Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0001860 | OGI:09009340 | 2/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:3279620-3285137 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGGGATCACGCTTTCCATCCGTATCGCCCTCCCCGTCCGCATCGCCCTCCTCTCCAGATCCCCTTCCTCTCTCTCGATCGCCGCCGCCTCCTCGATTCTCAGCGCGCGACGCAATCTATCCCCCCGGCTCCCGCGCTTCTCCCCTCCCTCCCGCGCGGTTCCCGCGCTTCTCCTCTCCCTCTCCCGCTCGCGAAATTGCCTACCTATATGACAGAGAAATCCAGTTGCTCCAAAATTCCCCATCGCCATATTCCGCCGCTTCCGATCTCCCTCTTCCGCCGGCCACCGAATCGACAGCCACCTCGACCACAGACCCGCTCCTCTTCCACCTTGTATAATCTCTCCCGCCCCCGCAAGAAATTCCTGCCTAAAACCCTAGTTCCCCACCACCAACACCATGTCTCGTCGGAGGAAGAGGGAGGTAGCGCCGCCTCCTCAGGCCGTCGTGAGCTCTACTGCTCCATTCGCTGTTCCTACGTCGCAGGCAGCGCCATATCCATATGGGGGTCTCGGGTTCCCGCCGCCACCGACAGCTTGGCTTGCTTCTCCACAGCCACAAGCCATGCCTGGCTCTTCTGCTTTCCATCCTCCTGCGGCCGGCAAGACTGATGTGCATCCTGATCTTGAAGAATGGTATGTCTGTCAATTGGCTTTGTTAGTTCTGAATTTGCCATGCTGATTACTCCTTTTAGTGCTAAATAAAAAAAAAGAGCATGTACTGATTTACTTATTTAAGTGATGTTTCTTTGAAAAACAAAGTTACAAAGCATGCACTGAATTCTATTTAGGCTAATAAGATTTGATATCCATTTGTGACTGAAATCTGAAACAATTTGATTGTGGTTATTGCACTGAAATTTTACAGATATTGTTTGCATTTAAAAATTGTTGACATAAGTGACCACAAGCTATAAGTTTCGGTGGGATCATAATAAAAACCTGAAACAATTTGATTCGATTTTCTTGCACCTAAACACATGCAACCCATCATTCCAAATTTAAGCACACAATGTTCAGAATTATATTTCTAATCAGCATGGCCAGTGGCGAATTCACCTCCCGTGCAGCTGCCCGGGCTTCACAGCGACGATCCTTCGCTAAAATAGATTAATTCCCGGGCAGTGTGTATGCTAGTTAGAGGTAATAACGGCAAGCATGTAGGCTGCAACCGACACTTGGGTTAGGCCTCGGCTGCCTATGGCATGCATGCCTCACAAGTACTAGCCTCAATGCGTCACACGGACATGTACAGAAGCATTGAACAACTTGCTAAGTTTTAATTCTAATACCAGTTCCTTGAATGAATAGACTAACTTATTGTTGCTAGAGTTTCAGGCATAATGTAATATTTAGATGATATATATGAGATAAGTCTTAAAATAACAGAGTTACATATAAGATAAGTCTTAAAATATCACAATGTTAATTTTTATGGCTTTATACAAAAAAAATGAACATATTTAAATATTGTAGCAGTTTATTTGTTAGCTAGCCTTGCCCAGGCAGTTTATTCAGTTGAACTGGTCCCCAACAAAATAAATTGGCTGTCTTTTTAATAAAAACCCAATAGATTAGTGGGCTTCTGCTATACCTTGTTTGCACCAATGTAGTATAGGCTCGTCTGTTAGCCCTTTGTACTGGATGAGTGCATGTTTATTTTAGTAGTGTATAGAACTCCATTTACAAACTGAATGGCCATTTTCTTGTTAAAATATTATATTATTCGGACACAACTTGAACAAGATTTGCATGTTCATGTGTTCTATACGGGGGGTTGAATCTCGTCCGCCCGGCGGTTTCGTTAATTTTATCAATACCCCATCAAACCATGTCCATCATGTGGCCGAAGGGAGTCCATCACAGCCCATCAATGTTGTGAATGGACATGTCGCTAGGACTGATAAGCGCTTGTCATGGATGAAGGATGAAGACTTGAGATTGGTAAGTGGCTTATGTCAGCTATTTATTTGTTAATGGCATGCATGTCACTTGCATTACTGGCAATAATAAATTTCTTTTTCCTGAAATTGTAGATCAGTGCTTGGCTGAACAACTCAAATGATCCTATAGAATCGAATTTCAAGAAGAATGATAAATATTGGGGCGATGTAGCTGCAGCTTACAACAGCACTACACCAAAAAACCGAGCTAGACTAGTTAAGCAAGTTAAGGATCGTTTTGGTAAAATTAGGAAGAAGGTCGGGAATTTTTGTTGCTCTTGGAAGGAGGTTAATTCATTATATGCTAGTGGGGAGTCTAATGAAGATCTGATGAACAAGGCACAGAAAATATATGAGAATGACTTCAAGGATGGTCCATTCTTGTTTATGCACTGTTGGAATGAACTAAAAAAACAACCAAAGTGGCATGCATATTTGGAGCAGCTTGACAAGTCAAACAAAAGGAAGGCAGATTACAATGATGTTATCCCCCTTGATGATGAAGAAGATATACCACGACCAATAGGAGCCAAGGCATCTAAGGCGCAACGTAGTTGCAAAGAAAAGAGCAAGGTCCAAGTTTGTACAACTGAGCTTGAGGATGACATCCGTAAGTTTATGGATGCGCATGCAGCAACCAAGGAAGGGCAAAATGAAGTGTTAGAGACCCAAATACGGGTTTCTATTGACAACCATGCAGCCAAAAAGCTTAGTCGCCAGACAGCTATGATTGAAACCTATCGAGACTTAATGAACAAAGACACAAGGAAGATGCCTGACGATATGAGATCTGAGCTTGTTCACATGCTGAAATGCATGAGAGAAGAGATATTCAACAAAAATCAGTGAGGTATGAATCTCTGTTCTAAAATGTAGTTAGATGAAATTAATTTGAAGCCTTCAAAAAAAAACATGTAATCAGCCCAAAAATCAATGCAAGTTAGTACAAACACACATGCAGGTAGTTCCCTCTTTCATGCTTATTAATTGCAGTTTGTCCAAAAAAAAAGAACTTTCTCCAAGTTCCCATACTGATTGCTTATTCATTGCAGCTAGTCAAAAAGTTATGTAGTCAGTCCAAAATTTTGCACTTGGTCCAAATTATGATGCAGTCAACTCAAATATTCATTGCTAGTAGTCTCTTATGGTGAAATTAGCATGCAAAAGTTGTTTGCATTTAAAGTGGACCTTTGTCCAAATTCCCATGTTGACTACTTATTAATTGCAGCTACTCAAAAAATCATGTAATCAGTCCAAAATTTTGCACTTGGTCCAAATTATAATGCAGTCAACTCAAATATTCATTGCTAGCATTCTCTTATGCTGAAATTAGCATGCAAACTACTACAACCTGTCAATCTCTATCTATATATTGACTCTCCCATTCTGGAATTCCCAAACCATTCCATCCTTTTCTAGAACCACCATGTCAGATTCATCCTCAAACTCAAACTCATCCTCCTACTCAAATGACCTAGACCCATCCAAATTTCTTGACAAGTACATTTCTGATCAAAATGTCCTAGACTCCTTTGCTACTCGCATCGTAGAGAAGATCAAGACCAAGTTTGCAGCTGGGCTACTCAAGCGCTAAAGTGGAACTAGGAAGACCATTGCAAGGGATCATGAAGAAGGTCACCGACGTCTAGTGGCTGATTACTTTGCAAATCAGCCACTCTACCCTGAGAGAATGTTTCGCACAAGATTTCGTATGCGAAAGCATCTCTTTTTACGTATCGTGCAAGCCTTAGGTCAATGGTCTCCATACTTTACTCAAAGAGAAGATTGTTCTGGTCGCACTGGCCTTTCTCCACTTCAGAAGTGCACAGCAGCGATCCGTATGTTAGCATATGGCACTCCTGCTGATGCTTTAGATGAATACTTGCTAATTGGCAAAAGCACTTCCTTAGAGTGCTTGGACACTTTTGCACGAGGGGTAGTTGAGGTCTTTGGTGGGCAATACTTGCGACGGCCCACAAGTGAGGATATAGATCATATACTACAAGTTAATGAATCTCGTGGCTTTCCGGGTATGTTAGGAAGTATTGATTGCATGCACTGGAGGTGGGAGAGTTGTCCGAGAGCTTGGAGGGGACAATTCACCCGTGGTGACTATAAAGTCCTAACAATTATCCTTGAAGCGGTTGCGTCATATGACCTTTGGATTTGGCATGCTTTCTTTGGTGTCGCTGGTTCTAACAACGATATAAATGTGCTGAATCAGTCCCCTTTATTCCTTGAACAAGTGAGAGGGGAGGCTCCTCGGGTTCATTTTTCTGTAAATGGGAATGAGTACAACAATGGGTACTACCTTGCTGATGGTATATACCCAGAATGGGCCAGCTTCATGAAGACGATATCACTTCCACAAATAGAGAAGCATAAATTGTTTGCTGAACGTCAAGAAGGTGCAAGGAAAGATGTGGAGCAGGCTTTTGGGGTATTGCAAGCCCGTTTCAACATTGTACGCCGTCCAGCAAAGAAGTGGAAGCGAAAGAGTGTTGGGAAAATCATGCTAGCTTGTGTGATTCTCCATAATATGATTGTTGAAGACGAGAGAGAGGATGCAATATGTGACATTGACCTCAATAGAATTCCTAGGACATCAATAGTTCTGCCTCCTGAAGTAACTTGTGATGATAACCCATGTTTTTCTGATGTGCTACGTAGGAGATCTGCTATTCGTGCTCGTTCAGTCCATACCCAGCTGAAAAATGATTTAATTGAGCATATTTGGAATCGGTTTGGAAATAGGCAGTCAACATAAACATGGTAGGGTAATAAGCATGTGGTTTTTGCCTTCTTTTTTTGTCATATATAGATCATCAATTAATCCTTGTGTAATATATTTCAGGAAGATGTTCTCTTGTCCAATTCATGGTGCTGAACTTCTTACAGGTAACTTGTATGAACTAAATTTACTCCTAGGCCAGACTACTTACAACCATAGTTTAGTGATTCTCTCTTCTTATTTGGGATGCAGTAGCATGGCATTCTCTTAATGCTCTTACATGTTGAACTCATACTGAATTAACTTGTTTATGCATTTGGATATACTGGATCTCTCACTCAATTAATTATCTCAGCAACTATTTCTTTGAAAGAACTCACACTGAATTAACTTGTTTAGATTTATATCTCCTTCATCACATTTTTCGTATCCTGTACTAAGGAAAAAGCATGCAGTAGTTACTCCTTTTAGTGAGGTTTCATTGAAAAGATGATTCACTGTGCAATTTTTAGTTTCTCATTTATTCATCACACGATGTACATGTCATATGATACATCTGTCTTTTTTTTTTCAGCAAATGATGGTAGTTCAGGCAATGGTCATATGATGCAATGGTTCAATGAAGAGTCTCTCTTTGATTAGATGAAGAAATCGTTATCTATCTGTTAGATAACATATTTATGTATTTTGCTTAATGTCACATTGTTTGTGACTTTTGGATTTGTAAACCATTAAGTATGTTTTGTTTTATCCTCTATTACCTTGTCGGTTATTTAGACATGCACTACCCTATCCTTTTGTTTAGACCTGGGATGATCCATTAATCTACTTGCTATGGTATTTTAT
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| CDS seq | ATGTTTCGCACAAGATTTCGTATGCGAAAGCATCTCTTTTTACGTATCGTGCAAGCCTTAGGTCAATGGTCTCCATACTTTACTCAAAGAGAAGATTGTTCTGGTCGCACTGGCCTTTCTCCACTTCAGAAGTGCACAGCAGCGATCCGTATGTTAGCATATGGCACTCCTGCTGATGCTTTAGATGAATACTTGCTAATTGGCAAAAGCACTTCCTTAGAGTGCTTGGACACTTTTGCACGAGGGGTAGTTGAGGTCTTTGGTGGGCAATACTTGCGACGGCCCACAAGTGAGGATATAGATCATATACTACAAGTTAATGAATCTCGTGGCTTTCCGGGTATGTTAGGAAGTATTGATTGCATGCACTGGAGGTGGGAGAGTTGTCCGAGAGCTTGGAGGGGACAATTCACCCGTGGTGACTATAAAGTCCTAACAATTATCCTTGAAGCGGTTGCGTCATATGACCTTTGGATTTGGCATGCTTTCTTTGGTGTCGCTGGTTCTAACAACGATATAAATGTGCTGAATCAGTCCCCTTTATTCCTTGAACAAGTGAGAGGGGAGGCTCCTCGGGTTCATTTTTCTGTAAATGGGAATGAGTACAACAATGGGTACTACCTTGCTGATGGTATATACCCAGAATGGGCCAGCTTCATGAAGACGATATCACTTCCACAAATAGAGAAGCATAAATTGTTTGCTGAACGTCAAGAAGGTGCAAGGAAAGATGTGGAGCAGGCTTTTGGGGTATTGCAAGCCCGTTTCAACATTGTACGCCGTCCAGCAAAGAAGTGGAAGCGAAAGAGTGTTGGGAAAATCATGCTAGCTTGTGTGATTCTCCATAATATGATTGTTGAAGACGAGAGAGAGGATGCAATATGTGACATTGACCTCAATAGAATTCCTAGGACATCAATAGTTCTGCCTCCTGAAGTAACTTGTGATGATAACCCATGTTTTTCTGATGTGCTACGTAGGAGATCTGCTATTCGTGCTCGTTCAGTCCATACCCAGCTGAAAAATGATTTAATTGAGCATATTTGGAATCGGTTTGGAAATAGGCAGTCA
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| Protein seq | MFRTRFRMRKHLFLRIVQALGQWSPYFTQREDCSGRTGLSPLQKCTAAIRMLAYGTPADALDEYLLIGKSTSLECLDTFARGVVEVFGGQYLRRPTSEDIDHILQVNESRGFPGMLGSIDCMHWRWESCPRAWRGQFTRGDYKVLTIILEAVASYDLWIWHAFFGVAGSNNDINVLNQSPLFLEQVRGEAPRVHFSVNGNEYNNGYYLADGIYPEWASFMKTISLPQIEKHKLFAERQEGARKDVEQAFGVLQARFNIVRRPAKKWKRKSVGKIMLACVILHNMIVEDEREDAICDIDLNRIPRTSIVLPPEVTCDDNPCFSDVLRRRSAIRARSVHTQLKNDLIEHIWNRFGNRQS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0001860 | OsCMeo_09g0001860.01 | Chr09 | 3280018 | 3282639 | + | NAM | ||
| CDS seq | ATGTCTCGTCGGAGGAAGAGGGAGGTAGCGCCGCCTCCTCAGGCCGTCGTGAGCTCTACTGCTCCATTCGCTGTTCCTACGTCGCAGGCAGCGCCATATCCATATGGGGGTCTCGGGTTCCCGCCGCCACCGACAGCTTGGCTTGCTTCTCCACAGCCACAAGCCATGCCTGGCTCTTCTGCTTTCCATCCTCCTGCGGCCGGCAAGACTGATGTGCATCCTGATCTTGAAGAATGGCATAATATTTGCATGTTCATGTGTTCTATACGGGGGGTTGAATCTCGTCCGCCCGGCGGTTTCGTTAATTTTATCAATACCCCATCAAACCATGTCCATCATGTGGCCGAAGGGAGTCCATCACAGCCCATCAATGTTGTGAATGGACATGTCGCTAGGACTGATAAGCGCTTGTCATGGATGAAGGATGAAGACTTGAGATTGCTTGACAAGTCAAACAAAAGGAAGGCAGATTACAATGATGTTATCCCCCTTGATGATGAAGAAGATATACCACGACCAATAGGAGCCAAGGCATCTAAGGCGCAACGTAGTTGCAAAGAAAAGAGCAAGGTCCAAGTTTGTACAACTGAGCTTGAGGATGACATCCGTAAGTTTATGGATGCGCATGCAGCAACCAAGGAAGGGCAAAATGAAGTGTTAGAGACCCAAATACGGGTTTCTATTGACAACCATGCAGCCAAAAAGCTTAGTCGCCAGACAGCTATGATTGAAACCTATCGAGACTTAATGAACAAAGACACAAGGAAGATGCCTGACGATATGAGATCTGAGCTTGTTCACATGCTGAAATGCATGAGAGAAGAGATATTCAACAAAAATCAGTGA
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| Protein seq | MSRRRKREVAPPPQAVVSSTAPFAVPTSQAAPYPYGGLGFPPPPTAWLASPQPQAMPGSSAFHPPAAGKTDVHPDLEEWHNICMFMCSIRGVESRPPGGFVNFINTPSNHVHHVAEGSPSQPINVVNGHVARTDKRLSWMKDEDLRLLDKSNKRKADYNDVIPLDDEEDIPRPIGAKASKAQRSCKEKSKVQVCTTELEDDIRKFMDAHAATKEGQNEVLETQIRVSIDNHAAKKLSRQTAMIETYRDLMNKDTRKMPDDMRSELVHMLKCMREEIFNKNQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0001860 | OsCMeo_09g0001860.02 | Chr09 | 3279620 | 3285137 | + | IsoSeq | ||
