Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0010990 | OGI:09045290 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:15375263-15378543 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctttaggggagagggcgagggcgagggctcctcccatggtcgtgcggcgcacggccgtcctcctcctcctcctacatctcgtgctcgtcatcgccgcagcggctgccgcggtggatgggcgtcggccagccgaggcgatcgtcggcgggtggcggcggcagcggcggctcctgatgcaggagaaggccacgctgctggccttgaagcggggcttcacgttgctgtcgccgaagctgcttgctgattggaacgactccaacaccgacgtgtgcggcttcaccggcgtcgcctgcgaccggaggcggcagcacgtcgtcggccttcagctctccaacatgagcatcaacggctccatcccgccggcgctcgcccagctgccgcacctccggtacctcgacctgtccgacaaccacatctccggcgccgtcccctcattcctcagcaacctcacgcaactccggaagctcgacatatcgaaaaatcagctctccggcgccatcccaccgtccttcggcaacctcacgaacctcgagatccttgatatgtccatcaatgttctcacaggccgaatcccagaagagctctccaacatcggcaagctcaaaggcctcaacctcggccagaacaacctcgtcggcagcataccggcgtcattcacccagctgaagaacttgttctacctcagcctcgagaagaactccttgtcaggttctatccccgccacgatcttcacaaattgcacgcaaatgggtgtattcgacctcggcgacaacaacatcaccggcgagatccccggcgacgcctcggatagcctttccgacagtttcgccgtccttaatctctactccaacagcctcaccgggaggcttccgcggtggctcgccaactgcacttttctctacctgctggacgtggagaataactcgctcgccgacgatctgccgaccgccatcatctccggcttgcgcaacctcaggtacctgcatttgtcgaacaacgtccatttcgcgagcggcgacggcaacaccaacctggggcccttcttcgccgcggtgtcgaactgcaccagcatactggagatcgaggccggagcactggggatcggcgggcggctgccaagcttgctcggctcgctgctgccgcctaacatgtcacacctcaacctggagctcaacgccatcgaaggcccgatccccgccgacatcggcgacgtgataaacatcacgctgatgaacctgtcgagcaacctgctcaacgggacgatcccgacgtccatctgctggctgccgaatctgcagcagctcgacctgtcccgcaactcgctcaccggccccgtgccggcgtgcatcagcaacgccacgagcctcggcgagctggacctgtcgagcaacgcgctgtcggggagcatcccgagcagcatcggcagcctgaagctgtcctacctctccctgcacaggaaccagctgtccggcgagataccggcgagcctcggccagcatctcggcattgtgcggctcgacctctccagcaaccgactgaccggcgagatacctgacgccgtcgccggcattgtccagatgtcgctgaacctctctcgtaacctgctcggcggccggctgccgagggggctcagcaggttgcagatggcggaggtcatcgacctgtcatggaacaatctcaccggcgcgatcttcccggagctcggcgcctgcgccgagctgcaggtcctcgacctgtcgcacaactcgctcaccggcgtcctcccgtcgtcgctcgacggcctcgagagcatcgagcgcctcgacgtctccgacaactccctcaccggcgagatcccgcagagcctgaccaaatgcacgacgctcacctacctcaacctgtcgtacaacgacctcgccggcgtcgtgcccaccgccggcgtcttcgccaacttcacctcgacgtcgtaccttggcaacccgcggctctgcggcgccgtgctcgggcgccgctgcgggaggcgacaccggtggtaccaatcccggaagttcttggtcgtgatgtgcatctgcgccgccgcgctggcgttcatgctgacgatcctctgcgcggtcagcatccggaagatccgggagcggctggcggcggtgcgggaggagttcaggaggggccgacgccgcggcggcggcggctcgtcgccggtgatgaagtacaagttcccgcggatcacgtaccgggagctggtcgaggcgacggaggagttcagcccggaccggctcgtcggcacgggcagctacggccgcgtgtaccgcggcacgctgcgcgacggcaccatggtcgccgtgaaggtgctccagctgcagtccgggaactccaccaagagcttcaaccgcgagtgccaggtgctgaagcgcatccgccaccggaacctcatgcggatcgtcacggcgtgcagcctgccggacttcaaggcgctggtgctgccgttcatggcgaacggcagcctcgagcggtgcctctatgcggggccgccggccggcgagctgagcctcgtgcagcgcgtcaacatctgcagcgacatcgccgaggggatggcctacctgcaccaccactccccggtcaaggtcatccactgcgacctcaagcccagcaacgtgctcatcaacgacgacatgaccgctctcgtctccgacttcggcatctcccgcctcgtcatgagcgtcggcggcgtcgccaacgccgccgacgtcggcgcctccaccgccaacatgctctgcggctccatcggatacattcctccaggtaaattaaccatcatcatcaagcaaactcatcatcattttttttcatgacgaattctaatcgattcgattccgaagaatacgggtatggctcgaacccgacgacgaagggcgacgtgtacagcttcggcgtgctggtgctggagatggtgacgaggaagaagccgatcgacgacatgttcgacgcggagctgagcttgcacaagtgggtgaagaaccactaccacggccgggccgacgcggtggtcgacccggcgctggcgcgcatggtgcgggaccagacgccggaggtcaggaggatgtccgacgtggccatcggcgagctgctggagctcggcatcctctgcacgcaggagagcgcggccgtgcgcccgaccatgatggacgccgccgacgacctggaccggctcaagcggtacatcggcggtgagaccacggccacgttcgcgtcgtcgctgggcttctcatcctcaacatttgaagatctcgacgactag
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| CDS seq | atggctttaggggagagggcgagggcgagggctcctcccatggtcgtgcggcgcacggccgtcctcctcctcctcctacatctcgtgctcgtcatcgccgcagcggctgccgcggtggatgggcgtcggccagccgaggcgatcgtcggcgggtggcggcggcagcggcggctcctgatgcaggagaaggccacgctgctggccttgaagcggggcttcacgttgctgtcgccgaagctgcttgctgattggaacgactccaacaccgacgtgtgcggcttcaccggcgtcgcctgcgaccggaggcggcagcacgtcgtcggccttcagctctccaacatgagcatcaacggctccatcccgccggcgctcgcccagctgccgcacctccggtacctcgacctgtccgacaaccacatctccggcgccgtcccctcattcctcagcaacctcacgcaactccggaagctcgacatatcgaaaaatcagctctccggcgccatcccaccgtccttcggcaacctcacgaacctcgagatccttgatatgtccatcaatgttctcacaggccgaatcccagaagagctctccaacatcggcaagctcaaaggcctcaacctcggccagaacaacctcgtcggcagcataccggcgtcattcacccagctgaagaacttgttctacctcagcctcgagaagaactccttgtcaggttctatccccgccacgatcttcacaaattgcacgcaaatgggtgtattcgacctcggcgacaacaacatcaccggcgagatccccggcgacgcctcggatagcctttccgacagtttcgccgtccttaatctctactccaacagcctcaccgggaggcttccgcggtggctcgccaactgcacttttctctacctgctggacgtggagaataactcgctcgccgacgatctgccgaccgccatcatctccggcttgcgcaacctcaggtacctgcatttgtcgaacaacgtccatttcgcgagcggcgacggcaacaccaacctggggcccttcttcgccgcggtgtcgaactgcaccagcatactggagatcgaggccggagcactggggatcggcgggcggctgccaagcttgctcggctcgctgctgccgcctaacatgtcacacctcaacctggagctcaacgccatcgaaggcccgatccccgccgacatcggcgacgtgataaacatcacgctgatgaacctgtcgagcaacctgctcaacgggacgatcccgacgtccatctgctggctgccgaatctgcagcagctcgacctgtcccgcaactcgctcaccggccccgtgccggcgtgcatcagcaacgccacgagcctcggcgagctggacctgtcgagcaacgcgctgtcggggagcatcccgagcagcatcggcagcctgaagctgtcctacctctccctgcacaggaaccagctgtccggcgagataccggcgagcctcggccagcatctcggcattgtgcggctcgacctctccagcaaccgactgaccggcgagatacctgacgccgtcgccggcattgtccagatgtcgctgaacctctctcgtaacctgctcggcggccggctgccgagggggctcagcaggttgcagatggcggaggtcatcgacctgtcatggaacaatctcaccggcgcgatcttcccggagctcggcgcctgcgccgagctgcaggtcctcgacctgtcgcacaactcgctcaccggcttcttggtcgtgatgtgcatctgcgccgccgcgctggcgttcatgctgacgatcctctgcgcggtcagcatccggaagatccgggagcggctggcggcggtgcgggaggagttcaggaggggccgacgccgcggcggcggcggctcgtcgccggtgatgaagtacaagttcccgcggatcacgtaccgggagctggtcgaggcgacggaggagttcagcccggaccggctcgtcggcacgggcagctacggccgcgtgtaccgcggcacgctgcgcgacggcaccatggtcgccgtgaaggtgctccagctgcagtccgggaactccaccaagagcttcaaccgcgagtgccaggtgctgaagcgcatccgccaccggaacctcatgcggatcgtcacggcgtgcagcctgccggacttcaaggcgctggtgctgccgttcatggcgaacggcagcctcgagcggtgcctctatgcggggccgccggccggcgagctgagcctcgtgcagcgcggcgacgtgtacagcttcggcgtgctggtgctggagatggtgacgaggaagaagccgatcgacgacatgttcgacgcggagctgagcttgcacaagtgggtgaagaaccactaccacggccgggccgacgcggtggtcgacccggcgctggcgcgcatggtgcgggaccagacgccggaggtcaggaggatgtccgacgtggccatcggcgagctgctggagctcggcatcctctgcacgcaggagagcgcggccgtgcgcccgaccatgatggacgccgccgacgacctggaccggctcaagcggtacatcggcggtgagaccacggccacgttcgcgtcgtcgctgggcttctcatcctcaacatttgaagatctcgacgactag
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| Protein seq | MALGERARARAPPMVVRRTAVLLLLLHLVLVIAAAAAAVDGRRPAEAIVGGWRRQRRLLMQEKATLLALKRGFTLLSPKLLADWNDSNTDVCGFTGVACDRRRQHVVGLQLSNMSINGSIPPALAQLPHLRYLDLSDNHISGAVPSFLSNLTQLRKLDISKNQLSGAIPPSFGNLTNLEILDMSINVLTGRIPEELSNIGKLKGLNLGQNNLVGSIPASFTQLKNLFYLSLEKNSLSGSIPATIFTNCTQMGVFDLGDNNITGEIPGDASDSLSDSFAVLNLYSNSLTGRLPRWLANCTFLYLLDVENNSLADDLPTAIISGLRNLRYLHLSNNVHFASGDGNTNLGPFFAAVSNCTSILEIEAGALGIGGRLPSLLGSLLPPNMSHLNLELNAIEGPIPADIGDVINITLMNLSSNLLNGTIPTSICWLPNLQQLDLSRNSLTGPVPACISNATSLGELDLSSNALSGSIPSSIGSLKLSYLSLHRNQLSGEIPASLGQHLGIVRLDLSSNRLTGEIPDAVAGIVQMSLNLSRNLLGGRLPRGLSRLQMAEVIDLSWNNLTGAIFPELGACAELQVLDLSHNSLTGFLVVMCICAAALAFMLTILCAVSIRKIRERLAAVREEFRRGRRRGGGGSSPVMKYKFPRITYRELVEATEEFSPDRLVGTGSYGRVYRGTLRDGTMVAVKVLQLQSGNSTKSFNRECQVLKRIRHRNLMRIVTACSLPDFKALVLPFMANGSLERCLYAGPPAGELSLVQRGDVYSFGVLVLEMVTRKKPIDDMFDAELSLHKWVKNHYHGRADAVVDPALARMVRDQTPEVRRMSDVAIGELLELGILCTQESAAVRPTMMDAADDLDRLKRYIGGETTATFASSLGFSSSTFEDLDD |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0010990 | OsCMeo_09g0010990.01 | Chr09 | 15375263 | 15378543 | + | NAM | ||
