Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0000590 | OGI:09002640 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:1161348-1165085 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaataacctttcaactgctctgttgaggcaattgggaatggcttgatctgcagcccaccgagtttatgcaaccattttgcaatgtgcgtggcctgcctaaactcatccgtctcatcgattctgatggggaggagttttctgtgttttctctaattaaccataagcactttgtgccatacaatgcatccaaaaccttttttgaaccattaggagtaaactatctttttgccatcatgtctcttacagtgagtaatgaaatatcaatacagggaaacaaaattacccatttcactaaaaattttcctcttctctgaatttttgttcacgccaacgcttgagatgcaccttaaaatttcatttgtgattaaccagtccaccttactatttgaactcatacctgaccaattggcaaaacacatcctaggaccacctagcttatgtgtgctgaaaatacgttcagtcacttctcactggaatacaacatgtgtcgaattaaattgacgatgctcttatagcaaacatgttcaggcacttatccacccacacaccaagatcacgaccagttgatggtgtctagttgtgctatacggatcatgcaagaaaatcatctcaaatacatcatgctaacaagtgatgctgtattcattagtcacacttcactaacaaaagacattgattgtttgaattataaccattctttctggttatttttagataatgattctttctggtttaaaacatattttcatttcagacataggatataaaccttgtgtaaatgaattgtaaatgatgaatccttactggaagccagctctgactgctttaatgtagatgtacacctagcatcttgggcaggagcagccagaatgattcctgaaaacataaaaatctgaattgatctgcacttttcgttaactcagagtctgaagaagtcatcaacagtggtagcagtgaaagatatagctatacagaacagaacctgataggatgaggaagaacaaaatattgcaaactggaaggcggccaacgtcggaggcagaagaactgtcttattattggaataagacggtgtttcttcagtctggtcagaagttcagaatgtaaacactgaccacttttccgaaaattagtttgtccaaccatttagtggcttaattgatccctttcatggaactggacaaaaaactaaccaagaaagaaattatcactttaatccattttataatgaacatcgtgcatgactccaaaggttccagcacccattccatttcaattttagagactatataaccaaaatacgagatagctttacgcaatgaaaagacacagcagaataggctaccaggttgggatagttggcctagctcagcattatggagtcagcctggccgatgagttttgacaatccaatccatgagctgctcgctcactaataagcccggtctagtgagcttatgattatcgtgagcaccaaatggaaaatgatcatgataatcatatgtaccactgtaacattgaaggtgaaatacagttccatgaccgaaatgaactattctagtctaatgatctctcgctagagcacgttctttcaactattgccaagcatgtaaaatcctacaaataccatgttattgtgtatgcttgaccaatgagaagtaatttaaatgagaggcaccttagcacttcgcagctagacattatttctccttatatatttctactatcatataatggcataaaccactgttatatgaagcagaaaagactgacaaatttgtacgttcattctgccaataactacactgtaacaaatttggttcttacatcatttggctatgtctaattgtagaagctattaactcagaagctagatcctccatttttctattcttcatcgcattagcaatcttaaaaatcatgaaatatgcatatacacccattgacatcaactggatacttttagagtccaggattcagagtcatggcaggatttacatacatatctatgctataaatgcatcaatatacaagatgttagtcatagaaataagtgattatcctgctaaaagtgtgcgaccataggaaataatgtacaatcagtatagtgctggctagttctagctaaataaaaaaaatttagagtaattttacggtctgtaagaaggtaccaaatttataatagaaaaagtggtacctcataatacctaggtaccaaattttatactaaatttttggtaccttatggtacatacttaagaactaaaaattactaaaaaatttagctatggatcgaacctgtcatttttcactgaatcgaccgccgtagacggcagctgtacactgagccaaccaaatgaaatcagatcagaacctctatcactattcatattagaaattttagttagtcttatttacgtgaatgatataggatccaaatcgcggcggcaattaaatgtatcgtcacaaagcatctctttgtcatagcctggccacagctgtcagggcataacttgaatgtatgcatcacagatccacagacaggaaacaaaattaacggaggaagcaaatacaaccgttctttttttttacaaattggtctttatagaaaacttatttcaaaactagttcctgccaaaaactatatctaaaaatagaccgtcggctcagcgccaaagcggttggcgctgaggttgttcctgtcagcgccaatgggactggcgctaacatcgtgccagcgtggcggccgagccgctccctctgttgacgtggcagggccttagcgccaaatgctttggcgctgatccctttacacgataattagaaacttgcgctgcaattaattagcaatgtactggttgtgcaatggtaagtccttttgctgtagtaccctagaaccagggttcgaatccccatcaggtcagtcattttcgttccttttttttcttcaaatattcaatctacgtgcgtatttataaatgattaatgatggtctatgtttttgaaaaaaaaatatacggtactaatcaccctattacgtgccaaactgaaagaacccgtaatgtcctgcatacaagtctaagcatcacaccaccaggttacattcacataacaaatttgatgttacttttatattaattagcttgtattagggatcagcgccaaatacattagcgttgaccccagtccacgtggaatactagcagctcagcaaggatctcgatgccaaagtcggtggcattgagatgttatagctcagtgccatggtctttagcactgagccgacggcctatttctgggtatagtttttggcagggactagttttgaaataagttttctatgaggaccaatttatcaaaaaaaaagggcaaatacctgatgagatcttatcggtctttccaggtacaatcttgatttggcttgctgtacttatcatccaggaagccaacgacaatgcaaggactcgactcgagcagtgtagaaggggatgttgtcggacattgaggacaaggcggcagcgacccgggcaaatgacggagttataggtggcggaaggagaagcgacggttggtaccacacggaaagctgaggagggcgattgggatcgggtgtggcaaatgatgagagggaaagggtggtctgaggacgaccacggagatcgggcacgggagaggtgggaggtggacggcgattcggcgggagatgctccgcaggcagtgatctggcgaggacacat
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| CDS seq | atgtgtcctcgccagatcactgcctgcggagcatctcccgccgaatcgccgtccacctcccacctctcccgtgcccgatctccgtggtcgtcctcagaccaccctttccctctcatcatttgccacacccgatcccaatcgccctcctcagctttccgtgtggtaccaaccgtcgcttctccttccgccacctataactccgtcatttgcccgggtcgctgccgccttgtcctcaatgtccgacaacatccccttctacactgctcgagtcgagtccttgcattgtcgttggcttcctggatgataagaatcattctggctgctcctgcccaagatgctagaatcgatgagacggatgagtttaggcaggccacgcacattgcaaaatggttgcataaactcggtgggctgcagatcaagccattcccaattgcctcaacagagcagttgaaaggttattaa
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| Protein seq | MCPRQITACGASPAESPSTSHLSRARSPWSSSDHPFPLIICHTRSQSPSSAFRVVPTVASPSATYNSVICPGRCRLVLNVRQHPLLHCSSRVLALSLASWMIRIILAAPAQDARIDETDEFRQATHIAKWLHKLGGLQIKPFPIASTEQLKGY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0000590 | OsCMeo_09g0000590.01 | Chr09 | 1161348 | 1165085 | - | NAM | ||
| CDS seq | atgtgtcctcgccagatcactgcctgcggagcatctcccgccgaatcgccgtccacctcccacctctcccgtgcccgatctccgtggtcgtcctcagaccaccctttccctctcatcatttgccacacccgatcccaatcgccctcctcagctttccgtgtggtaccaaccgtcgcttctccttccgccacctataactccgtcatttgcccgggtcgctgccgccttgtcctcaatgtccgacaacatccccttctacactgctcgagtcgagtccttgcattgtcgttggcttcctggatgataagaatcattctggctgctcctgcccaagatgctagaatcgatgagacggatgagtttaggcaggccacgcacattgcaaaatggttgcataaactcggtgggctgcagatcaagccattcccaattgcctcaacagagcagttgaaaggttattaa
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| Protein seq | MCPRQITACGASPAESPSTSHLSRARSPWSSSDHPFPLIICHTRSQSPSSAFRVVPTVASPSATYNSVICPGRCRLVLNVRQHPLLHCSSRVLALSLASWMIRIILAAPAQDARIDETDEFRQATHIAKWLHKLGGLQIKPFPIASTEQLKGY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.653739 | 3.815443 | 3.134597 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0112100 | RBH | 3.992068 | 3.199662 | 5.644504 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0112100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0000600 | RBH | 0.707449 | 0.0 | 1.390295 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0011500 | RBH | 3.1700985 | 8.2229055 | 6.168711 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0022600 | RBH | 0.3063885 | 2.5992255 | 1.1035635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
