Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0010950 | OGI:09045270 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:15342405-15348689 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaggagaagaaaaagggaaatacacttttttcattacttttgcccttccatttcatctgtgtattttctttccagatgccaaaaaatacaatcggaaagaacatagctctatcattgtagaaatactaacaaataattttagagaaactaaagagaggtaggtgggtgtggggaacctgaatgaatttatttacacatgaggagaccttttaagtaaatctatcatctgtaccgcaccatgagttgttagctgcacagcatcactccatgatcaccaggggatgttcaacgttcttttggtctattatttcatctctacaaactccttgtatgtttgcacaatatgttcatatcgccagaggctcaacttgcactggtgtacctgttcagaaggctggtctgggacttgcagatcttcccttagattgtcaaatcatatgagcaattccaggcctcagttgtgtgagatgcgtccgcaggctggactcctgtacctgattaaaaatacaacagctctaggtaaggctttgtgtatgaactgttgccatcatgggcagtttgccatcaattacagagaaattacattatttgatattcaagggggctctgcgctcagatttaggaaagattacatgggattacattggaagtacctgtagttttgctgccatagctaataattctctgcattcatcaagcatggccttttcttgtcttgctataactgaaagttctgataccaaatatgtcctgtcctcaacctggtaagataatacagtatgaaactaagccaggtttgggcagtttgctgtaaatttgtaattttaaaaccctccccttcttaataaattttggctggcccagcggAaaaaaaaaactaagcaaccaatgaaaagaacttgatagaagatggagggtgttctttattagatacttaaaaattaaaatctattgtatattcatcctcagaaaccagtgcagggttccttcTttttttttttttgagtaaagtgcattagcggtccttaaacttgtagggttatgtcatataggtccctaaactctcaaaatgcatatccaggtcacagaacttatcaaagtgtatcacctaggtcccaaattgacacatcccctataggatcctacgtgtcgctgatgtggcaatgccacatggacgtgacgtgcctttttcttttttttcttcttttctttttctttttcgttttcttctcattcttctttttttttcctttcttctgcacggatcacatagaaaggagaagaaaggggaaaaacgagaagaaaaaaaagaaaaaaaaataaatgggtcctatttgtcagtcaaaataatgccacgtcatgtctgtgtggcatgccacattaacgccacgtaaaatcataaaggggttgtggcgatttgggacctagatgacacactatgacaagttttgggacttggatatgcattttgagagtttagggacctagatgacacacccctacaagtttaaggaccgcccctacactttactctttttttttcagggaattagagatctctaactgtcacaaagatgagtagatgactacaggcgggcatggaagatcacaaccagagataatattttccttataaaaggtaattcttgtgctaaatgtgtactaaacaatgagctaacaaaatcagcttcatatggttaaaaaaatgatttccaaagacagataaaagtggacagtaaaattttcagttgtatgcgcactgttagctgacctttggaagcatacagcgaaccgctgatcccaaaccttgcatgatatcaacagcagagcttacggcattcttaagagcaactacatcagcctgttaacacaataattaaaaccattagccataatcacaaagtagcagttaataatgaagaaattacgaaattgtttgcgatttcagtaatgcaacattttacagcatacctttgctcctgatgtaactggaagacgcaatgtgcttgcttttagagcttcagttgcgtggaataatgaaatactgttctccttttcaagtgctggccattgttcaaggtaatcaatctgaatcaaaataacagcagattaaaaatttgttgtatgcatttgacaatttatattttctcttatcattgtagataccgattactctgtgttgcatacttaatttttgcatatataatagcgatgcctccctgatacaacacaatatttagactttgtgctttctaagcacattattttgaattttcctgacactgctttgattgcaaagaagaagatgttagtgttgtcatgtgatctgctggagtagattaaatgttctctctgctgtccaatagaggataaatgatctcttgcaaacccctacttttcaaatctcacgtctcaccatctttagaaaaccaaagtgtgacataacaagctcacaactatgtccttattgtgcagttcaatgtatttacttcaacattgctaagttatcctaagtttatcctatttgcatcagaagactctttttactctgtaaccagcctttatctttcacagaagagactacatagcaaattgtttatatttactttcaccagccgtgcttcgattatgagcattatagcaagtctgtgccaacctgacacaagttgggattatatctgaacgcgtgataacttgcattttagaacaaccttggtagattatacaattataaaaatcattaatgagtgggaagagcttacctgctctttaagaatgccatgtagcttcaacacttgttgtatgcattgaaccatgattcttctcatattaacaacatcccgcaagttcgaggtattcctcaaaacattatatataatactctgttttacatgacaacatagaaagaactttcaacaattaaagatcactaaaaaaataatggcaaatattaaaggagagtacatctacacacccaagagactaatgctaagaaatagcagacctcaaatttacagtgcaaaatcaattgtcagtttttaagtcaaacaaataaccaccagtagatctagctgatattttacttaatcacatttcatagtctggaagcttgttttaattgatcataaagaaaagtaatctcaaaagcttatcagatcaggaagcaaatcattgcataaacacacttatggacctatggttatgttggtatccatcaaaggaggacactgcaaagggaacaaggaagactgtgcaatgtgatgcaaaccaaatgctaactttacctcagctgtcactttttggaaagacatagtatcttctgcataagcatttacaaagatccattgcaagtatctattataagacaggcgcaattggtggatattttcaatttggctggagttcttctttcctttttttgcatcaaccatgtagctaataataggtgacgcaacacctgattgaatacttccagcactttgtgaccggctaggtgttgaaggccttgtccgagatgggctctgaaaggacctagaaatagaggatgtaactgaagaggccttgcttggcgaagatgagcgatgaagaacaggaacaggtaaagtaactgccctacttggacggctaacggatttacatctctctgttgactgtgaataagcatgacagcgagagtctactttgtcatctcttccacctgcatgaatagccaatctccttgctacctcatccaatgatttattaaaccctttgcctgtgccttcagaagcaagcgtcttccttggtgaaacacctctagaaatatttgttgaagggactgatctgccagctttgtcagacatgtcaatactccttgacaaaatattgctggccacacggccactctgcattgctggccagcggtgttgttcgattaccctcctaggttggtcctctgagggttgagcattctcacattgttcaccaatgttcttccttctcagaggactcctcttcctctcggctataacactagcttgccccttcgtttgatccaaagatccactggggactaccttatcctttttattaccaggggtaaccacagattctgactggaaagaggaagataggtttcgcattgctggccacaagccatcagtattccttgtgcttgttattcgcctagaactcttatgtccctctgtaacagtattacgaactggtgtgacagaccttgatgcaggggtggagggtgttgacactctagaagaaggagttgagggccttcttctgtctgctgattgagctctttttggttctggtgtgcattcatttgcggaggtccgcccaggacttggtgatgtgcatctccttgctgtggtggcagcagaatgagcagacagaccattcttgtacctggaagcaacatctctcccacggtttactggagaagcattatgcttctcggatggaactagcggtggtcttagagtctcattgagaataccagtcttcttcacatcactcttgaggacatccatgaagaattgcaacttccacagtagtaacaacgtcaagatgactcatgaaacttgaaccccttggcaaactgagatctaccaaacatccaaagaagaacaccaaacaatcagaaggtttcgaatacaaaaagcaataatctatttaacttgaagtaagcaagagaaacttctcacatatacaaataaataagcaataaaaaggtaatgcagatatcgcagatggctgaattcagaaatgagatgctgctataccagttcaaggaccaaaaatatttacagctatgattgttgctgcaattcctctcacagggatatcgaaggcagattggtgatgggaagtgatctaatagtggcttggaagcaagggaggagggtggcatttatgaatacattgcacatccattacagaacataaaaaaaaagatattttgggtaaaatcacagctgctacatgggatcatgcagcattcgagaaaggacgaagcaaataaacaaactgtttgcggagattctgatggttttggaacagacaggacaatccacatgcatgagatgagacgaatctctttgctagaaaaaagtttaataatttctcatcagaagcagcatgggaaacagggaccttttttaatgattaccacttatgaaccatgcacatgcattgagattttgtatgctccaatacagacaaagagaaaaaatataacagtggacatagtgccaaataaaattggcagagttcacttgaagttgccgggaattttcttcgatcaaatcgactaaccaaacgcaaaaacaatatcacactcaaaggcaacagcatgatgcttacattgttgggctctaaattagataatcctagctagaagaattcacccagcaagagcaaatcaaccacatatagcatagatggaggcatattccctggctcttaggattcacaacaggggatttgtacggctcgatcgccataaattggtttaactagcacataatttaaaaatgcactgtttactaccccaagcaccgaaatcacctataataacagctcaaagtacggagaaaaagtaatttcgcagttaaataaaattaactctccctagatacagacaacgaacaaggcaacaagccaatagaaaccatgccaagccagattcctcagaactcacgccgcaacaccctagttccccacggaatccgccgcgagaaacccaaaccacgcaccaggatcatccgagaacagcgacgaagccaatccggactcgccgatgctccatccccgtcaaaacccacgcggcggaggcgcggagcaccatccaaacatcgtcctagcctacgagctccaaaccccctcttccttccccccctagctcaatcggattcaatcaaaaacacaccgcagcttctctccacgccaaccaaaccgtaactactgcaccaagtaaacgtggaacctcacctcagcgatcgcggcgagacccccaaactgctctcctcctcctcgccgcaacgccgccgggtcgtgggatcccgtggacaagcagccggggaaccctcgcggagtcgcagcgactagtccactacttaccgatttctcggcgggaggggagaggagaggggagggcagcggcgtggaaggggagatggaggagaaggacggttgccgcgggggcgagggcgcaattaaggaagaccaaacggtttccctaattgcgcgcttctcttgttgttaagccatggaggactactactaaaccccac
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| CDS seq | atggatgtcctcaagagtgatgtgaagaagactggtattctcaatgagactctaagaccaccgctagttccatccgagaagcataatgcttctccagtaaaccgtgggagagatgttgcttccaggtacaagaatggtctgtctgctcattctgctgccaccacagcaaggagatgcacatcaccaagtcctgggcggacctccgcaaatgaatgcacaccagaaccaaaaagagctcaatcagcagacagaagaaggccctcaactccttcttctagagtgtcaacaccctccacccctgcatcaaggtctgtcacaccagttcgtaatactgttacagagggacataagagttctaggcgaataacaagcacaaggaatactgatggcttgtggccagcaatgcgaaacctatcttcctctttccagtcagaatctgtggttacccctggtaataaaaaggataaggtagtccccagtggatctttggatcaaacgaaggggcaagctagtgttatagccgagaggaagaggagtcctctgagaaggaagaacattggtgaacaatgtgagaatgctcaaccctcagaggaccaacctaggagggtaatcgaacaacaccgctggccagcaatgcagagtggccgtgtggccagcaatattttgtcaaggagtattgacatgtctgacaaagctggcagatcagtcccttcaacaaatatttctagaggtgtttcaccaaggaagacgcttgcttctgaaggcacaggcaaagggtttaataaatcattggatgaggtagcaaggagattggctattcatgcaggtggaagagatgacaaagtagactctcgctgtcatgcttattcacagtcaacagagagatgtaaatccgttagccgtccaagtagggcagttactttacctgttcctgttcttcatcgctcatcttcgccaagcaaggcctcttcagttacatcctctatttctaggtcctttcagagcccatctcggacaaggccttcaacacctagccggtcacaaagtgctggaagtattcaatcaggtgttgcgtcacctattattagctacatggttgatgcaaaaaaaggaaagaagaactccagccaaattgaaaatatccaccaattgcgcctgtcttataatagatacttgcaatggatctttgtaaatgcttatgcagaagatactatgtctttccaaaaagtgacagctgagagtattatatataatgttttgaggaatacctcgaacttgcgggatgttgttaatatgagaagaatcatggttcaatgcatacaacaagtgttgaagctacatggcattcttaaagagcagattgattaccttgaacaatggccagcacttgaaaaggagaacagtatttcattattccacgcaactgaagctctaaaagcaagcacattgcgtcttccagttacatcaggagcaaaggctgatgtagttgctcttaagaatgccgtaagctctgctgttgatatcatgcaaggtttgggatcagcggttcgctgtatgcttccaaaggttgaggacaggacatatttggtatcagaactttcagttatagcaagacaagaaaaggccatgcttgatgaatgcagagaattattagctatggcagcaaaactacaggtacaggagtccagcctgcggacgcatctcacacaactgaggcctggaattgctcatatgatttga