| CDS seq | ATGTTTCGCACAAGATTTCGTATGCGAAAGCATCTCTTTTTACGTATCGTGCAAGCCTTAGGTCAATGGTCTCCATACTTTACTCAAAGAGAAGATTGTTCTGGTCGCACTGGCCTTTCTCCACTTCAGAAGTGCACAGCAGCGATCCGTATGTTAGCATATGGCACTCCTGCTGATGCTTTAGATGAATACTTGCTAATTGGCAAAAGCACTTCCTTAGAGTGCTTGGACACTTTTGCACGAGGGGTAGTTGAGGTCTTTGGTGGGCAATACTTGCGACGGCCCACAAGTGAGGATATAGATCATATACTACAAGTTAATGAATCTCGTGGCTTTCCGGGTATGTTAGGAAGTATTGATTGCATGCACTGGAGGTGGGAGAGTTGTCCGAGAGCTTGGAGGGGACAATTCACCCGTGGTGACTATAAAGTCCTAACAATTATCCTTGAAGCGGTTGCGTCATATGACCTTTGGATTTGGCATGCTTTCTTTGGTGTCGCTGGTTCTAACAACGATATAAATGTGCTGAATCAGTCCCCTTTATTCCTTGAACAAGTGAGAGGGGAGGCTCCTCGGGTTCATTTTTCTGTAAATGGGAATGAGTACAACAATGGGTACTACCTTGCTGATGGTATATACCCAGAATGGGCCAGCTTCATGAAGACGATATCACTTCCACAAATAGAGAAGCATAAATTGTTTGCTGAACGTCAAGAAGGTGCAAGGAAAGATGTGGAGCAGGCTTTTGGGGTATTGCAAGCCCGTTTCAACATTGTACGCCGTCCAGCAAAGAAGTGGAAGCGAAAGAGTGTTGGGAAAATCATGCTAGCTTGTGTGATTCTCCATAATATGATTGTTGAAGACGAGAGAGAGGATGCAATATGTGACATTGACCTCAATAGAATTCCTAGGACATCAATAGTTCTGCCTCCTGAAGTAACTTGTGATGATAACCCATGTTTTTCTGATGTGCTACGTAGGAGATCTGCTATTCGTGCTCGTTCAGTCCATACCCAGCTGAAAAATGATTTAATTGAGCATATTTGGAATCGGTTTGGAAATAGGCAGTCA
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| Protein seq | MFRTRFRMRKHLFLRIVQALGQWSPYFTQREDCSGRTGLSPLQKCTAAIRMLAYGTPADALDEYLLIGKSTSLECLDTFARGVVEVFGGQYLRRPTSEDIDHILQVNESRGFPGMLGSIDCMHWRWESCPRAWRGQFTRGDYKVLTIILEAVASYDLWIWHAFFGVAGSNNDINVLNQSPLFLEQVRGEAPRVHFSVNGNEYNNGYYLADGIYPEWASFMKTISLPQIEKHKLFAERQEGARKDVEQAFGVLQARFNIVRRPAKKWKRKSVGKIMLACVILHNMIVEDEREDAICDIDLNRIPRTSIVLPPEVTCDDNPCFSDVLRRRSAIRARSVHTQLKNDLIEHIWNRFGNRQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 3281561 | 3282005 | + | OsCMeo_09g0001860.02 | OsCMeo_09g0001860.02,OsCMeo_09g0001860.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.102739 | 6.809618 | 17.425333 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0872900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g06634 | RBH | 1.320378 | 0.652432 | 1.069466 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0872900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0622200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
