Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0008120 | OGI:09036550 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:12418738-12420570 | ||||||||
| Gene Symbol | VQ35, OsVQ35 | ||||||||||
| DNA seq | ACCACATGTAAACACGCCAGCCAAGTCGCACTCGCCTCGTCGTCCTCCTCCCTCCGCCCGCTTCTcccccctcctcctccccccttttgtccccgccagaacgtgctccgaacccagcagccgcagccgccgccgccccgcctcgccttgtcttctcttctccctttttataccaccaaggcttcctctccttcccctttctccctcccctctccgcgatggtcgtttcgagtcggtgagcgagcgattcaggtggttggcttgggggggagttgcacacttgcaccggtgggtgatggattctggtaatagtggagggagtctccagtcgtcgagcggcggcgacgacgagttcgattcgcggggaggcggtggtggtggtggggtggactcctcgccgctgtcggcgctgctccgcccctcctcgtcgtcggggttctcgctccacggcggatcgatgtacgggttccaggagctcggctcggtggggacgtcgttgcagcatcagcagggggtgcagctgcagccctggtcggcggcgcagttcgcggcgggggcgccgtcctcgtcgtcgccgcgtgtcgccgccgacgcgggcgtggcgggggcgcaccagcagcagcagcagcagcagcagggtgatccgtcgtcagagggggcgggggcgggggcggcggtggccgcggcgccggcgagggggtcgaggaagcggacgcgggcgtcgcggcgggcgcccacgacggtgctgaccaccgacacctccaacttccgcgccatggtgcaggagttcaccgggatcccttcgccgccgttcgtcgcgggcgtcggggcacccgccgcctcgctccgcacgcgcttcgaccacctcttcccctcgccggcgtccgccctccgctccgccgccgccggcgatccggcctcctcgctgccgccgtacctcctccgccccttcgcgcagaagctccccacggcggcgtcccctttcccgccctacacgtcctcgtcctcgtcgacgccgttgtccacgtcaacgccgtcctcctccaacctcgccgccgccaatgccaatgccaccacgacgagcacggccgcagccaccaccgccacgtccgtcaacccgaccgcggccgccggagccggcgacaccttccagctgacgCccgccgcgctcctccggatgcagcacgatgcgaccagcagcagcggcagctacctctccttccccagcgtcctcgccgccgcgtcgcagcccatgttcggcggcttcgcgcagggcggcggcggcggcgcgcggctgcacgacgcctcgccgtccccgtcgttctcggagttcctcggcggcggcatcagcctcaccgacggcggcggcttgatgtcctccgacgccctgcaccaccacctccccacaagaaacgacgcccaccaccacggcggcgacgagctgtccggcgtcgtcgcgtccggcagctgcaagctcaactacacctcccacgccggcgcaccatcgtcatcacaagccgccgccgccgacaagccgccggatggctccaccgccgccgcgcggcccgcccgaggcgagggcctcgacccatggatctgtacatccgagtagtagacagaacagaaagcatcatcatcacactgttctcttctgattcttgtcaactagtggcaccaagcaccaagcacaagaacgaacacgacgccatagccgccatgcatcacaaacaacaaaggtctgatcgattttaatttttacttagcctttttagctgtatactcacttcatgttactactattattactgaaattaatcaccacttcttcgactt
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| CDS seq | atggattctggtaatagtggagggagtctccagtcgtcgagcggcggcgacgacgagttcgattcgcggggaggcggtggtggtggtggggtggactcctcgccgctgtcggcgctgctccgcccctcctcgtcgtcggggttctcgctccacggcggatcgatgtacgggttccaggagctcggctcggtggggacgtcgttgcagcatcagcagggggtgcagctgcagccctggtcggcggcgcagttcgcggcgggggcgccgtcctcgtcgtcgccgcgtgtcgccgccgacgcgggcgtggcgggggcgcaccagcagcagcagcagcagcagcagggtgatccgtcgtcagagggggcgggggcgggggcggcggtggccgcggcgccggcgagggggtcgaggaagcggacgcgggcgtcgcggcgggcgcccacgacggtgctgaccaccgacacctccaacttccgcgccatggtgcaggagttcaccgggatcccttcgccgccgttcgtcgcgggcgtcggggcacccgccgcctcgctccgcacgcgcttcgaccacctcttcccctcgccggcgtccgccctccgctccgccgccgccggcgatccggcctcctcgctgccgccgtacctcctccgccccttcgcgcagaagctccccacggcggcgtcccctttcccgccctacacgtcctcgtcctcgtcgacgccgttgtccacgtcaacgccgtcctcctccaacctcgccgccgccaatgccaatgccaccacgacgagcacggccgcagccaccaccgccacgtccgtcaacccgaccgcggccgccggagccggcgacaccttccagctgacgCccgccgcgctcctccggatgcagcacgatgcgaccagcagcagcggcagctacctctccttccccagcgtcctcgccgccgcgtcgcagcccatgttcggcggcttcgcgcagggcggcggcggcggcgcgcggctgcacgacgcctcgccgtccccgtcgttctcggagttcctcggcggcggcatcagcctcaccgacggcggcggcttgatgtcctccgacgccctgcaccaccacctccccacaagaaacgacgcccaccaccacggcggcgacgagctgtccggcgtcgtcgcgtccggcagctgcaagctcaactacacctcccacgccggcgcaccatcgtcatcacaagccgccgccgccgacaagccgccggatggctccaccgccgccgcgcggcccgcccgaggcgagggcctcgacccatggatctgtacatccgagtag