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| Protein seq | MDVLKSDVKKTGILNETLRPPLVPSEKHNASPVNRGRDVASRYKNGLSAHSAATTARRCTSPSPGRTSANECTPEPKRAQSADRRRPSTPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRRITSTRNTDGLWPAMRNLSSSFQSESVVTPGNKKDKVVPSGSLDQTKGQASVIAERKRSPLRRKNIGEQCENAQPSEDQPRRVIEQHRWPAMQSGRVASNILSRSIDMSDKAGRSVPSTNISRGVSPRKTLASEGTGKGFNKSLDEVARRLAIHAGGRDDKVDSRCHAYSQSTERCKSVSRPSRAVTLPVPVLHRSSSPSKASSVTSSISRSFQSPSRTRPSTPSRSQSAGSIQSGVASPIISYMVDAKKGKKNSSQIENIHQLRLSYNRYLQWIFVNAYAEDTMSFQKVTAESIIYNVLRNTSNLRDVVNMRRIMVQCIQQVLKLHGILKEQIDYLEQWPALEKENSISLFHATEALKASTLRLPVTSGAKADVVALKNAVSSAVDIMQGLGSAVRCMLPKVEDRTYLVSELSVIARQEKAMLDECRELLAMAAKLQVQESSLRTHLTQLRPGIAHMI |
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| Function | AUGMIN subunit 8 [UniProtKB/Swiss-Prot:Q9SUH5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0010950 | OsCMeo_09g0010950.01 | Chr09 | 15342405 | 15348689 | - | NAM | ||
| CDS seq | atggatgtcctcaagagtgatgtgaagaagactggtattctcaatgagactctaagaccaccgctagttccatccgagaagcataatgcttctccagtaaaccgtgggagagatgttgcttccaggtacaagaatggtctgtctgctcattctgctgccaccacagcaaggagatgcacatcaccaagtcctgggcggacctccgcaaatgaatgcacaccagaaccaaaaagagctcaatcagcagacagaagaaggccctcaactccttcttctagagtgtcaacaccctccacccctgcatcaaggtctgtcacaccagttcgtaatactgttacagagggacataagagttctaggcgaataacaagcacaaggaatactgatggcttgtggccagcaatgcgaaacctatcttcctctttccagtcagaatctgtggttacccctggtaataaaaaggataaggtagtccccagtggatctttggatcaaacgaaggggcaagctagtgttatagccgagaggaagaggagtcctctgagaaggaagaacattggtgaacaatgtgagaatgctcaaccctcagaggaccaacctaggagggtaatcgaacaacaccgctggccagcaatgcagagtggccgtgtggccagcaatattttgtcaaggagtattgacatgtctgacaaagctggcagatcagtcccttcaacaaatatttctagaggtgtttcaccaaggaagacgcttgcttctgaaggcacaggcaaagggtttaataaatcattggatgaggtagcaaggagattggctattcatgcaggtggaagagatgacaaagtagactctcgctgtcatgcttattcacagtcaacagagagatgtaaatccgttagccgtccaagtagggcagttactttacctgttcctgttcttcatcgctcatcttcgccaagcaaggcctcttcagttacatcctctatttctaggtcctttcagagcccatctcggacaaggccttcaacacctagccggtcacaaagtgctggaagtattcaatcaggtgttgcgtcacctattattagctacatggttgatgcaaaaaaaggaaagaagaactccagccaaattgaaaatatccaccaattgcgcctgtcttataatagatacttgcaatggatctttgtaaatgcttatgcagaagatactatgtctttccaaaaagtgacagctgagagtattatatataatgttttgaggaatacctcgaacttgcgggatgttgttaatatgagaagaatcatggttcaatgcatacaacaagtgttgaagctacatggcattcttaaagagcagattgattaccttgaacaatggccagcacttgaaaaggagaacagtatttcattattccacgcaactgaagctctaaaagcaagcacattgcgtcttccagttacatcaggagcaaaggctgatgtagttgctcttaagaatgccgtaagctctgctgttgatatcatgcaaggtttgggatcagcggttcgctgtatgcttccaaaggttgaggacaggacatatttggtatcagaactttcagttatagcaagacaagaaaaggccatgcttgatgaatgcagagaattattagctatggcagcaaaactacaggtacaggagtccagcctgcggacgcatctcacacaactgaggcctggaattgctcatatgatttga
