Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0003160 | OGI:09015380 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:5169054-5171060 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatcgtccacctgagaggccagagaatgtgccgatgctcgtcctcaactccggatatgacatggctgatgggttaaatcctttgttttgcatcaaaggtagcttgctgaaacctagacgtgttggtgctaactctggctgtggcaagtccttgtcgaggtattgcattacctgccgcatatttggccttgaagcaggaaatggatgcaaacacacaagagctaattttaggactaggaatgcctcgtcaatgttataatcaccttggagtctcatgtccactgcctcagtgagagatccatcatgccaatgctcaagaacccaatcaaccagcataagttggttgccttgagagtcttgtttcactggcctttgtccacaagtggtctcaagaaggaatgcgccaaaagcaaacacatctgtgagaggggatgccttacctgtctgtaccatctcaggtgctaggtagcccatggtgccaaccacatgtgtagtctgtgggtcagtaccatgatcatatagtcgtgcaagcccaaagtcgcctaatctcccattcatttcagcatcaaggagtatattgcttgcctttatgtctcgatgtataacaactttctcccatctctcgtgcaaatagaacaatccacatgcaacatctttaattatctgaaatctttgagcccaattaagtatagccctattatctacatcatgtagatacttatcaagactaccttttggcatgtagttatagaccaaaagtagttcactcttccgtcgacagtagccaagtagtggcacaaggttgcgatgtcgaagacgaccaatgctaacaatctctgttataaactccttcattccttgtctcgactcatgggagatcttcttcacggcaatctccaatttggatgtcgcaaggactcctttatagactttcccaaatccacctactccaatcaagtttttgttcttaaatccttgagtggcatggaacaggtccttgtatgaaaaccgctgaggcccaaaatcaatctcccaatcttctcgcagctcagcatacagtagcttcctccgcacaatcaaaatgaccatggtgccgacaatgatgatgaacatggcactggctattgggaggacgatttccaagacattggaacgaggcttggttccaacacgaggtagctttggtagtttggtgatatcaatgtccggagctggaacacccatgccaaagctccagccaagcacgatatgtcgtgtgctaattgggccagttgcagctgaaaaacctatgtacatagggtctgtgagcacagtcgagagatcataggtggcatagagcagtggcctccacggctttggtgtatcaatgggagccatggtcacggtgatctgtgtggcctcttcgctgtattccatccaaacttgcatagcccgaccattgtacagagtcaagtttgtgaaaatcccgttcttgtcaccatagaagccagcaaaggaggaattcacggagcggacatcattgatatcaatgccaacatggctgttactgatatccccaaactcattgttctgaaaggtgtcaagctcgactgcgaagatgcggttacttgaattccctctgttgctgatgttaaagagacccaggtacccatctggccacgcagtcgagagattgttgcttggggctaccaagaacgccatgccatcgtagcttctgtcggagtagaaggactggatggcgaacacgaagttgaccgagaatgactgaacggtgctgttgggtgaactgcggaaatgcataggtgttgggaagaatgcatggccattgagatcattcttgtcactagtcagctcaaggagtccttccggtgtgattttggtggtgccatcgatagtgaggtttttgccggtgaaaccatggtagatgaattggttttgactggcacaaagggttacaagggtgaagccaagcgacacaaggagcagaaagaagggaggatgctccat
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| CDS seq | atggagcatcctcccttctttctgctccttgtgtcgcttggcttcacccttgtaaccctttgtgccagtcaaaaccaattcatctaccatggtttcaccggcaaaaacctcactatcgatggcaccaccaaaatcacaccggaaggactccttgagctgactagtgacaagaatgatctcaatggccatgcattcttcccaacacctatgcatttccgcagttcacccaacagcaccgttcagtcattctcggtcaacttcgtgttcgccatccagtccttctactccgacagaagctacgatggcatggcgttcttggtagccccaagcaacaatctctcgactgcgtggccagatgggtacctgggtctctttaacatcagcaacagagggaattcaagtaaccgcatcttcgcagtcgagcttgacacctttcagaacaatgagtttggggatatcagtaacagccatgttggcattgatatcaatgatgtccgctccgtgaattcctcctttgctggcttctatggtgacaagaacgggattttcacaaacttgactctgtacaatggtcgggctatgcaagtttggatggaatacagcgaagaggccacacagatcaccgtgaccatggctcccattgatacaccaaagccgtggaggccactgctctatgccacctatgatctctcgactgtgctcacagaccctatgtacataggtttttcagctgcaactggcccaattagcacacgacatatcgtgcttggctggagctttggcatgggtgttccagctccggacattgatatcaccaaactaccaaagctacctcgtgttggaaccaagcctcgttccaatgtcttggaaatcgtcctcccaatagccagtgccatgttcatcatcattgtcggcaccatggtcattttgattgtgcggaggaagctactgtatgctgagctgcgagaagattgggagattgattttgggcctcagcggttttcatacaaggacctgttccatgccactcaaggatttaagaacaaaaacttgattggagtaggtggatttgggaaagtctataaaggagtccttgcgacatccaaattggagattgccgtgaagaagatctcccatgagtcgagacaaggaatgaaggagtttataacagagattgttagcattggtcgtcttcgacatcgcaaccttgtgccactacttggctactgtcgacggaagagtgaactacttttggtctataactacatgccaaaaggtagtcttgataagtatctacatgatgtagataatagggctatacttaattgggctcaaagatttcagataattaaagatgttgcatgtggattgttctatttgcacgagagatgggagaaagttgttatacatcgagacataaaggcaagcaatatactccttgatgctgaaatgaatgggagattaggcgactttgggcttgcacgactatatgatcatggtactgacccacagactacacatgtggttggcaccatgggctacctagcacctgagatggtacagacaggtaaggcatcccctctcacagatgtgtttgcttttggcgcattccttcttgagaccacttgtggacaaaggccagtgaaacaagactctcaaggcaaccaacttatgctggttgattgggttcttgagcattggcatgatggatctctcactgaggcagtggacatgagactccaaggtgattataacattgacgaggcattcctagtcctaaaattagctcttgtgtgtttgcatccatttcctgcttcaaggccaaatatgcggcaggtaatgcaatacctcgacaaggacttgccacagccagagttagcaccaacacgtctaggtttcagcaagctacctttgatgcaaaacaaaggatttaacccatcagccatgtcatatccggagttgaggacgagcatcggcacattctctggcctctcaggtggacgatga
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| Protein seq | MEHPPFFLLLVSLGFTLVTLCASQNQFIYHGFTGKNLTIDGTTKITPEGLLELTSDKNDLNGHAFFPTPMHFRSSPNSTVQSFSVNFVFAIQSFYSDRSYDGMAFLVAPSNNLSTAWPDGYLGLFNISNRGNSSNRIFAVELDTFQNNEFGDISNSHVGIDINDVRSVNSSFAGFYGDKNGIFTNLTLYNGRAMQVWMEYSEEATQITVTMAPIDTPKPWRPLLYATYDLSTVLTDPMYIGFSAATGPISTRHIVLGWSFGMGVPAPDIDITKLPKLPRVGTKPRSNVLEIVLPIASAMFIIIVGTMVILIVRRKLLYAELREDWEIDFGPQRFSYKDLFHATQGFKNKNLIGVGGFGKVYKGVLATSKLEIAVKKISHESRQGMKEFITEIVSIGRLRHRNLVPLLGYCRRKSELLLVYNYMPKGSLDKYLHDVDNRAILNWAQRFQIIKDVACGLFYLHERWEKVVIHRDIKASNILLDAEMNGRLGDFGLARLYDHGTDPQTTHVVGTMGYLAPEMVQTGKASPLTDVFAFGAFLLETTCGQRPVKQDSQGNQLMLVDWVLEHWHDGSLTEAVDMRLQGDYNIDEAFLVLKLALVCLHPFPASRPNMRQVMQYLDKDLPQPELAPTRLGFSKLPLMQNKGFNPSAMSYPELRTSIGTFSGLSGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0003160 | OsCMeo_09g0003160.01 | Chr09 | 5169054 | 5171060 | - | NAM | ||
| CDS seq | atggagcatcctcccttctttctgctccttgtgtcgcttggcttcacccttgtaaccctttgtgccagtcaaaaccaattcatctaccatggtttcaccggcaaaaacctcactatcgatggcaccaccaaaatcacaccggaaggactccttgagctgactagtgacaagaatgatctcaatggccatgcattcttcccaacacctatgcatttccgcagttcacccaacagcaccgttcagtcattctcggtcaacttcgtgttcgccatccagtccttctactccgacagaagctacgatggcatggcgttcttggtagccccaagcaacaatctctcgactgcgtggccagatgggtacctgggtctctttaacatcagcaacagagggaattcaagtaaccgcatcttcgcagtcgagcttgacacctttcagaacaatgagtttggggatatcagtaacagccatgttggcattgatatcaatgatgtccgctccgtgaattcctcctttgctggcttctatggtgacaagaacgggattttcacaaacttgactctgtacaatggtcgggctatgcaagtttggatggaatacagcgaagaggccacacagatcaccgtgaccatggctcccattgatacaccaaagccgtggaggccactgctctatgccacctatgatctctcgactgtgctcacagaccctatgtacataggtttttcagctgcaactggcccaattagcacacgacatatcgtgcttggctggagctttggcatgggtgttccagctccggacattgatatcaccaaactaccaaagctacctcgtgttggaaccaagcctcgttccaatgtcttggaaatcgtcctcccaatagccagtgccatgttcatcatcattgtcggcaccatggtcattttgattgtgcggaggaagctactgtatgctgagctgcgagaagattgggagattgattttgggcctcagcggttttcatacaaggacctgttccatgccactcaaggatttaagaacaaaaacttgattggagtaggtggatttgggaaagtctataaaggagtccttgcgacatccaaattggagattgccgtgaagaagatctcccatgagtcgagacaaggaatgaaggagtttataacagagattgttagcattggtcgtcttcgacatcgcaaccttgtgccactacttggctactgtcgacggaagagtgaactacttttggtctataactacatgccaaaaggtagtcttgataagtatctacatgatgtagataatagggctatacttaattgggctcaaagatttcagataattaaagatgttgcatgtggattgttctatttgcacgagagatgggagaaagttgttatacatcgagacataaaggcaagcaatatactccttgatgctgaaatgaatgggagattaggcgactttgggcttgcacgactatatgatcatggtactgacccacagactacacatgtggttggcaccatgggctacctagcacctgagatggtacagacaggtaaggcatcccctctcacagatgtgtttgcttttggcgcattccttcttgagaccacttgtggacaaaggccagtgaaacaagactctcaaggcaaccaacttatgctggttgattgggttcttgagcattggcatgatggatctctcactgaggcagtggacatgagactccaaggtgattataacattgacgaggcattcctagtcctaaaattagctcttgtgtgtttgcatccatttcctgcttcaaggccaaatatgcggcaggtaatgcaatacctcgacaaggacttgccacagccagagttagcaccaacacgtctaggtttcagcaagctacctttgatgcaaaacaaaggatttaacccatcagccatgtcatatccggagttgaggacgagcatcggcacattctctggcctctcaggtggacgatga
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| Protein seq | MEHPPFFLLLVSLGFTLVTLCASQNQFIYHGFTGKNLTIDGTTKITPEGLLELTSDKNDLNGHAFFPTPMHFRSSPNSTVQSFSVNFVFAIQSFYSDRSYDGMAFLVAPSNNLSTAWPDGYLGLFNISNRGNSSNRIFAVELDTFQNNEFGDISNSHVGIDINDVRSVNSSFAGFYGDKNGIFTNLTLYNGRAMQVWMEYSEEATQITVTMAPIDTPKPWRPLLYATYDLSTVLTDPMYIGFSAATGPISTRHIVLGWSFGMGVPAPDIDITKLPKLPRVGTKPRSNVLEIVLPIASAMFIIIVGTMVILIVRRKLLYAELREDWEIDFGPQRFSYKDLFHATQGFKNKNLIGVGGFGKVYKGVLATSKLEIAVKKISHESRQGMKEFITEIVSIGRLRHRNLVPLLGYCRRKSELLLVYNYMPKGSLDKYLHDVDNRAILNWAQRFQIIKDVACGLFYLHERWEKVVIHRDIKASNILLDAEMNGRLGDFGLARLYDHGTDPQTTHVVGTMGYLAPEMVQTGKASPLTDVFAFGAFLLETTCGQRPVKQDSQGNQLMLVDWVLEHWHDGSLTEAVDMRLQGDYNIDEAFLVLKLALVCLHPFPASRPNMRQVMQYLDKDLPQPELAPTRLGFSKLPLMQNKGFNPSAMSYPELRTSIGTFSGLSGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.209838 | 0.0 | 0.329893 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0268000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g09500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0268000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003120 | RBH | 0.0 | 0.0 | 0.631996 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003120 | RBH | 0.0 | 0.0 | 0.317929 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003180 | RBH | 0.745062 | 0.757493 | 0.585667 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0003000 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003200 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0083700 | RBH | 0.971361 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003100 | RBH | 0.048209 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0087000 | RBH | 0.120824 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003130 | RBH | 0.041278 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003150 | RBH | 0.090882 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003070 | RBH | 0.221516 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003160 | RBH | 0.058827 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003300 | RBH | 0.343673 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003190 | RBH | 0.0 | 0.0 | 0.0 |