| CDS seq | atggctttaggggagagggcgagggcgagggctcctcccatggtcgtgcggcgcacggccgtcctcctcctcctcctacatctcgtgctcgtcatcgccgcagcggctgccgcggtggatgggcgtcggccagccgaggcgatcgtcggcgggtggcggcggcagcggcggctcctgatgcaggagaaggccacgctgctggccttgaagcggggcttcacgttgctgtcgccgaagctgcttgctgattggaacgactccaacaccgacgtgtgcggcttcaccggcgtcgcctgcgaccggaggcggcagcacgtcgtcggccttcagctctccaacatgagcatcaacggctccatcccgccggcgctcgcccagctgccgcacctccggtacctcgacctgtccgacaaccacatctccggcgccgtcccctcattcctcagcaacctcacgcaactccggaagctcgacatatcgaaaaatcagctctccggcgccatcccaccgtccttcggcaacctcacgaacctcgagatccttgatatgtccatcaatgttctcacaggccgaatcccagaagagctctccaacatcggcaagctcaaaggcctcaacctcggccagaacaacctcgtcggcagcataccggcgtcattcacccagctgaagaacttgttctacctcagcctcgagaagaactccttgtcaggttctatccccgccacgatcttcacaaattgcacgcaaatgggtgtattcgacctcggcgacaacaacatcaccggcgagatccccggcgacgcctcggatagcctttccgacagtttcgccgtccttaatctctactccaacagcctcaccgggaggcttccgcggtggctcgccaactgcacttttctctacctgctggacgtggagaataactcgctcgccgacgatctgccgaccgccatcatctccggcttgcgcaacctcaggtacctgcatttgtcgaacaacgtccatttcgcgagcggcgacggcaacaccaacctggggcccttcttcgccgcggtgtcgaactgcaccagcatactggagatcgaggccggagcactggggatcggcgggcggctgccaagcttgctcggctcgctgctgccgcctaacatgtcacacctcaacctggagctcaacgccatcgaaggcccgatccccgccgacatcggcgacgtgataaacatcacgctgatgaacctgtcgagcaacctgctcaacgggacgatcccgacgtccatctgctggctgccgaatctgcagcagctcgacctgtcccgcaactcgctcaccggccccgtgccggcgtgcatcagcaacgccacgagcctcggcgagctggacctgtcgagcaacgcgctgtcggggagcatcccgagcagcatcggcagcctgaagctgtcctacctctccctgcacaggaaccagctgtccggcgagataccggcgagcctcggccagcatctcggcattgtgcggctcgacctctccagcaaccgactgaccggcgagatacctgacgccgtcgccggcattgtccagatgtcgctgaacctctctcgtaacctgctcggcggccggctgccgagggggctcagcaggttgcagatggcggaggtcatcgacctgtcatggaacaatctcaccggcgcgatcttcccggagctcggcgcctgcgccgagctgcaggtcctcgacctgtcgcacaactcgctcaccggcttcttggtcgtgatgtgcatctgcgccgccgcgctggcgttcatgctgacgatcctctgcgcggtcagcatccggaagatccgggagcggctggcggcggtgcgggaggagttcaggaggggccgacgccgcggcggcggcggctcgtcgccggtgatgaagtacaagttcccgcggatcacgtaccgggagctggtcgaggcgacggaggagttcagcccggaccggctcgtcggcacgggcagctacggccgcgtgtaccgcggcacgctgcgcgacggcaccatggtcgccgtgaaggtgctccagctgcagtccgggaactccaccaagagcttcaaccgcgagtgccaggtgctgaagcgcatccgccaccggaacctcatgcggatcgtcacggcgtgcagcctgccggacttcaaggcgctggtgctgccgttcatggcgaacggcagcctcgagcggtgcctctatgcggggccgccggccggcgagctgagcctcgtgcagcgcggcgacgtgtacagcttcggcgtgctggtgctggagatggtgacgaggaagaagccgatcgacgacatgttcgacgcggagctgagcttgcacaagtgggtgaagaaccactaccacggccgggccgacgcggtggtcgacccggcgctggcgcgcatggtgcgggaccagacgccggaggtcaggaggatgtccgacgtggccatcggcgagctgctggagctcggcatcctctgcacgcaggagagcgcggccgtgcgcccgaccatgatggacgccgccgacgacctggaccggctcaagcggtacatcggcggtgagaccacggccacgttcgcgtcgtcgctgggcttctcatcctcaacatttgaagatctcgacgactag