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| Protein seq | MDVLKSDVKKTGILNETLRPPLVPSEKHNASPVNRGRDVASRYKNGLSAHSAATTARRCTSPSPGRTSANECTPEPKRAQSADRRRPSTPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRRITSTRNTDGLWPAMRNLSSSFQSESVVTPGNKKDKVVPSGSLDQTKGQASVIAERKRSPLRRKNIGEQCENAQPSEDQPRRVIEQHRWPAMQSGRVASNILSRSIDMSDKAGRSVPSTNISRGVSPRKTLASEGTGKGFNKSLDEVARRLAIHAGGRDDKVDSRCHAYSQSTERCKSVSRPSRAVTLPVPVLHRSSSPSKASSVTSSISRSFQSPSRTRPSTPSRSQSAGSIQSGVASPIISYMVDAKKGKKNSSQIENIHQLRLSYNRYLQWIFVNAYAEDTMSFQKVTAESIIYNVLRNTSNLRDVVNMRRIMVQCIQQVLKLHGILKEQIDYLEQWPALEKENSISLFHATEALKASTLRLPVTSGAKADVVALKNAVSSAVDIMQGLGSAVRCMLPKVEDRTYLVSELSVIARQEKAMLDECRELLAMAAKLQVQESSLRTHLTQLRPGIAHMI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.658921 | 4.378360 | 8.439703 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0422600 | RBH | 2.338698 | 1.928988 | 4.402338 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25500 | RBH | 1.566499 | 1.279075 | 1.103803 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0422600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010700 | RBH | 0.916711 | 9.615087 | 2.633734 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010660 | RBH | 0.386399 | 1.328468 | 2.819077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017440 | RBH | 0.0 | 0.000000 | 3.037264 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010710 | RBH | 0.068342 | 0.223834 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010810 | RBH | 7.235587 | 12.725539 | 11.650831 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0256200 | RBH | 4.071921 | 7.5533205 | 7.0895135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010810 | RBH | 0.379331 | 0.566123 | 1.250544 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0244100 | RBH | 7.355788 | 18.095473 | 6.798931 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010770 | RBH | 0.150343 | 0.190242 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010560 | RBH | 0.493322 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010720 | RBH | 6.404943 | 2.477150 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010510 | RBH | 0.514383 | 0.0 | 1.593447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010560 | RBH | 0.285121 | 4.044402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011050 | RBH | 0.579845 | 2.466786 | 1.885690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010840 | RBH | 1.250754 | 11.263982 | 7.578070 |
