Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0025540 | OGI:08080250 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:28362203-28364635 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatccttttgtaggggactggagtcatgtttttaggaagagaggattaatatttgggcaggcagacaggcgttgagaaaaggaaaatctactagtagtactccgtacagtagagtacggagtacgtaggagcagctactactagtagtagtacgtaggattatgtagctggagtgctggacgcctgcactgcactgcacgcatatgatatgatactccggccagctggactggagtatgttatgtacggtcggagtcgggacgacattatattggaattagacggcggcggcggtgggcgtgccggcgtcgctcctgggctcggcggggctgtagatcgccgacggccggctgctgttccggggccggacctcctccagctgccgcaccacctccgccatggtgggccttgccgaagccaccggcgcgcagcaccccatcgccagcttcagcgcctgaagcagcccctcctccgcggggctacgcaccccgcgcgccacctccgcgtcgaacacctccatcatcgtcacctcctccagcaccgccgccttcaccaccgccggcagctctcccgacgccttccgccccatcagcagctccagcagcaatatcccgaacgcgtacacgtccgtccgcgggctgcacctccccctcgactgcagctccggcgccctgtacccgtccgccttccccaccgccgccgccaccagcagccggtgcactgcgtactccgccaccctcgccacgaaccactcgtccaccagcacgttggacgagcgcacgctgccgtgcgcctcgccgtgccccgcgtgcacgtacgccagcgcgcgcgccacgcccagcgcgatcttgtgccgccgcgcccacgtcaacgccggcctcatcccctggctctgctccccgtggccgtggaggagctcgtggagcgtccggttgccggggaagtagtcgtacaccagcagcttctctccgcggcgcccctggtagaaggcgcgcagcggaaccaggttgtcgtggcgcgcgcggccgatgcggcgcaccgccggcgcgcacgactcggcgtccttgcagcagccctcgcggaggaggcgcagctcgatgctgccgccgccctccgccagcttggccttgtagacggtgcagtagctggccttgttgaccacctgccccgtggcgttgagcacctcctccagcgtgaggtgctccccgccctggaacaccaccagcttcccctcgccgtcctccgtgagtgtcccttcctccggcggcaaaggcgctcgcctccaacggccctgcgcccagccgatggagagggaagccaggacgacggcggcggccatgagggcaatgacgatggcggcgacggcggaggaggtgagggggttgctggggaggcagtggtggggcagcggcgggccgcagagcgcggggctgttggcgaggaaggcgtcgggcggcagagaggcgaggtcggggggaagttggccggagaagttgttgtaggagaggttgagggagtggatgggggcgaggccgtgcgggatgggaccgtggaggcggttgtcggagaggtcgagggagcggagggcggggaaggcggtggtgactagggaggaggggaaggggccggagaggcggttggcggagaggtcgaggaggctgagggcgtcgcaggtggtgttgggggcgagggcggcggggtcggggattgggccgtggagggcgttgccgtggaggcggaggagggagagacgggcgttgccgctgcagaggttccagatggagagcgggagggagccggagaggcggttggaggcgaggtcgaggagggagagggcgggggcgttgccgagggcgagggggatgggcccggagagggagttgtgggcgaggaagatggaggcgagggcggagaaagcggcgagttcgggagggaggtggccggcgagggcggaggccgggaggcggatggagaggaggaggaggaggtcgtccgggaccgggtggtgggcgaggcctgcagagaggttgccgcaggggagctcgcgggggagggtggcggcggtggaccagcggaggccgcgccactggcagagcggggtggaggcggtccaggtggccagctgcgcgttccctcctacttcgccctccccctgcagcgccggcttcacgcgctccaggaggagcgccacctccgacttgccctcggccccggcagcggcagagaccaggaggaggaggaggcagcacatcatcacagatctcatctcatctgcttgcttcaattcccttgggcttggggtagagcaggtgaacacactggactgtggactggagcagtggagtgaaatagtgtgcaagtgagcaccactcctagtactactcaagtgaaagacaatgcttgctgagtgtgagtagtgcaatgcaaataat
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| CDS seq | atgagatctgtgatgatgtgctgcctcctcctcctcctggtctctgccgctgccggggccgagggcaagtcggaggtggcgctcctcctggagcgcgtgaagccggcgctgcagggggagggcgaagtaggagggaacgcgcagctggccacctggaccgcctccaccccgctctgccagtggcgcggcctccgctggtccaccgccgccaccctcccccgcgagctcccctgcggcaacctctctgcaggcctcgcccaccacccggtcccggacgacctcctcctcctcctctccatccgcctcccggcctccgccctcgccggccacctccctcccgaactcgccgctttctccgccctcgcctccatcttcctcgcccacaactccctctccgggcccatccccctcgccctcggcaacgcccccgccctctccctcctcgacctcgcctccaaccgcctctccggctccctcccgctctccatctggaacctctgcagcggcaacgcccgtctctccctcctccgcctccacggcaacgccctccacggcccaatccccgaccccgccgccctcgcccccaacaccacctgcgacgccctcagcctcctcgacctctccgccaaccgcctctccggccccttcccctcctccctagtcaccaccgccttccccgccctccgctccctcgacctctccgacaaccgcctccacggtcccatcccgcacggcctcgcccccatccactccctcaacctctcctacaacaacttctccggccaacttccccccgacctcgcctctctgccgcccgacgccttcctcgccaacagccccgcgctctgcggcccgccgctgccccaccactgcctccccagcaaccccctcacctcctccgccgtcgccgccatcgtcattgccctcatggccgccgccgtcgtcctggcttccctctccatcggctgggcgcagggccgttggaggcgagcgcctttgccgccggaggaagggacactcacggaggacggcgaggggaagctggtggtgttccagggcggggagcacctcacgctggaggaggtgctcaacgccacggggcaggtggtcaacaaggccagctactgcaccgtctacaaggccaagctggcggagggcggcggcagcatcgagctgcgcctcctccgcgagggctgctgcaaggacgccgagtcgtgcgcgccggcggtgcgccgcatcggccgcgcgcgccacgacaacctggttccgctgcgcgccttctaccaggggcgccgcggagagaagctgctggtgtacgactacttccccggcaaccggacgctccacgagctcctccacggccacggggagcagagccaggggatgaggccggcgttgacgtgggcgcggcggcacaagatcgcgctgggcgtggcgcgcgcgctggcgtacgtgcacgcggggcacggcgaggcgcacggcagcgtgcgctcgtccaacgtgctggtggacgagtggttcgtggcgagggtggcggagtacgcagtgcaccggctgctggtggcggcggcggtggggaaggcggacgggtacagggcgccggagctgcagtcgagggggaggtgcagcccgcggacggacgtgtacgcgttcgggatattgctgctggagctgctgatggggcggaaggcgtcgggagagctgccggcggtggtgaaggcggcggtgctggaggaggtgacgatgatggaggtgttcgacgcggaggtggcgcgcggggtgcgtagccccgcggaggaggggctgcttcaggcgctgaagctggcgatggggtgctgcgcgccggtggcttcggcaaggcccaccatggcggaggtggtgcggcagctggaggaggtccggccccggaacagcagccggccgtcggcgatctacagccccgccgagcccaggagcgacgccggcacgcccaccgccgccgccgtctaa
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| Protein seq | MRSVMMCCLLLLLVSAAAGAEGKSEVALLLERVKPALQGEGEVGGNAQLATWTASTPLCQWRGLRWSTAATLPRELPCGNLSAGLAHHPVPDDLLLLLSIRLPASALAGHLPPELAAFSALASIFLAHNSLSGPIPLALGNAPALSLLDLASNRLSGSLPLSIWNLCSGNARLSLLRLHGNALHGPIPDPAALAPNTTCDALSLLDLSANRLSGPFPSSLVTTAFPALRSLDLSDNRLHGPIPHGLAPIHSLNLSYNNFSGQLPPDLASLPPDAFLANSPALCGPPLPHHCLPSNPLTSSAVAAIVIALMAAAVVLASLSIGWAQGRWRRAPLPPEEGTLTEDGEGKLVVFQGGEHLTLEEVLNATGQVVNKASYCTVYKAKLAEGGGSIELRLLREGCCKDAESCAPAVRRIGRARHDNLVPLRAFYQGRRGEKLLVYDYFPGNRTLHELLHGHGEQSQGMRPALTWARRHKIALGVARALAYVHAGHGEAHGSVRSSNVLVDEWFVARVAEYAVHRLLVAAAVGKADGYRAPELQSRGRCSPRTDVYAFGILLLELLMGRKASGELPAVVKAAVLEEVTMMEVFDAEVARGVRSPAEEGLLQALKLAMGCCAPVASARPTMAEVVRQLEEVRPRNSSRPSAIYSPAEPRSDAGTPTAAAV |
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| Function | Putative kinase-like protein TMKL1 [UniProtKB/Swiss-Prot:P33543] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0025540 | OsCMeo_08g0025540.01 | Chr08 | 28362203 | 28364635 | - | NAM | ||
| CDS seq | atgagatctgtgatgatgtgctgcctcctcctcctcctggtctctgccgctgccggggccgagggcaagtcggaggtggcgctcctcctggagcgcgtgaagccggcgctgcagggggagggcgaagtaggagggaacgcgcagctggccacctggaccgcctccaccccgctctgccagtggcgcggcctccgctggtccaccgccgccaccctcccccgcgagctcccctgcggcaacctctctgcaggcctcgcccaccacccggtcccggacgacctcctcctcctcctctccatccgcctcccggcctccgccctcgccggccacctccctcccgaactcgccgctttctccgccctcgcctccatcttcctcgcccacaactccctctccgggcccatccccctcgccctcggcaacgcccccgccctctccctcctcgacctcgcctccaaccgcctctccggctccctcccgctctccatctggaacctctgcagcggcaacgcccgtctctccctcctccgcctccacggcaacgccctccacggcccaatccccgaccccgccgccctcgcccccaacaccacctgcgacgccctcagcctcctcgacctctccgccaaccgcctctccggccccttcccctcctccctagtcaccaccgccttccccgccctccgctccctcgacctctccgacaaccgcctccacggtcccatcccgcacggcctcgcccccatccactccctcaacctctcctacaacaacttctccggccaacttccccccgacctcgcctctctgccgcccgacgccttcctcgccaacagccccgcgctctgcggcccgccgctgccccaccactgcctccccagcaaccccctcacctcctccgccgtcgccgccatcgtcattgccctcatggccgccgccgtcgtcctggcttccctctccatcggctgggcgcagggccgttggaggcgagcgcctttgccgccggaggaagggacactcacggaggacggcgaggggaagctggtggtgttccagggcggggagcacctcacgctggaggaggtgctcaacgccacggggcaggtggtcaacaaggccagctactgcaccgtctacaaggccaagctggcggagggcggcggcagcatcgagctgcgcctcctccgcgagggctgctgcaaggacgccgagtcgtgcgcgccggcggtgcgccgcatcggccgcgcgcgccacgacaacctggttccgctgcgcgccttctaccaggggcgccgcggagagaagctgctggtgtacgactacttccccggcaaccggacgctccacgagctcctccacggccacggggagcagagccaggggatgaggccggcgttgacgtgggcgcggcggcacaagatcgcgctgggcgtggcgcgcgcgctggcgtacgtgcacgcggggcacggcgaggcgcacggcagcgtgcgctcgtccaacgtgctggtggacgagtggttcgtggcgagggtggcggagtacgcagtgcaccggctgctggtggcggcggcggtggggaaggcggacgggtacagggcgccggagctgcagtcgagggggaggtgcagcccgcggacggacgtgtacgcgttcgggatattgctgctggagctgctgatggggcggaaggcgtcgggagagctgccggcggtggtgaaggcggcggtgctggaggaggtgacgatgatggaggtgttcgacgcggaggtggcgcgcggggtgcgtagccccgcggaggaggggctgcttcaggcgctgaagctggcgatggggtgctgcgcgccggtggcttcggcaaggcccaccatggcggaggtggtgcggcagctggaggaggtccggccccggaacagcagccggccgtcggcgatctacagccccgccgagcccaggagcgacgccggcacgcccaccgccgccgccgtctaa
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| Protein seq | MRSVMMCCLLLLLVSAAAGAEGKSEVALLLERVKPALQGEGEVGGNAQLATWTASTPLCQWRGLRWSTAATLPRELPCGNLSAGLAHHPVPDDLLLLLSIRLPASALAGHLPPELAAFSALASIFLAHNSLSGPIPLALGNAPALSLLDLASNRLSGSLPLSIWNLCSGNARLSLLRLHGNALHGPIPDPAALAPNTTCDALSLLDLSANRLSGPFPSSLVTTAFPALRSLDLSDNRLHGPIPHGLAPIHSLNLSYNNFSGQLPPDLASLPPDAFLANSPALCGPPLPHHCLPSNPLTSSAVAAIVIALMAAAVVLASLSIGWAQGRWRRAPLPPEEGTLTEDGEGKLVVFQGGEHLTLEEVLNATGQVVNKASYCTVYKAKLAEGGGSIELRLLREGCCKDAESCAPAVRRIGRARHDNLVPLRAFYQGRRGEKLLVYDYFPGNRTLHELLHGHGEQSQGMRPALTWARRHKIALGVARALAYVHAGHGEAHGSVRSSNVLVDEWFVARVAEYAVHRLLVAAAVGKADGYRAPELQSRGRCSPRTDVYAFGILLLELLMGRKASGELPAVVKAAVLEEVTMMEVFDAEVARGVRSPAEEGLLQALKLAMGCCAPVASARPTMAEVVRQLEEVRPRNSSRPSAIYSPAEPRSDAGTPTAAAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.445601 | 1.626485 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0564700 | RBH | 0.582916 | 0.327260 | 1.182930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g45060 | RBH | 0.354222 | 0.197188 | 0.283697 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0564700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0025780 | RBH | 0.0 | 5.096372 | 1.547613 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0025540 | RBH | 0.0 | 1.547029 | 0.452011 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020860 | RBH | 0.416674 | 1.582298 | 1.878069 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0025790 | RBH | 0.0 | 0.048408 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025600 | RBH | 0.861941 | 9.359458 | 1.851270 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0450500 | RBH | 0.697049 | 1.681516 | 2.1018005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0025350 | RBH | 0.0 | 0.066143 | 0.152468 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0469300 | RBH | 0.8181545 | 0.4972795 | 1.859008 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024760 | RBH | 0.0 | 0.150155 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0025100 | RBH | 0.0 | 3.737364 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024920 | RBH | 0.0 | 5.881930 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025830 | RBH | 0.0 | 0.264365 | 0.408332 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0025100 | RBH | 0.0 | 1.180518 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025270 | RBH | 0.0 | 1.242796 | 0.989454 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025430 | RBH | 0.0 | 1.829006 | 0.710595 |