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| Protein seq | MALGERARARAPPMVVRRTAVLLLLLHLVLVIAAAAAAVDGRRPAEAIVGGWRRQRRLLMQEKATLLALKRGFTLLSPKLLADWNDSNTDVCGFTGVACDRRRQHVVGLQLSNMSINGSIPPALAQLPHLRYLDLSDNHISGAVPSFLSNLTQLRKLDISKNQLSGAIPPSFGNLTNLEILDMSINVLTGRIPEELSNIGKLKGLNLGQNNLVGSIPASFTQLKNLFYLSLEKNSLSGSIPATIFTNCTQMGVFDLGDNNITGEIPGDASDSLSDSFAVLNLYSNSLTGRLPRWLANCTFLYLLDVENNSLADDLPTAIISGLRNLRYLHLSNNVHFASGDGNTNLGPFFAAVSNCTSILEIEAGALGIGGRLPSLLGSLLPPNMSHLNLELNAIEGPIPADIGDVINITLMNLSSNLLNGTIPTSICWLPNLQQLDLSRNSLTGPVPACISNATSLGELDLSSNALSGSIPSSIGSLKLSYLSLHRNQLSGEIPASLGQHLGIVRLDLSSNRLTGEIPDAVAGIVQMSLNLSRNLLGGRLPRGLSRLQMAEVIDLSWNNLTGAIFPELGACAELQVLDLSHNSLTGFLVVMCICAAALAFMLTILCAVSIRKIRERLAAVREEFRRGRRRGGGGSSPVMKYKFPRITYRELVEATEEFSPDRLVGTGSYGRVYRGTLRDGTMVAVKVLQLQSGNSTKSFNRECQVLKRIRHRNLMRIVTACSLPDFKALVLPFMANGSLERCLYAGPPAGELSLVQRGDVYSFGVLVLEMVTRKKPIDDMFDAELSLHKWVKNHYHGRADAVVDPALARMVRDQTPEVRRMSDVAIGELLELGILCTQESAAVRPTMMDAADDLDRLKRYIGGETTATFASSLGFSSSTFEDLDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.743150 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0423200 | RBH | 0.049667 | 0.227852 | 0.272723 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25540 | RBH | 0.025834 | 0.143132 | 0.065569 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0423200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010740 | RBH | 0.071156 | 1.972289 | 0.476668 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010700 | RBH | 0.048277 | 0.401461 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017500 | RBH | 0.0 | 0.877397 | 1.125027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010820 | RBH | 0.0 | 2.469421 | 0.344533 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0256300 | RBH | 0.6087705 | 2.815175 | 0.2087405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010820 | RBH | 0.0 | 0.016999 | 0.112655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0244300 | RBH | 0.8163755 | 2.775014 | 1.075585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010780 | RBH | 0.0 | 0.068864 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010570 | RBH | 0.194148 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010730 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010520 | RBH | 0.0 | 0.0 | 0.420626 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010570 | RBH | 0.0 | 0.419710 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011060 | RBH | 0.0 | 0.0 | 0.181454 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010850 | RBH | 0.407975 | 1.646838 | 0.0 |
