggagtaatggaaacaggttgaatcgaatgatcgccgactcgctacagaacattactagcaatgattccccagattaagcggacggtctgagcaagtaaggtcgatgaatccgtcttcctcctccgattgtgaagatttgcgaggagtacacttgcatgaatacattctcggattaaaggatgaaccgcagtcgtagcaaaacacagtgccacatctgcaaacaaaatttatcacatgaatgtaagaaatttcatgccgacttaggaagcaccagtgatgtggtggtaaagtcgtgggtgtatgactctacccaccagagttcaaattaatgctggtgctcacaaatattacgcatatatatgtgaactttctaaaaaactttagtgagatcatgtatgtgctcctggtttctatttcttagagcatgtgttaggagacgtattcgcggagatgtgagtgttgtgttgcgtgtgtagtgttgtgtgtgcgtgtaagtttgccgtgtaatcgtaaaaaaatcaaagcataattccataactacgggtctacggctctatttgaatagctgaaagtggtttgatggatcatttattttttttctacagttatttcaaagcataaacaaatgaattataactactgcaaaattgaaagtagctttataaaagcattcaagatgtcacaccccaatccggcaccgccgtacaacagcacctgacaggagcgtgtcgtaggaaaaacggcgtgaaccgcttcctacgaaaccgcgatctcagtaccagtcccaggacatagcgctggtacccacggtgacaaatatgaatcattgcaatccttataataaatagaggacttatttaccttaacttaggttgcattttagaacagcccgagaatgcaaccgacgacacgaacgaggaaacaccaacagcagcagcagcagcggaaccaacggactaacacccaacaccacaggcgacggctgggaactaggacgaaaccctattcttcatttcacttcatcttcatttcaaggtgtaggaactatatatatatttatatagagcaagggtgagtactttcgtactcagcaagtcacgagaatttaggtgtttgatgcaagcttggaagagaggcaaggttgttttgcaaatcctttgttttgaaatcattttgaaattactaagtggtttacttctttctaagtttgggccgaaaagagacttgtgtcttgattcgactttaagagatgtttttcaataactcaattggtaatgtaccgacccccgggtcagatcattacttctcggctcccagagccatttcacttgattaagcggctcccagagccttttcattttctcggacttccagagtccaactgcccagcagcacaacaatccgcttcaactcgggaagcctagtctatgatgcccgtagacatcccgaatcacacagattcgtttcttgaccactcaggtcatccatctgccacataggctgattctggtaacgattcccaaaccacaacaacttttcacaaagcacaggcaaacaaatctacgctacaggaaacacctcacatccgcccatgaccgtgggtacggctgttcgaacagttagttaacctctgcagagggggtacactttacccacacgacattactaacccggatcacccagtccgtgagatcagccatgtcgggagaccctaaggttttcatgacaaggcatttcgaaagccgacacagggttgccatatgccaacgagaggggtcccagaccgacaacaggttaggtcccagaccatattgtgccaggaagcccgagggttctacctgacaccagcccgttgaatccacatgtctcatggcatcatggctcctccgattagctaattactcagccaggggcgtcccattgcacccgtgtggtcgcacttattatatgctcggatgaatttcccacaggaatcggtccttatatgcgaatacaggacagtaccacataggcacaacccccgcatcgcgagttttcacaatctattttgttttcaaacacaccgatgccatatgtcgggttttcaaggctctcaaacacaccgatacaaacaatggtgtatgtggaatagttggtatatgtgctcagagagcacggataccgaagtaccacaaaggtggaacgacaaggaatcagggtagtacaacctacaaaaattagtgcgactactgggtaggtctgtcggtttggcacgcaaaccgaggccaagcaagttaagtgtgtgattctactaatgcaagttgcaaacaaaataataatgattttccaattataggagcaattggtcaaagggtgatttgtcttgctcaaggtcttcacgaagcttcacgtatcttcgagaaaacccacgatcgatgaaaatccggtgaccgcaactatacgcaaacaatcaaaaacctaaacaaaagaccaagaaaaaatatcctatttagactaaataatagtaccattagatagatcacaattttacagaattactggaagtggaacggggtcaatcggatgagcggttgagaagatatggattttcgaagtttattggattttctaatcaaaggaaaaacgatttaataatttattaaaccctttttggaaagaaattaaaggagggatatgatttagacttcctcgggtggctcgggtgcgactcgagaggacaggcacgactcggccgaactaatgggccggccggcccggagaggcggcccaagggggcgcggggagagtgagggagagggagggccggtgggccgagtccaccttgcggggtcccgagtggggcccgcttgtcagtggcgcggctcaccgtggaagcggtgcatgcggcgcgcgctagggttcgggtaggagtggcgcacggattggtgcaccgggtggaccgaaggatggcaggcccacgcgcagccgttaggctctccgtggaccgcgcgcactgagagagagaggagggagcggacccgccttgactcggtcttcaccgaggtggcgctgacgtggcgcctccgtggcatgccacgcaggccggcgagaggaggaagaaagaggccggccgagatggacggcgggcggcgggggtctcaccggagcatggcgcgacggtcttcggccaagggggagcacaccggagtgaagaggggcacgagaggaggcgagccagtggctcggattcgccggaggaagatcgacgacggcggattgcggcgacgcacgccggcggtgagaaaaaaagggggaaacggcggaggggcgacaaggattcaactcaaggtggtgggagtatctctgggagtcggggattctgtttccggcgccggatagggtggaggagcaccgaggagggctagcgtcgacggcggcctctaggagctgacggtaatggcggcgaggccatgccaggcgacggcattgctatggaatggtttggggaggccctagggagttcaaggacggtgttggctagggtggtcgacgagctggggcccgacgacggcgcgcgactgtgtgccgcggctgaaaaagcgcaacggcgaggcgcgcggcgcattgtgcggcaggaggaggaatacggtggggagctcaccggtgagggaggagcggtgttggcgacgcggagggagtcgcggcgaggtggtcgcgacggcggggcggcgcggaaccgagagggcgcggccgagaaaaggagggaggcagcgaggccgaaaggatgatgagtgtgtgcacacgctcttggccacggcagtgcggcaccgagcttgacgaggccgacgccgaggctcacgcggccattggcacaacgcggcagcgaggaggcagtcgcggaggggcgggggcgagcagctggcggccggcaacaatggcgcgggtggttcgagcgaggtgaagacgaaacgagaggggagggcgcgggctttataggcgaggaggagaggtcggtttggaggagggaaaccgacattggcggtcaagggagctcggttggtgttcacgggcggcagcggcggtttcgttggcagtgcgaaagcggcgacggtgtggatgtgttgggcggcgaaggcggtggatcgagcggcggaaattgaaccgcgagcgcgggctggcgcggcttggcgtggtcaaagtgggggcggcgaactggcgcgcggcgtcagcggcgttctgcctccgcgcgcaatggcatgggcgtgagagagaggtcgagtctgagagggaaaaaggggaaaagagggagaaaaaggggaggcttgtccatgccgttctgggaggaagagtgagaggggagcgcgagcgctggctcccgtctttggagggtagcggcaatgggcatcgggagagaggagagagaacgagagagagaaaagagagctctctctctctcggccatggcgcacgcgcgagcggcgctcgagggaaggggagagcggctgggagagggaagtgggctgaggggaaaatggcccacaacacccgagggaggcaaaataaacttctgcatagagatttgagttgggaggatattgggattggaatttggattggagagaatttgagaaggattttggaatttaaccttgatacttggcctctaggaacataaggtggagtcaagggaaggattcgaggtgggatttgaataattttggattcgaagaagtatttggcgaggattcaaggaaggatttgaatttcgaagacttgaattggaatagaaatcttgaggtggacgattttgatggcgatgagagggaacaaggacggatttgaattgagatccatggcacgacttagactcgcacataaagaaaagaaatttttgcaatcaggattttgccgaattagtttttaacgtcttgctaaaagcgcggcgttacaatattttagtaagaaaacttttacacaaaatgcattggttagcagtttgagaaacaagcaaatatttctttaaaaaagattttattttctccataaataatggtcagttaccgctaagatatttctctcccttttcagcgtccacttcgcgagggaagttcagtacgtgttcggtcaagtcaacaacggttagtcaaaactaacgaatggaatacgtgtttcagatgagtggcgaaaatttcgccccgatttcgaagtttggaagcaaagtttagagatttgagtctagcgatcgaaattaaagattgaatcgaagaggaggatcggagtagtggtgaatcgatgagtttacctgcatgtcatgcgcttgcacccatcgatcttgtcgatcatggcgcggcagctggggcagcgccgccactcgcgccccttggcgagctgggtcagcgcgcaccgtgcgccgccgtcgccgccgccgccgccgccatggcggtcgtcccacggctcctcgcactgcaggcagaacgcgcgggaacaggtcgggcaggacgccttggacgccgcggcgcgcaggggcagggccgcggccgccgcctcgccctcgagcgccgccatctcgccgcagtcgcggtaggggcaccgcgcgcgcgcggggccgacggcgcgctcgcagagcgcgacgcaccaccggtcgaacacgtcgatgtcgagcagcttcttgcagcgctccgggtgcatgacgccgccgccggagcagccgcccccgcccgccaggaggcacggcacgggcacgctccccgccgcgacgcgggcctcgatgtggccgacgacgcaggcgacgcagaacgcgtgggggcagccgtcggagacgcggaaccggtcgaacaccagcttccactccatgcagacctcgcagtagaaccgcccgatctcgtcgtcggtgagcggccgcacgcggcccgcgcgggacgacgacgacgacggcgggtccagcatggagccccggatcagctcctgcaggtactgctcccggtcgagctcctgcgccgccgacgccgacgccgacgccgcggcgctcgccatgggagggggacgacgcgtacttggcgctaattcttcggcgagaaggaactaggaagtggatggagtggacttgggctagtgcgggtcgtcgtcgtcgttggtcgcgatcccttt
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| CDS seq | atggcgagcgccgcggcgtcggcgtcggcgtcggcggcgcaggagctcgaccgggagcagtacctgcaggagctgatccggggctccatgctggacccgccgtcgtcgtcgtcgtcccgcgcgggccgcgtgcggccgctcaccgacgacgagatcgggcggttctactgcgaggtctgcatggagtggaagctggtgttcgaccggttccgcgtctccgacggctgcccccacgcgttctgcgtcgcctgcgtcgtcggccacatcgaggcccgcgtcgcggcggggagcgtgcccgtgccgtgcctcctggcgggcgggggcggctgctccggcggcggcgtcatgcacccggagcgctgcaagaagctgctcgacatcgacgtgttcgaccggtggtgcgtcgcgctctgcgagcgcgccgtcggccccgcgcgcgcgcggtgcccctaccgcgactgcggcgagatggcggcgctcgagggcgaggcggcggccgcggccctgcccctgcgcgccgcggcgtccaaggcgtcctgcccgacctgttcccgcgcgttctgcctgcagtgcgaggagccgtgggacgaccgccatggcggcggcggcggcggcgacggcggcgcacggtgcgcgctgacccagctcgccaaggggcgcgagtggcggcgctgccccagctgccgcgccatgatcgacaagatcgatgggtgcaagcgcatgacatgcaggtaa
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| Protein seq | MASAAASASASAAQELDREQYLQELIRGSMLDPPSSSSSRAGRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCLLAGGGGCSGGGVMHPERCKKLLDIDVFDRWCVALCERAVGPARARCPYRDCGEMAALEGEAAAAALPLRAAASKASCPTCSRAFCLQCEEPWDDRHGGGGGGDGGARCALTQLAKGREWRRCPSCRAMIDKIDGCKRMTCR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0011620 | OsCMeo_09g0011620.01 | Chr09 | 16034099 | 16034833 | - | NAM | ||
| CDS seq | atggcgagcgccgcggcgtcggcgtcggcgtcggcggcgcaggagctcgaccgggagcagtacctgcaggagctgatccggggctccatgctggacccgccgtcgtcgtcgtcgtcccgcgcgggccgcgtgcggccgctcaccgacgacgagatcgggcggttctactgcgaggtctgcatggagtggaagctggtgttcgaccggttccgcgtctccgacggctgcccccacgcgttctgcgtcgcctgcgtcgtcggccacatcgaggcccgcgtcgcggcggggagcgtgcccgtgccgtgcctcctggcgggcgggggcggctgctccggcggcggcgtcatgcacccggagcgctgcaagaagctgctcgacatcgacgtgttcgaccggtggtgcgtcgcgctctgcgagcgcgccgtcggccccgcgcgcgcgcggtgcccctaccgcgactgcggcgagatggcggcgctcgagggcgaggcggcggccgcggccctgcccctgcgcgccgcggcgtccaaggcgtcctgcccgacctgttcccgcgcgttctgcctgcagtgcgaggagccgtgggacgaccgccatggcggcggcggcggcggcgacggcggcgcacggtgcgcgctgacccagctcgccaaggggcgcgagtggcggcgctgccccagctgccgcgccatgatcgacaagatcgatgggtgcaagcgcatgacatgcaggtaa
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| Protein seq | MASAAASASASAAQELDREQYLQELIRGSMLDPPSSSSSRAGRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCLLAGGGGCSGGGVMHPERCKKLLDIDVFDRWCVALCERAVGPARARCPYRDCGEMAALEGEAAAAALPLRAAASKASCPTCSRAFCLQCEEPWDDRHGGGGGGDGGARCALTQLAKGREWRRCPSCRAMIDKIDGCKRMTCR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0011620 | OsCMeo_09g0011620.02 | Chr09 | 16028757 | 16034947 | - | IsoSeq | ||
| CDS seq | aagggatcgcgaccaacgacgacgacgacccgcactagcccaagtccactccatccacttcctagttccttctcgccgaag |
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| Protein seq | KGSRPTTTTTRTSPSPLHPLPSSFSPK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.314884 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0434900 | RBH | 0.343771 | 0.453433 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26460 | RBH | 0.355673 | 0.499864 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0434900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011420 | RBH | 0.304394 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011350 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017960 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011580 | RBH | 0.0 | 0.0 | 0.880384 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0265900 | RBH | 0.8717585 | 12.33211 | 0.116011 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011540 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0255800 | RBH | 1.627787 | 23.2943565 | 0.277627 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011500 | RBH | 0.103960 | 0.082362 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011390 | RBH | 0.0 | 5.234260 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011580 | RBH | 0.0 | 9.316464 | 1.203919 |