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| Protein seq | MDSGNSGGSLQSSSGGDDEFDSRGGGGGGGVDSSPLSALLRPSSSSGFSLHGGSMYGFQELGSVGTSLQHQQGVQLQPWSAAQFAAGAPSSSSPRVAADAGVAGAHQQQQQQQQGDPSSEGAGAGAAVAAAPARGSRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPSPPFVAGVGAPAASLRTRFDHLFPSPASALRSAAAGDPASSLPPYLLRPFAQKLPTAASPFPPYTSSSSSTPLSTSTPSSSNLAAANANATTTSTAAATTATSVNPTAAAGAGDTFQLTPAALLRMQHDATSSSGSYLSFPSVLAAASQPMFGGFAQGGGGGARLHDASPSPSFSEFLGGGISLTDGGGLMSSDALHHHLPTRNDAHHHGGDELSGVVASGSCKLNYTSHAGAPSSSQAAAADKPPDGSTAAARPARGEGLDPWICTSE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0008120 | OsCMeo_09g0008120.01 | Chr09 | 12418738 | 12420570 | + | NAM | ||
| CDS seq | atggattctggtaatagtggagggagtctccagtcgtcgagcggcggcgacgacgagttcgattcgcggggaggcggtggtggtggtggggtggactcctcgccgctgtcggcgctgctccgcccctcctcgtcgtcggggttctcgctccacggcggatcgatgtacgggttccaggagctcggctcggtggggacgtcgttgcagcatcagcagggggtgcagctgcagccctggtcggcggcgcagttcgcggcgggggcgccgtcctcgtcgtcgccgcgtgtcgccgccgacgcgggcgtggcgggggcgcaccagcagcagcagcagcagcagcagggtgatccgtcgtcagagggggcgggggcgggggcggcggtggccgcggcgccggcgagggggtcgaggaagcggacgcgggcgtcgcggcgggcgcccacgacggtgctgaccaccgacacctccaacttccgcgccatggtgcaggagttcaccgggatcccttcgccgccgttcgtcgcgggcgtcggggcacccgccgcctcgctccgcacgcgcttcgaccacctcttcccctcgccggcgtccgccctccgctccgccgccgccggcgatccggcctcctcgctgccgccgtacctcctccgccccttcgcgcagaagctccccacggcggcgtcccctttcccgccctacacgtcctcgtcctcgtcgacgccgttgtccacgtcaacgccgtcctcctccaacctcgccgccgccaatgccaatgccaccacgacgagcacggccgcagccaccaccgccacgtccgtcaacccgaccgcggccgccggagccggcgacaccttccagctgacgCccgccgcgctcctccggatgcagcacgatgcgaccagcagcagcggcagctacctctccttccccagcgtcctcgccgccgcgtcgcagcccatgttcggcggcttcgcgcagggcggcggcggcggcgcgcggctgcacgacgcctcgccgtccccgtcgttctcggagttcctcggcggcggcatcagcctcaccgacggcggcggcttgatgtcctccgacgccctgcaccaccacctccccacaagaaacgacgcccaccaccacggcggcgacgagctgtccggcgtcgtcgcgtccggcagctgcaagctcaactacacctcccacgccggcgcaccatcgtcatcacaagccgccgccgccgacaagccgccggatggctccaccgccgccgcgcggcccgcccgaggcgagggcctcgacccatggatctgtacatccgagtag
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| Protein seq | MDSGNSGGSLQSSSGGDDEFDSRGGGGGGGVDSSPLSALLRPSSSSGFSLHGGSMYGFQELGSVGTSLQHQQGVQLQPWSAAQFAAGAPSSSSPRVAADAGVAGAHQQQQQQQQGDPSSEGAGAGAAVAAAPARGSRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPSPPFVAGVGAPAASLRTRFDHLFPSPASALRSAAAGDPASSLPPYLLRPFAQKLPTAASPFPPYTSSSSSTPLSTSTPSSSNLAAANANATTTSTAAATTATSVNPTAAAGAGDTFQLTPAALLRMQHDATSSSGSYLSFPSVLAAASQPMFGGFAQGGGGGARLHDASPSPSFSEFLGGGISLTDGGGLMSSDALHHHLPTRNDAHHHGGDELSGVVASGSCKLNYTSHAGAPSSSQAAAADKPPDGSTAAARPARGEGLDPWICTSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.950481 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0370500 | RBH | 0.360806 | 0.280062 | 0.447557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g20460 | RBH | 0.269185 | 0.183241 | 0.125359 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0370500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007900 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015460 | RBH | 0.0 | 1.297185 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008090 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0211500 | RBH | 0.5622705 | 6.070928 | 0.800982 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008050 | RBH | 0.052527 | 0.0 | 0.066465 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0192100 | RBH | 1.0483505 | 7.1976545 | 1.3548635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007730 | RBH | 0.0 | 1.726152 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007770 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007790 | RBH | 0.0 | 0.956902 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008360 | RBH | 0.085394 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008150 | RBH | 0.0 | 0.0 | 0.0 |
