Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0004180 | OGI:09020080 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:6476366-6477954 | ||||||||
| Gene Symbol | SUB1B, Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166 | ||||||||||
| DNA seq | agtctcaacataacaatttttgttgtacaaaagcaatataaagatatttacattcattaacaaagcacacaacatcatacatatgtacatccttatgtagcattgggaagtctgaaatggacatgaaaggatacaacagaacaacgagcaaacttgctaacactacagtagtagtgcagagacatgcatattttattcttgcactccaagttaatttgctcctagctagtagtaactacttctcttgtacttcacatgtaccgatctaatcaggcgtgcgcgctgctaattaaccattccctgttaagatgaagaagagaaaataaggagaagctagattagacaattggaaactactagtattaagcactgcatagcatggaatttagtaagtattctggtgtatatacatgcatggttttttcagaaatttccgacaaaaaataagtttgtaaatttagttaggctaaggagttaccgctgcgttacttctttttaagcatgtgttagagataacttttacgggtatatgtgagggtgagagataacttttacgggtatatgtgagggtgaagttattatattttccgtgtaaaagaaaaatatctttagtttgatttatcggatatggatatttcggctcaaaaacttgcagttgtcccggtcaatcctcaaagacacaaacaggtcacttttcatccatgaacagtttgtgtcaatggattggtatgataaaaaacttgagatatcgatcatttgacgaaaaattggagaaaccataccaaaacactgcgtggttcgctggacacgtcgaagccggcgaggaggctgtccatcacgtcgtcggagcagcactccagcagtatgagctcatcgcctcgctcgccggacgccaccgtcgacgacgtcgtgcaagcggaggctctgtccggcgccgacgacgacgccgggctgtttccacgggccacgccgtcgtcgagcaggaagcagaacggcgcctgcgatggcgccggcagcggaggctcgtcgggcgggaagttggtccttgccttgtggccgtggatgcggcgcgcctcggcgtcgtaggcgcgcgcggcctcgacggcggtgtcgaaggtgccgagccagacgcgggcgcccttgacggggtcgcggatctccgacgcccaccgcccccacggccgctgccggacgccgcggtacgggtagctccgcctcacccttcgccgccgccgcggcctctccaccaccgccgccgccggcgccacctctgtggtcgtctccatcgtccctgcaccagaagggaacatggaaacgccgccgtcgtcgtcgtcgtcgtcgccagcgatgaactcccggaaggcggcctcccagtcgtcgtcgccgccgccgccacgcttcttcttcttcttcatcttcgttgtggcgtcccactccgacgactccgacggcggcggcggcggcttgtcgccgtagtcgttcgggatcagtgctcctccacacatcgtgatattcttatgatgtttttgtctgatctgattcaagtagtttgagttatccttgcaagttattgaaggtgtgtgtctgaa
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| CDS seq | atgtgtggaggagcactgatcccgaacgactacggcgacaagccgccgccgccgccgtcggagtcgtcggagtgggacgccacaacgaagatgaagaagaagaagaagcgtggcggcggcggcgacgacgactgggaggccgccttccgggagttcatcgctggcgacgacgacgacgacgacggcggcgtttccatgttcccttctggtgcagggacgatggagacgaccacagaggtggcgccggcggcggcggtggtggagaggccgcggcggcggcgaagggtgaggcggagctacccgtaccgcggcgtccggcagcggccgtgggggcggtgggcgtcggagatccgcgaccccgtcaagggcgcccgcgtctggctcggcaccttcgacaccgccgtcgaggccgcgcgcgcctacgacgccgaggcgcgccgcatccacggccacaaggcaaggaccaacttcccgcccgacgagcctccgctgccggcgccatcgcaggcgccgttctgcttcctgctcgacgacggcgtggcccgtggaaacagcccggcgtcgtcgtcggcgccggacagagcctccgcttgcacgacgtcgtcgacggtggcgtccggcgagcgaggcgatgagctcatactgctggagtgctgctccgacgacgtgatggacagcctcctcgccggcttcgacgtgtccagcgaaccacgcagtgttttgggaatggttaattag
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| Protein seq | MCGGALIPNDYGDKPPPPPSESSEWDATTKMKKKKKRGGGGDDDWEAAFREFIAGDDDDDDGGVSMFPSGAGTMETTTEVAPAAAVVERPRRRRRVRRSYPYRGVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTNFPPDEPPLPAPSQAPFCFLLDDGVARGNSPASSSAPDRASACTTSSTVASGERGDELILLECCSDDVMDSLLAGFDVSSEPRSVLGMVN |
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| Function | Ethylene-responsive transcription factor 1 [UniProtKB/Swiss-Prot:Q6K7E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0004180 | OsCMeo_09g0004180.01 | Chr09 | 6476403 | 6477954 | - | NAM | ||
