Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0025150 | OGI:08079600 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:28093814-28097535 | ||||||||
| Gene Symbol | CYP18-2, OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 | ||||||||||
| DNA seq | gaacataaaaaaaaatccctgagttggtacagcatgtaacatgctgaatatcagctgaattacatcatgcgctcaaaatgacttcatatatttcgaaagttatttccactgataatcactgaacactactcgttcaggtgagaataattaagacggatcacgattcatgagttgttaataactaaactagcccatccgaaacgatacaccactgcataagcacggaacaagcaggaaacaattcctgaaactgacagcagctacaactccaaataccagaagccatgagtgacaccgagtagacccgctgtgcctcaatctttgaccacagtccgcaggattttcacttcatggatgggcctgaatcaacaaagataacaagtctgaataaattcgacaggaaaaatgcatatcgatcattttccctttcagttttacaggcaccatacatggattgtacacatgatttggttatctccctcccaccattcgccctcactcacccgcagctctcattgttctctaccatgatgaatactttctccgtttcacattataagttaaaattataagacgatttgagttttggatagattaatgcatggatccatgtatgtgctaaactgcttatggatgttagtgaatctagccaacgaatggagaggccaaaacatcttataatgtggaacgaagggagtagatcctagccaaatctactaacgctgcaactcatcatcccaaatatttccctcctgctgctaccctgctacctactttgccattgcatatgcatggtaatagtgaggcgttgcactcactcaactctccctcaggacaaatcggatgctatatctattatgtgatatgtacaaccatggcatatagttttggtgttacctatcacttttgtctgtctggacacttccaaggcgcttgacaatttccattccttttgatactctcccaaaaattgtatgctttcctggaataggaaaaccatataaccttaatagcatgaaaatgtacctgactttcaatgtggaaatttcgaaaagaacatatttgtaaaagcaatccagagtgcgaaatacaatgtcaaaaacagatgtaagcagtgacatcctgaggggcaaaatcttccagggttggcaattaggaagaaaaaacagtgatggtgctagcagaagtccttcacaattgcattacacattaacaacaatgcagtccaatgtaccaacatcacaatacagaagaacaggagtcccagaaatccaccagaagtctccaagaatcacgctcctagtgattgcactagactcaaagtcactctacaacaggctcttcaaaagctagtcccaagtttttcttgtaattattccaaatctaatattaaaaaaaaacttgcagtgatttgatagtaaagtttttaggttgcaatctgagaaattgttgattaactcctacagagtgaacttcagctttccagggcaatgcaaagaacattcatagacagcaaacaagcgaaagcataatgtaaaactggagcaacaatgagacagtacagtagactcaccatcaagtgactgacaaggcgcaagagtaataaagaactggcttccatttgtatttggaccagcgttggccatcgacagaattccagcgccggtgtgcttcagttctggcctaatctcatcctcgaactttgctctgtaaaaacacagcaagaacacaaacatttgtaaggattcaaacagagccccaaatagaatgcaataacggcgtggcgtggaaaataacaaggaatagtaaatttagctacttttacaaacaagatgctacaggagcccagcaacaatggtacaatcgctaccaaatgctgctacacaataggtactaattccctattatgtttttaacaggtagaaatacagtgctatccatcatgggttgatgatgtgagctcaaaatacagttcaaaatcgagtgttacagttgcaatgcaatcttacaaattgaaagaggaggaaagcaagaaatatgctgacccgtagatggattcgccgcctcttccggtgccagtaggatccccaccttgcacgatgaaatcctaaaccgcaagaagataaaagcagtaaagaaaacctgaccggattgattaatactcctattaagcaaagcagcaagcaaggagtgggcagaaaccttgatgatgcgatggaagatgacgttgtcgtagtagccgcggcgcgagagctcgaggaagttcctgcaggtcttgggcgcgtgcttgtagtacatctgtcgatcgacgagagaagcgaccaaatcaaatcaaggagcaagaacttaactcggtgtatgccgacgaaaagaatagctcaagagagagacggccgagccgagccgagccaatggtacctcgatggtgaaggcgcccatggatgtctccagggtgacctccggcgtgccgccgtcggcgctgccccacatcttgggcactggacacggcggcggcgcgagaagagaagagaagaggagagattcccttctctcttcggaggaggaggggaggccacaaatacgagggcttctctacataattcttatacactataaattacagaaagcccctcaccaaatataagaattgctccttattttcttgtgaaagtgaaaccgaagaggagaagttttgttttcttttcttttccttgtgaaagtgaaacaaaacaagtgaactcaacttgttgctctccttgtcttttggttcaaagaatgtaaagtgaaaaggctacctgtttattcattcatgatagatatagtacatagataccacttggatcatgcatagcaggttaatgaagaaacaaaagcgaagatttctagatagtgctaatacagatcgagtctcctactacagtacttaacaaagcaatagggatgcagacagtgacgacattcagatttagtgcccactgtacaacatacacagcaataggatgcatacagtgactagtgcagattccaactactactctttggtggcttccggctctgcattttcttggttcttgttgttcttccttgggccatatttgaagatggagaggtgcttgatatactgcggtgatgcttccatggccttcctaatctgccccccccccccacgctctttgatgtagctgtcagcagttcagcatcttaaacacttctaaaacactaggcctaattaagatctctccttattcagtatgtagtactttctccgtttcacaatgtaagtcattctagcattttccacaatgtaattaagatgaatatgaaaaatgctaaaatgacttatagggagtacttcaataatcaatagtatgaagtattatgcagtagatactcgtattgaacctgaccagtcagacatcagcgccacatgaacggctacaagaaagaaaagctcatagcttcataaaattcacaaattctgtgcaccaacatactggtagtattggacttgtgctacagtggagcagcaatttcacatctttttacagtgaaaaaaatgaagttagtctagttacctaccgggttggggtagtcggggccgtaatcggcggtgaggaggaagtaggcggcggtggcggcgccgatcattgccgtacgccggactattctgtcggcttttgaccttggatccatcaatctttccttcccaagcttcttcactt
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| CDS seq | atggatccaaggtcaaaagccgacagaatagtccggcgtacggcaatgatcggcgccgccaccgccgcctacttcctcctcaccgccgattacggccccgactaccccaacccgatgtactacaagcacgcgcccaagacctgcaggaacttcctcgagctctcgcgccgcggctactacgacaacgtcatcttccatcgcatcatcaaggatttcatcgtgcaaggtggggatcctactggcaccggaagaggcggcgaatccatctacggagcaaagttcgaggatgagattaggccagaactgaagcacaccggcgctggaattctgtcgatggccaacgctggtccaaatacaaatggaagccagttctttattactcttgcgccttgtcagtcacttgatggaaagcatacaatttttgggagagtatcaaaaggaatggaaattgtcaagcgccttggaagtgtccagacagacaaaagtgataggcccatccatgaagtgaaaatcctgcggactgtggtcaaagattga
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| Protein seq | MDPRSKADRIVRRTAMIGAATAAYFLLTADYGPDYPNPMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD |
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| Function | Peptidyl-prolyl cis-trans isomerase CYP18-2 [UniProtKB/Swiss-Prot:Q9SIH1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0025150 | OsCMeo_08g0025150.02 | Chr08 | 28093814 | 28096425 | - | NAM | ||
| CDS seq | atgtggggcagcgccgacggcggcacgccggaggtcaccctggagacatccatgggcgccttcaccatcgagatgtactacaagcacgcgcccaagacctgcaggaacttcctcgagctctcgcgccgcggctactacgacaacgtcatcttccatcgcatcatcaaggatttcatcgtgcaaggtggggatcctactggcaccggaagaggcggcgaatccatctacggagcaaagttcgaggatgagattaggccagaactgaagcacaccggcgctggaattctgtcgatggccaacgctggtccaaatacaaatggaagccagttctttattactcttgcgccttgtcagtcacttgatggaaagcatacaatttttgggagagtatcaaaaggaatggaaattgtcaagcgccttggaagtgtccagacagacaaaagtgataggcccatccatgaagtgaaaatcctgcggactgtggtcaaagattga
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| Protein seq | MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0025150 | OsCMeo_08g0025150.01 | Chr08 | 28093814 | 28097535 | - | NAM | ||
| CDS seq | atggatccaaggtcaaaagccgacagaatagtccggcgtacggcaatgatcggcgccgccaccgccgcctacttcctcctcaccgccgattacggccccgactaccccaacccgatgtactacaagcacgcgcccaagacctgcaggaacttcctcgagctctcgcgccgcggctactacgacaacgtcatcttccatcgcatcatcaaggatttcatcgtgcaaggtggggatcctactggcaccggaagaggcggcgaatccatctacggagcaaagttcgaggatgagattaggccagaactgaagcacaccggcgctggaattctgtcgatggccaacgctggtccaaatacaaatggaagccagttctttattactcttgcgccttgtcagtcacttgatggaaagcatacaatttttgggagagtatcaaaaggaatggaaattgtcaagcgccttggaagtgtccagacagacaaaagtgataggcccatccatgaagtgaaaatcctgcggactgtggtcaaagattga
