Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0006240 | OGI:09029920 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:10052259-10059308 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaatgtactcccctaatcttggagtacaacaccacgacaacaatcacaatgtaaggccagaattgcatcagcaaggtggccatgatggcgaacggcagccgccaccacgcccgtgcaatcccgagcctcttgagcagcatcacctcgccggcggccaccacaaagacgaaccacgcgacgtcggccagcgcgagccccgtgatgacgcaggcggcgatggccgtcgtgcgtgccacgggggccagcacgacgtacatcccgaacgcgaacgccacgccgaggctcctcgccgagcacgccatgaacgacgccgagaagacgaaggagatcatgcgggtgcgcatgtcgacggcggccaccccggcgtacgtgaggctgatgacggacagccccgcgcagatgaacgccagcgtgttggcgatgatgaacacgtcgaaggcgtagcggccggccagcctcggcgcgccatcgtcgccgtagtcgcccggcggcgcgaacgccgccgcgaacgccaccgtggcgatcagcaccgagccgacgccgatggtttgggtggattccgtcagcttcttcccttcaacctcctcgtctaccttcttgttgtgttttttgagaaagagatcccatcggtgattaccttgcttggcgttggcatctttcagcaacttgtatatcttgacccgttgattctgccagaaaaaatattggattcaaacgaatcatagcaagtactattacttctgaaatctgatcaaattcaaacaaaattgaagagcaaaagcatatagcttaccaatccgaaataaacaccaactggtttctcgatccaagaaatatcaagcggggtttctcccttattgttcgtcaagttgagctcgacctggcgtctctccatgagagggttgaagatccacatgttgccggccttgacggcgaggtgcagcgccgtgttgccgtcgtcgtcctgcatgttcatcaccgccggcgagaggttcccgagcttgcaggcgtacgcgaccacggactgccgctgctcctcgacggcgacgtggaggaagctccgcccgcggccgtcacggagctcggcgcagcctcttaggtctcgacgcctgcgctcccccgagcacagcccggcgcacttgcggtggttgtcgagcccgagcaggatggagacggccctgacctggccgtcgtaggcggcgacatggatcgggaacgcgccgtcgtggtcaggctggtacgccgccgatgggtcggcatcgagcagcaagctgatgacgtcgtggtgcccccatgacgccgcgacgtggagaggcgtgctccctctgtgccggtcggcttgcttgatgagatccttgttccatcctagtatcattttcgtcgtctctgaaatcgataaatcattgaactcatatcgttctggaaatataacaacatattgttaatcttcaggtctgtttggcactgctcaagctacacctcttctctctcctgaagctggagtcaagtcagctaaacagttttgagtcctactccggtgctttctactcggagtagaaagtaatctaggccctctatcatatttaattgtagagttaagatttagttctactcctaccagaattagtggaagtagaaatgtggaggggtgtttttgtccaggaaaaataattcgtgaaggggtattattgttttccgatccatagatcgatcaccatgtcatcctcgtcggagttggtcgtgcaagatcttaatcgatccatgtaatctatgaaacaacacagtgatcggaaacggcaagaagacgaatgagccgagacgccgccgccaagcaaatgacattgcgtgcgtgcgtgacgctaccgccgaagcccaggtcggagtttttactaccgccagaactcttgctcaagattgtcgctcgctcggacgccaccacactcgtccgctcccagacggacgatgcgactgaggaagcggacaaggcggcgacggcggggaatacggatggcgacggagggggcggacaaggcggcgaggccgggggaggaatagcgaggtgactgcgtgcaacggagttcggacctgatacgatgcgaacagaagaaaacatcccatgccaaaattacccctaaacaatattaggagattacttacctgccctttaaaataaacggtcaagattaattctacttggagtagaatactgcaagtagattgcaccggagcattactcaatagttttagtttcacctaaaatgtgagtgcagttgggtgtagcgctctcacaaaagagtaaagtccatcaccggtccctaaacttgtaccgctgtgtcatcccggtccctaaactcgcaaattgaccgttcaggtcctcaaagttgttcgactgtgtcatctcagtccctaaacttgcatatcactcgtttaggtcctccaacttgttcagttgtgtcaccccggtccctaaacaggacggtctaaaaactttatatcaaaaaataattcataactttttcatgtgaactctaatgaagacaaattttatatcaaaattgtagccctcgacgcgacctacaactttgtagttgaaaattttttgaattaaaactatttagggtcccaaaatattattgcatgtttatagattttgaaattttaattttaaaattacattttgggacaaaaaatgacttacaataaaaaaattcaattacaaagttgtagatcgggtcgagggctacaagtttgatataaagtttgtctttattagagttcacatgaaaatgttatgaattatttttaaatataaagtctttaaaccgttatatttaacccagatgatatttaaatccaagtttagggaccggggtgacacaactgaaaaagttggaggacctaaatgagtgatctgcaaatttagggaccatgatgacacagttgaacaagtttgaggacctaaacggtcgatttgcgagtttagggactgggatgacacaggggtacaagtttagggaccggtgatggactttactcctcacaaaatgaactagagaggtgaagctgtgtttagctaggcagctccataactctactccagacacagctcctagagctaaatttaggagttgaaggtctaccaaacaggcccttataactttgttaccaaaatgctggcaaaggaacactatatgtcggtgttgttccaaacatgtatgacacaggcagactgggaaaccctagccaccgcccgccaccattctcactccccggcccttcttccgtctcgccgctgccacatgaccatgaagaaagttgaaggcagatgggacgaaggtggtgaagaaggaagcgatgaccggaggcagcgatcaaggtggattcaatggatagaggtggagaggcagccagatcagcctcttcgaggccaaatgcaccctcccctcaaatagatttggcaaggggtggtggacaaggtgtgtattgacatcgataccgctggttagcgaagttgttgtggccgagatggtgtcaaaggtggagctgcaggtacgaaggccggtaaggtggtgtcagtgcaggtagctagtataagtgcagttgttgccagtggggttgacgcatggagagaccagacattgggatgaatttagtgcccaaataagcaggatagactgctgaagaggggtaagcgccgatgcagattgttcgccggaaagcggacaatggtgtggatggtgttctctggtcgacggtgagggatcccctccgaccggctggttcttctctcgttgcctagagctcctccccctcttttgtcggatctatttccagactccggtcgcagggagttccattacaaggggtaagatgttggttcgattggatgggttttactttgtggagaatgagtggccattaggctttgaaggttcttatgacaactagttaggcgtttggttttggtggagaggtggtgcataaggctccctcaccacgtccatgagtttgtatgttgaggaggagtcggatctgcttgtttgggtggaaagcttagcaacgataaccctcttctgcttttgtctcggtagtgctgtggtggcttgggacttcatagttggcagggagtgggagcctaacgaaagtcttgcatggtctttgactaatgccgatgatgtcaatgcccgtgggcacagttatccttcatgaaggcatcattgttttcactctcctctattcttcaggtgaaaacctagctagttccattgttcagatagtcattatacgcatcttggacgctattctccatggaagctccgtctataagacccaaaccaatgtttctttggtcgatttggttgttcgtgtaggatcataaaggatctttcccacccaaaagctagccattgaggtgaggggctcccccacttatattagatctcttgcccttccacaactaatgtgggactattcaacaatctctccctttacacattggtatccctcagcccttcaccgccccttcaccgtttccacacggctcctcaggtatacgggccctacaggcacccacggtccatcaggcctttacacactatgtccctcgagccagagatactgaactagccaggctttgataccaattatagaatcgtaaaggatctttcacacctcaaaagctaggcattaaggtgaggggctctcccacttatatattaggccccttgcccttttataaccaatgtgaaactattaaacagttcgtgttgatgtttgttcaaacaaagtcattgctacttttttttaagatccgtaaggatgccttgtgatagtgccgccataagtggttagtttctttgttctccgtgtgagttcttcgctgatttctcccaattaattgtacgttttgatgtttttgggccaggttttctgtcaaaagctaggtcaaatctcttattcaatttcgtatccacttttgaggttaatttacctaactaaatcttgtgtttttgtttcttaaattgcacagcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatactccattcattccaaaatatatggcacaaccacccttaacccaaagaccaagaaataattattatcgtcttgtagtttggattatcctaataagtatattgcatgcatccttattggattagataacatgagagtggaggatttaaaaaagtaataatttaatggagaagatgccatagttagagcaagtataatagtaggctataagccgactaaatgatgacgtgtaggagagaagagaggagagaaaggagaagcgagctgtaaacttacagccggcttaaacaaaaaactaagaaacgctgtgagagagacaagtgggccctgtattaattttaaagagctaactattatacgagtaggctgagagaaagttataaagaaccttataactaacaggtcggctgtattattagccttgcttttaattgcatgcttgcatacatgccttatattataaaatatctaataaaagtggttgtgcactatcatggaatggagggagtatacgttaaacttgcacgatatacaatctgcaacttcactacagatatttactgcaacaattagttttacttctattttattttctaaaataatctataaagcactttttgttcatctatattatgttttcagttttgtattggtattgatgaaaataaaagtatttttaaatatgaagattattccttctgaccttatttttttcataactattaatcaagtttaggatatagctgcctaggaaggtagtccgtcattttgtttcacaacaagaacataagtacccctccatccacaaatataagggattatatgccaattttagcaaaaactaagctaggaaacataatacaaccgaggtgattcttgttgtacttttgccatatttaacaggaatgaagtaaaaagaaagtgacatgttgatggattcaatggacacaagtgaggtgtttgtggaaactatatgaaagggtcaaagtcacttatgtttgtggatgcaagaagtactaataattattaaatatagatctagagttgaaaaaatgactgataaataagaaaaaaaaagaacagttaattacctttgcctttctgaacagcggcgtgcaaggcgttattcccgtccggtccagcgtacgagagccccctgtcgtgctcatgcagcagccgtgcaatgtcgtcgcggcgccccagcgagacggccaggtacaacggcgagccgccgtcggccgccacgacgcgggcgagctcagggtcggcggacatcagcgcctccaccatcgccttgctgcccagacggacggcctcgtggagcgctgtctctcccttgctgttccgcctcctcgcgaacgccctcgccgccgcgtcgcccgcgacgccgccgccgccgcccctcctcgccaggtccaggagatgggagaccatcctgaccatgccggccctggcggcgcagtgcagcggcgtgtcgcccttcccgttgccggcgtcgaggaggtggctggccctggcgtggaccgccgtcgcgctctccaggaacgcgggctcgtcgccgctggacgccaccacgtggaggacggagtccagcgcgacggtgaccgcctccgccgatgttaccaccgcagctgtaggctcggcgtcgtcgtcgtcgtcgacacccacaccgacggtttcaacgtcctcgacatggaggacgacctccccaaccggcaatgccaccggcggcgacaccgtgccaagaagacgtttcagccggtcgcgatcgccgtggcgggcggccatgagcagctcgggacgatgcggcgcctgcaccccatcgttcggctcgctctgcgtcgtcgtcttcttggaatccat
More
|
||||||||||
| CDS seq | atggattccaagaagacgacgacgcagagcgagccgaacgatggggtgcaggcgccgcatcgtcccgagctgctcatggccgcccgccacggcgatcgcgaccggctgaaacgtcttcttggcacggtgtcgccgccggtggcattgccggttggggaggtcgtcctccatgtcgaggacgttgaaaccgtcggtgtgggtgtcgacgacgacgacgacgccgagcctacagctgcggtggtaacatcggcggaggcggtcaccgtcgcgctggactccgtcctccacgtggtggcgtccagcggcgacgagcccgcgttcctggagagcgcgacggcggtccacgccagggccagccacctcctcgacgccggcaacgggaagggcgacacgccgctgcactgcgccgccagggccggcatggtcaggatggtctcccatctcctggacctggcgaggaggggcggcggcggcggcgtcgcgggcgacgcggcggcgagggcgttcgcgaggaggcggaacagcaagggagagacagcgctccacgaggccgtccgtctgggcagcaaggcgatggtggaggcgctgatgtccgccgaccctgagctcgcccgcgtcgtggcggccgacggcggctcgccgttgtacctggccgtctcgctggggcgccgcgacgacattgcacggctgctgcatgagcacgacagggggctctcgtacgctggaccggacgggaataacgccttgcacgccgctgttcagaaaggcaaaggatggaacaaggatctcatcaagcaagccgaccggcacagagggagcacgcctctccacgtcgcggcgtcatgggggcaccacgacgtcatcagcttgctgctcgatgccgacccatcggcggcgtaccagcctgaccacgacggcgcgttcccgatccatgtcgccgcctacgacggccaggtcagggccgtctccatcctgctcgggctcgacaaccaccgcaagtgcgccgggctgtgctcgggggagcgcaggcgtcgagacctaagaggctgcgccgagctccgtgacggccgcgggcggagcttcctccacgtcgccgtcgaggagcagcggcagtccgtggtcgcgtacgcctgcaagctcgggaacctctcgccggcggtgatgaacatgcaggacgacgacggcaacacggcgctgcacctcgccgtcaaggccggcaacatgtggatcttcaaccctctcatggagagacgccaggtcgagctcaacttgacgaacaataagggagaaaccccgcttgatatttcttggatcgagaaaccagttggtgtttatttcggattgaatcaacgggtcaagatatacaagttgctgaaagatgccaacgccaagcaaggtaatcaccgatgggatctctttctcaaaaaacacaacaagaaggtagacgaggaggttgaagggaagaagctgacggaatccacccaaaccatcggcgtcggctcggtgctgatcgccacggtggcgttcgcggcggcgttcgcgccgccgggcgactacggcgacgatggcgcgccgaggctggccggccgctacgccttcgacgtgttcatcatcgccaacacgctggcgttcatctgcgcggggctgtccgtcatcagcctcacgtacgccggggtggccgccgtcgacatgcgcacccgcatgatctccttcgtcttctcggcgtcgttcatggcgtgctcggcgaggagcctcggcgtggcgttcgcgttcgggatgtacgtcgtgctggcccccgtggcacgcacgacggccatcgccgcctgcgtcatcacggggctcgcgctggccgacgtcgcgtggttcgtctttgtggtggccgccggcgaggtgatgctgctcaagaggctcgggattgcacgggcgtggtggcggctgccgttcgccatcatggccaccttgctgatgcaattctggccttacattgtgattgttgtcgtggtgttgtactccaagattaggggagtacattga
More
|
||||||||||
| Protein seq | MDSKKTTTQSEPNDGVQAPHRPELLMAARHGDRDRLKRLLGTVSPPVALPVGEVVLHVEDVETVGVGVDDDDDAEPTAAVVTSAEAVTVALDSVLHVVASSGDEPAFLESATAVHARASHLLDAGNGKGDTPLHCAARAGMVRMVSHLLDLARRGGGGGVAGDAAARAFARRRNSKGETALHEAVRLGSKAMVEALMSADPELARVVAADGGSPLYLAVSLGRRDDIARLLHEHDRGLSYAGPDGNNALHAAVQKGKGWNKDLIKQADRHRGSTPLHVAASWGHHDVISLLLDADPSAAYQPDHDGAFPIHVAAYDGQVRAVSILLGLDNHRKCAGLCSGERRRRDLRGCAELRDGRGRSFLHVAVEEQRQSVVAYACKLGNLSPAVMNMQDDDGNTALHLAVKAGNMWIFNPLMERRQVELNLTNNKGETPLDISWIEKPVGVYFGLNQRVKIYKLLKDANAKQGNHRWDLFLKKHNKKVDEEVEGKKLTESTQTIGVGSVLIATVAFAAAFAPPGDYGDDGAPRLAGRYAFDVFIIANTLAFICAGLSVISLTYAGVAAVDMRTRMISFVFSASFMACSARSLGVAFAFGMYVVLAPVARTTAIAACVITGLALADVAWFVFVVAAGEVMLLKRLGIARAWWRLPFAIMATLLMQFWPYIVIVVVVLYSKIRGVH |
||||||||||
| Function | Ankyrin repeat-containing protein At5g02620 [UniProtKB/Swiss-Prot:Q6AWW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0006240 | OsCMeo_09g0006240.01 | Chr09 | 10052259 | 10059308 | - | NAM | ||
| CDS seq | atggattccaagaagacgacgacgcagagcgagccgaacgatggggtgcaggcgccgcatcgtcccgagctgctcatggccgcccgccacggcgatcgcgaccggctgaaacgtcttcttggcacggtgtcgccgccggtggcattgccggttggggaggtcgtcctccatgtcgaggacgttgaaaccgtcggtgtgggtgtcgacgacgacgacgacgccgagcctacagctgcggtggtaacatcggcggaggcggtcaccgtcgcgctggactccgtcctccacgtggtggcgtccagcggcgacgagcccgcgttcctggagagcgcgacggcggtccacgccagggccagccacctcctcgacgccggcaacgggaagggcgacacgccgctgcactgcgccgccagggccggcatggtcaggatggtctcccatctcctggacctggcgaggaggggcggcggcggcggcgtcgcgggcgacgcggcggcgagggcgttcgcgaggaggcggaacagcaagggagagacagcgctccacgaggccgtccgtctgggcagcaaggcgatggtggaggcgctgatgtccgccgaccctgagctcgcccgcgtcgtggcggccgacggcggctcgccgttgtacctggccgtctcgctggggcgccgcgacgacattgcacggctgctgcatgagcacgacagggggctctcgtacgctggaccggacgggaataacgccttgcacgccgctgttcagaaaggcaaaggatggaacaaggatctcatcaagcaagccgaccggcacagagggagcacgcctctccacgtcgcggcgtcatgggggcaccacgacgtcatcagcttgctgctcgatgccgacccatcggcggcgtaccagcctgaccacgacggcgcgttcccgatccatgtcgccgcctacgacggccaggtcagggccgtctccatcctgctcgggctcgacaaccaccgcaagtgcgccgggctgtgctcgggggagcgcaggcgtcgagacctaagaggctgcgccgagctccgtgacggccgcgggcggagcttcctccacgtcgccgtcgaggagcagcggcagtccgtggtcgcgtacgcctgcaagctcgggaacctctcgccggcggtgatgaacatgcaggacgacgacggcaacacggcgctgcacctcgccgtcaaggccggcaacatgtggatcttcaaccctctcatggagagacgccaggtcgagctcaacttgacgaacaataagggagaaaccccgcttgatatttcttggatcgagaaaccagttggtgtttatttcggattgaatcaacgggtcaagatatacaagttgctgaaagatgccaacgccaagcaaggtaatcaccgatgggatctctttctcaaaaaacacaacaagaaggtagacgaggaggttgaagggaagaagctgacggaatccacccaaaccatcggcgtcggctcggtgctgatcgccacggtggcgttcgcggcggcgttcgcgccgccgggcgactacggcgacgatggcgcgccgaggctggccggccgctacgccttcgacgtgttcatcatcgccaacacgctggcgttcatctgcgcggggctgtccgtcatcagcctcacgtacgccggggtggccgccgtcgacatgcgcacccgcatgatctccttcgtcttctcggcgtcgttcatggcgtgctcggcgaggagcctcggcgtggcgttcgcgttcgggatgtacgtcgtgctggcccccgtggcacgcacgacggccatcgccgcctgcgtcatcacggggctcgcgctggccgacgtcgcgtggttcgtctttgtggtggccgccggcgaggtgatgctgctcaagaggctcgggattgcacgggcgtggtggcggctgccgttcgccatcatggccaccttgctgatgcaattctggccttacattgtgattgttgtcgtggtgttgtactccaagattaggggagtacattga
More
|
|||||||
| Protein seq | MDSKKTTTQSEPNDGVQAPHRPELLMAARHGDRDRLKRLLGTVSPPVALPVGEVVLHVEDVETVGVGVDDDDDAEPTAAVVTSAEAVTVALDSVLHVVASSGDEPAFLESATAVHARASHLLDAGNGKGDTPLHCAARAGMVRMVSHLLDLARRGGGGGVAGDAAARAFARRRNSKGETALHEAVRLGSKAMVEALMSADPELARVVAADGGSPLYLAVSLGRRDDIARLLHEHDRGLSYAGPDGNNALHAAVQKGKGWNKDLIKQADRHRGSTPLHVAASWGHHDVISLLLDADPSAAYQPDHDGAFPIHVAAYDGQVRAVSILLGLDNHRKCAGLCSGERRRRDLRGCAELRDGRGRSFLHVAVEEQRQSVVAYACKLGNLSPAVMNMQDDDGNTALHLAVKAGNMWIFNPLMERRQVELNLTNNKGETPLDISWIEKPVGVYFGLNQRVKIYKLLKDANAKQGNHRWDLFLKKHNKKVDEEVEGKKLTESTQTIGVGSVLIATVAFAAAFAPPGDYGDDGAPRLAGRYAFDVFIIANTLAFICAGLSVISLTYAGVAAVDMRTRMISFVFSASFMACSARSLGVAFAFGMYVVLAPVARTTAIAACVITGLALADVAWFVFVVAAGEVMLLKRLGIARAWWRLPFAIMATLLMQFWPYIVIVVVVLYSKIRGVH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0331600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0331600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005970 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006190 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0177600 | RBH | 0.025696 | 0.1206405 | 0.004759 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006370 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0152600 | RBH | 0.088164 | 0.094729 | 0.002221 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006320 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006180 | RBH | 0.0 | 0.0 | 0.0 |