| CDS seq | atgtgtggaggagcactgatcccgaacgactacggcgacaagccgccgccgccgccgtcggagtcgtcggagtgggacgccacaacgaagatgaagaagaagaagaagcgtggcggcggcggcgacgacgactgggaggccgccttccgggagttcatcgctggcgacgacgacgacgacgacggcggcgtttccatgttcccttctggtgcagggacgatggagacgaccacagaggtggcgccggcggcggcggtggtggagaggccgcggcggcggcgaagggtgaggcggagctacccgtaccgcggcgtccggcagcggccgtgggggcggtgggcgtcggagatccgcgaccccgtcaagggcgcccgcgtctggctcggcaccttcgacaccgccgtcgaggccgcgcgcgcctacgacgccgaggcgcgccgcatccacggccacaaggcaaggaccaacttcccgcccgacgagcctccgctgccggcgccatcgcaggcgccgttctgcttcctgctcgacgacggcgtggcccgtggaaacagcccggcgtcgtcgtcggcgccggacagagcctccgcttgcacgacgtcgtcgacggtggcgtccggcgagcgaggcgatgagctcatactgctggagtgctgctccgacgacgtgatggacagcctcctcgccggcttcgacgtgtccagcgaaccacgcagtgttttgggaatggttaattag
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| Protein seq | MCGGALIPNDYGDKPPPPPSESSEWDATTKMKKKKKRGGGGDDDWEAAFREFIAGDDDDDDGGVSMFPSGAGTMETTTEVAPAAAVVERPRRRRRVRRSYPYRGVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTNFPPDEPPLPAPSQAPFCFLLDDGVARGNSPASSSAPDRASACTTSSTVASGERGDELILLECCSDDVMDSLLAGFDVSSEPRSVLGMVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0004180 | OsCMeo_09g0004180.02 | Chr09 | 6476366 | 6477954 | - | IsoSeq | ||
| CDS seq | atggtttctccaatttttcgtcaaatgatcgatatctcaagttttttatcataccaatccattgacacaaactgttcatggatgaaaagtgacctgtttgtgtctttgaggattgaccgggacaactgcaagtttttgagccgaaatatccatatc |
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| Protein seq | MVSPIFRQMIDISSFLSYQSIDTNCSWMKSDLFVSLRIDRDNCKFLSRNIHI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 18.190815 | 5.593654 | 3.406087 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0287000 | RBH | 1.213000 | 0.674779 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11480 | RBH | 1.169618 | 0.750602 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0287000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004110 | RBH | 5.601885 | 11.461939 | 1.628260 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004150 | RBH | 0.119023 | 0.000000 | 2.010732 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004170 | RBH | 2.261825 | 3.553356 | 9.693797 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004060 | RBH | 0.848626 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004210 | RBH | 30.544586 | 5.662037 | 10.554608 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0112900 | RBH | 25.811258 | 90.0488965 | 0.957688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004220 | RBH | 0.609409 | 0.391859 | 0.080186 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0106800 | RBH | 34.293134 | 201.4484555 | 0.1404995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004180 | RBH | 0.076284 | 0.111516 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004170 | RBH | 3.616984 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004190 | RBH | 8.644479 | 12.943077 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004090 | RBH | 3.990930 | 0.0 | 0.471110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004130 | RBH | 2.476621 | 14.198987 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004280 | RBH | 4.140940 | 0.805892 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004170 | RBH | 18.466000 | 46.336170 | 1.362700 |