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| Protein seq | MDPRSKADRIVRRTAMIGAATAAYFLLTADYGPDYPNPMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0025150 | OsCMeo_08g0025150.03 | Chr08 | 28093814 | 28096425 | - | NAM | ||
| CDS seq | atgtggggcagcgccgacggcggcacgccggaggtcaccctggagacatccatgggcgccttcaccatcgagatgtactacaagcacgcgcccaagacctgcaggaacttcctcgagctctcgcgccgcggctactacgacaacgtcatcttccatcgcatcatcaaggatttcatcgtgcaaggtggggatcctactggcaccggaagaggcggcgaatccatctacgggtcagcatatttcttgctttcctcctctttcaatttagcaaagttcgaggatgagattaggccagaactgaagcacaccggcgctggaattctgtcgatggccaacgctggtccaaatacaaatggaagccagttctttattactcttgcgccttgtcagtcacttgatggaaagcatacaatttttgggagagtatcaaaaggaatggaaattgtcaagcgccttggaagtgtccagacagacaaaagtgataggcccatccatgaagtgaaaatcctgcggactgtggtcaaagattga
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| Protein seq | MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRGGESIYGSAYFLLSSSFNLAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 28095520 | 28095859 | - | OsCMeo_08g0025150.03 | OsCMeo_08g0025150.03,OsCMeo_08g0025150.01,OsCMeo_08g0025150.02 | All |
| AF | Chr08 | 28096111 | 28097535 | - | OsCMeo_08g0025150.02,OsCMeo_08g0025150.03 | OsCMeo_08g0025150.02,OsCMeo_08g0025150.01,OsCMeo_08g0025150.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.522091 | 21.520544 | 17.300797 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0559501 | RBH | 0.396915 | 0.0 | 1.077105 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44520 | RBH | 0.976604 | 2.317274 | 6.856818 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0559501 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0025390 | RBH | 2.548735 | 21.185156 | 9.053811 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0025150 | RBH | 0.773790 | 7.670146 | 11.914473 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020810 | RBH | 1.638700 | 16.976473 | 4.535461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0025400 | RBH | 0.506263 | 1.393357 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025170 | RBH | 18.978125 | 48.369301 | 30.038090 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0446200 | RBH | 22.941163 | 65.7561415 | 202.9446715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024950 | RBH | 1.045313 | 2.272370 | 3.503185 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0465200 | RBH | 32.3933885 | 82.8867185 | 130.9918785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024370 | RBH | 1.097863 | 0.507850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024720 | RBH | 0.990701 | 38.863384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024520 | RBH | 16.224899 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025430 | RBH | 3.511322 | 1.706169 | 5.469485 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024710 | RBH | 0.958139 | 15.678511 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024870 | RBH | 1.113510 | 12.812088 | 5.359165 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025030 | RBH | 3.552234 | 42.565876 | 39.588528 |
