Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0021900 | OGI:08073360 | 7/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:25687606-25691294 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tactaaaatgtcactcccttttggtgattatatttggcaggtagagagtaggatagatttcacaacggcctgtgaggttcacagcttcttcatgctgaagcaacaactctataaaatagttcttagctaggactaactttcaacacatactcgatgactcgatgtgactagttgtgcaatgcagaagagagtttatttcatggataacttatactgattacattcggatgaatggcatttactgtagctcaaccaaaattaccacaacaacaaaagaattacagtcttaatgtacacaaaaatgagggggagacaaactccctgaagagtttgagtacgcaaaatggatgttatacacttggctgtcccctaggaacctctcctcgatttagagtagatcccaaatgctaggaggtaaggaggaacaatgaggaagacatgtatatctggagataagctttgattgcagcacagatgttcccttcaataggcagctgtcgctggcaaaactctacaaactgtaacaagcatggtggcatgcaagtactgtcgaagtttgcttctagggggatagaccgaaagaagacgcaatttctagcaagtgctgccctgttgaattggttatgaatactatagggactacaggctgaaacatgatttcgttgtcgtccagttcaaggtcatagcatgtttttagttccattgctttagattctgcagcttcagcttctttccgcagaacctcaacctcttcgctatcgtctgtttcagttgcagcagtcaattctgctctagcagcagcagcatccaacctgagtcttttgtaacttgtcatggctgattctttttctttgagtataataagcccttcgcattcctgtattttgtcagtggtagctgtgatatccttttcgattacctccagatcagtagcagctttctcaagtttagcatgaagttcttccttttcagagttaagcgctttagcctcagcagctatccttccagcttccttgaaattccttgcagcggcagcaactctcttttcagcctctagttcagggccccttttgtcaataaagctcaatttctgcttaaatgtagctatatcttgctgaatgacagccttccttgaagatatctcctgcaagtcatcaaactcaataagtacataaaaatatttgtgttcttacttacacggtgtcctctaaaaattaaacatgatgatcttttttatcaacatgaaaaaggattaatgtacctgaagactgattcttgcatctgatgtttgttgcctgagcacttggatatcttgcaaaatttcctcctccatttttaacaacccaattctgtcctcccttgacttcaaaattgacgatgcaagcttccttctgatatgtactgactgctggcaagcttttgcttcagaggaacaatcattgataatttcccgtaattttgagtctttctgttctgataaggagatgaaactatcaatttcattcttttttagggcaagtgcttgagcctctgagtccattttagtttgtgcttcctgaagggttttgagctttagatcaatatctgtctgggatccataaaatctggagacaacggcagtgatcctttcttgaacctcctggatctgagcattgttttcagctatctctgcttctttcaaccttaccaatttcaggagctcagttaactcctctgcaagggtatcccctttcttactcagcatgtccttttctcttttgtcatcttcaaccagatgttctatcgaatcttccaatcctgaacgtgctgccaaaaccaattcactttctacttccgtctctagtttctttgtttctagcaattccattgattctcgccacccttctatttctttcaatgatatttcttctgcctccttgcttgctgaatcagtgtgatcagtagcatcctaaaaaacagagttttaatgttgataagtaataatcaactagaagaacagaacacaatgcactgatactttgaagcatacagggctgctttttatcactcaggtttaacttacaaacttaagctaaaatttcttttcacggcattttcagttttttatgtacttactactacagtctatagttcatgatgatcagatgcaatgccacaagacaacttttgtaggagaatatgacaactgtgcaaatgaatttatgacatagtggccaaaatattcagcatagactaggatatctggaaaatgaagccttattgccttattggaccatgcgtttaaaatgtattctgcaatgattcattactaagcacttagaattaggtcatgcttgaatagctatttgaaaatattagagttcaagtagggaaacttcaggtttggtatcggtttccaagcaatggttgcttgcaggggagcctggattccaggaagtacatatcttgtcaagagtccagacctcagagtctcatgcaaagtgcgtaagaagaaattcagctaaattacctttgcaaaatgctccaggagtgaagcagcttcctcctctgcggcaatgcgggaatccagcacatcctgcaattccaaatccaccgaatcataattgagctccgcatcacgcagcgctgtcaacaaccgatccttgtccttctccaatgccgcaagggagtcgctgatcttctcggccctctcaaagtcctcggcctcgcacgcctcttcaagctccctctccaaatccttgtgcctggatgccgcagagcccacgtcctccgcaacctttcgccgcctaccagccaactgcctcctcttggcagccacagcagtggctctctgctggatagactcgtgcttgccggagatttgggatctaagaagagccaatctctcctcaatccccattgcttcagccccagcacctccatcctcctccaattcaccatcctcttctttcacatgaagagaattctcatccggatccaccaccgctaccgctgcagcctgctcaacgccattatcaaggtgttcgaggtggtggactgggatggtcggagcggattgatgatgcatcgaagcatcggggaggacgctgccatggattacactagcggtagcagctgcggtggcggtcgtagcagcaattgcaacggcaggaggggaaggaggcgcgggttgaggcgagcggccatacccgatgcgcacggccctcttcttcttgcggagcgacgaggaggccgaggaggacgcctgccgggccagaacggcgacgggtgcagccggagccggcaccggcgaggggggcgcggcggcggagtggtcctgatcttgaccttggtgggcgccgctcaggtcgacgggggactgcggggacaggagggtgagatcggagaacaggtcctcatccagaggcggcggcggctgctgctgggaggccgccccgtcagctccggcgacggcggcatcgtcgcgaggggtgggcggcttggggtcgggggcctcggcgacgggcggcgcgggatcgggatcgacggagagggacggggtgaagaggaccatcccctcgaagagcgagtccccatcgccgccgccgccgccgccgccgtcgtgggactccatcggcggcgaggtgacgtgtcggggaagaagacgaagacgagaagagggtggagtgggaagaggagtagcaatggat
More
|
||||||||||
| CDS seq | atggagtcccacgacggcggcggcggcggcggcggcgatggggactcgctcttcgaggggatggtcctcttcaccccgtccctctccgtcgatcccgatcccgcgccgcccgtcgccgaggcccccgaccccaagccgcccacccctcgcgacgatgccgccgtcgccggagctgacggggcggcctcccagcagcagccgccgccgcctctggatgaggacctgttctccgatctcaccctcctgtccccgcagtcccccgtcgacctgagcggcgcccaccaaggtcaagatcaggaccactccgccgccgcgcccccctcgccggtgccggctccggctgcacccgtcgccgttctggcccggcaggcgtcctcctcggcctcctcgtcgctccgcaagaagaagagggccgtgcgcatcgggtatggccgctcgcctcaacccgcgcctccttcccctcctgccgttgcaattgctgctacgaccgccaccgcagctgctaccgctagtgtaatccatggcagcgtcctccccgatgcttcgatgcatcatcaatccgctccgaccatcccagtccaccacctcgaacaccttgataatggcgttgagcaggctgcagcggtagcggtggtggatccggatgagaattctcttcatgtgaaagaagaggatggtgaattggaggaggatggaggtgctggggctgaagcaatggggattgaggagagattggctcttcttagatcccaaatctccggcaagcacgagtctatccagcagagagccactgctgtggctgccaagaggaggcagttggctggtaggcggcgaaaggttgcggaggacgtgggctctgcggcatccaggcacaaggatttggagagggagcttgaagaggcgtgcgaggccgaggactttgagagggccgagaagatcagcgactcccttgcggcattggagaaggacaaggatcggttgttgacagcgctgcgtgatgcggagctcaattatgattcggtggatttggaattgcaggatgtgctggattcccgcattgccgcagaggaggaagctgcttcactcctggagcattttgcaaaggatgctactgatcacactgattcagcaagcaaggaggcagaagaaatatcattgaaagaaatagaagggtggcgagaatcaatggaattgctagaaacaaagaaactagagacggaagtagaaagtgaattggttttggcagcacgttcaggattggaagattcgatagaacatctggttgaagatgacaaaagagaaaaggacatgctgagtaagaaaggggatacccttgcagaggagttaactgagctcctgaaattggtaaggttgaaagaagcagagatagctgaaaacaatgctcagatccaggaggttcaagaaaggatcactgccgttgtctccagattttatggatcccagacagatattgatctaaagctcaaaacccttcaggaagcacaaactaaaatggactcagaggctcaagcacttgccctaaaaaagaatgaaattgatagtttcatctccttatcagaacagaaagactcaaaattacgggaaattatcaatgattgttcctctgaagcaaaagcttgccagcagtcagtacatatcagaaggaagcttgcatcgtcaattttgaagtcaagggaggacagaattgggttgttaaaaatggaggaggaaattttgcaagatatccaagtgctcaggcaacaaacatcagatgcaagaatcagtcttcaggagatatcttcaaggaaggctgtcattcagcaagatatagctacatttaagcagaaattgagctttattgacaaaaggggccctgaactagaggctgaaaagagagttgctgccgctgcaaggaatttcaaggaagctggaaggatagctgctgaggctaaagcgcttaactctgaaaaggaagaacttcatgctaaacttgagaaagctgctactgatctggaggtaatcgaaaaggatatcacagctaccactgacaaaatacaggaatgcgaagggcttattatactcaaagaaaaagaatcagccatgacaagttacaaaagactcaggttggatgctgctgctgctagagcagaattgactgctgcaactgaaacagacgatagcgaagaggttgaggttctgcggaaagaagctgaagctgcagaatctaaagcaatggaactaaaaacatgctatgaccttgaactggacgacaacgaaatcatgtttcagcctgtagtccctatagtattcataaccaattcaacagggcagcacttgctagaaattgcgtcttctttcggtctatccccctag
More
|
||||||||||
| Protein seq | MESHDGGGGGGGDGDSLFEGMVLFTPSLSVDPDPAPPVAEAPDPKPPTPRDDAAVAGADGAASQQQPPPPLDEDLFSDLTLLSPQSPVDLSGAHQGQDQDHSAAAPPSPVPAPAAPVAVLARQASSSASSSLRKKKRAVRIGYGRSPQPAPPSPPAVAIAATTATAAATASVIHGSVLPDASMHHQSAPTIPVHHLEHLDNGVEQAAAVAVVDPDENSLHVKEEDGELEEDGGAGAEAMGIEERLALLRSQISGKHESIQQRATAVAAKRRQLAGRRRKVAEDVGSAASRHKDLERELEEACEAEDFERAEKISDSLAALEKDKDRLLTALRDAELNYDSVDLELQDVLDSRIAAEEEAASLLEHFAKDATDHTDSASKEAEEISLKEIEGWRESMELLETKKLETEVESELVLAARSGLEDSIEHLVEDDKREKDMLSKKGDTLAEELTELLKLVRLKEAEIAENNAQIQEVQERITAVVSRFYGSQTDIDLKLKTLQEAQTKMDSEAQALALKKNEIDSFISLSEQKDSKLREIINDCSSEAKACQQSVHIRRKLASSILKSREDRIGLLKMEEEILQDIQVLRQQTSDARISLQEISSRKAVIQQDIATFKQKLSFIDKRGPELEAEKRVAAAARNFKEAGRIAAEAKALNSEKEELHAKLEKAATDLEVIEKDITATTDKIQECEGLIILKEKESAMTSYKRLRLDAAAARAELTAATETDDSEEVEVLRKEAEAAESKAMELKTCYDLELDDNEIMFQPVVPIVFITNSTGQHLLEIASSFGLSP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0021900 | OsCMeo_08g0021900.01 | Chr08 | 25687606 | 25691294 | - | NAM | ||
| CDS seq | atggagtcccacgacggcggcggcggcggcggcggcgatggggactcgctcttcgaggggatggtcctcttcaccccgtccctctccgtcgatcccgatcccgcgccgcccgtcgccgaggcccccgaccccaagccgcccacccctcgcgacgatgccgccgtcgccggagctgacggggcggcctcccagcagcagccgccgccgcctctggatgaggacctgttctccgatctcaccctcctgtccccgcagtcccccgtcgacctgagcggcgcccaccaaggtcaagatcaggaccactccgccgccgcgcccccctcgccggtgccggctccggctgcacccgtcgccgttctggcccggcaggcgtcctcctcggcctcctcgtcgctccgcaagaagaagagggccgtgcgcatcgggtatggccgctcgcctcaacccgcgcctccttcccctcctgccgttgcaattgctgctacgaccgccaccgcagctgctaccgctagtgtaatccatggcagcgtcctccccgatgcttcgatgcatcatcaatccgctccgaccatcccagtccaccacctcgaacaccttgataatggcgttgagcaggctgcagcggtagcggtggtggatccggatgagaattctcttcatgtgaaagaagaggatggtgaattggaggaggatggaggtgctggggctgaagcaatggggattgaggagagattggctcttcttagatcccaaatctccggcaagcacgagtctatccagcagagagccactgctgtggctgccaagaggaggcagttggctggtaggcggcgaaaggttgcggaggacgtgggctctgcggcatccaggcacaaggatttggagagggagcttgaagaggcgtgcgaggccgaggactttgagagggccgagaagatcagcgactcccttgcggcattggagaaggacaaggatcggttgttgacagcgctgcgtgatgcggagctcaattatgattcggtggatttggaattgcaggatgtgctggattcccgcattgccgcagaggaggaagctgcttcactcctggagcattttgcaaaggatgctactgatcacactgattcagcaagcaaggaggcagaagaaatatcattgaaagaaatagaagggtggcgagaatcaatggaattgctagaaacaaagaaactagagacggaagtagaaagtgaattggttttggcagcacgttcaggattggaagattcgatagaacatctggttgaagatgacaaaagagaaaaggacatgctgagtaagaaaggggatacccttgcagaggagttaactgagctcctgaaattggtaaggttgaaagaagcagagatagctgaaaacaatgctcagatccaggaggttcaagaaaggatcactgccgttgtctccagattttatggatcccagacagatattgatctaaagctcaaaacccttcaggaagcacaaactaaaatggactcagaggctcaagcacttgccctaaaaaagaatgaaattgatagtttcatctccttatcagaacagaaagactcaaaattacgggaaattatcaatgattgttcctctgaagcaaaagcttgccagcagtcagtacatatcagaaggaagcttgcatcgtcaattttgaagtcaagggaggacagaattgggttgttaaaaatggaggaggaaattttgcaagatatccaagtgctcaggcaacaaacatcagatgcaagaatcagtcttcaggagatatcttcaaggaaggctgtcattcagcaagatatagctacatttaagcagaaattgagctttattgacaaaaggggccctgaactagaggctgaaaagagagttgctgccgctgcaaggaatttcaaggaagctggaaggatagctgctgaggctaaagcgcttaactctgaaaaggaagaacttcatgctaaacttgagaaagctgctactgatctggaggtaatcgaaaaggatatcacagctaccactgacaaaatacaggaatgcgaagggcttattatactcaaagaaaaagaatcagccatgacaagttacaaaagactcaggttggatgctgctgctgctagagcagaattgactgctgcaactgaaacagacgatagcgaagaggttgaggttctgcggaaagaagctgaagctgcagaatctaaagcaatggaactaaaaacatgctatgaccttgaactggacgacaacgaaatcatgtttcagcctgtagtccctatagtattcataaccaattcaacagggcagcacttgctagaaattgcgtcttctttcggtctatccccctag
More
|
|||||||
| Protein seq | MESHDGGGGGGGDGDSLFEGMVLFTPSLSVDPDPAPPVAEAPDPKPPTPRDDAAVAGADGAASQQQPPPPLDEDLFSDLTLLSPQSPVDLSGAHQGQDQDHSAAAPPSPVPAPAAPVAVLARQASSSASSSLRKKKRAVRIGYGRSPQPAPPSPPAVAIAATTATAAATASVIHGSVLPDASMHHQSAPTIPVHHLEHLDNGVEQAAAVAVVDPDENSLHVKEEDGELEEDGGAGAEAMGIEERLALLRSQISGKHESIQQRATAVAAKRRQLAGRRRKVAEDVGSAASRHKDLERELEEACEAEDFERAEKISDSLAALEKDKDRLLTALRDAELNYDSVDLELQDVLDSRIAAEEEAASLLEHFAKDATDHTDSASKEAEEISLKEIEGWRESMELLETKKLETEVESELVLAARSGLEDSIEHLVEDDKREKDMLSKKGDTLAEELTELLKLVRLKEAEIAENNAQIQEVQERITAVVSRFYGSQTDIDLKLKTLQEAQTKMDSEAQALALKKNEIDSFISLSEQKDSKLREIINDCSSEAKACQQSVHIRRKLASSILKSREDRIGLLKMEEEILQDIQVLRQQTSDARISLQEISSRKAVIQQDIATFKQKLSFIDKRGPELEAEKRVAAAARNFKEAGRIAAEAKALNSEKEELHAKLEKAATDLEVIEKDITATTDKIQECEGLIILKEKESAMTSYKRLRLDAAAARAELTAATETDDSEEVEVLRKEAEAAESKAMELKTCYDLELDDNEIMFQPVVPIVFITNSTGQHLLEIASSFGLSP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.964047 | 9.704161 | 5.717216 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40450 | RBH | 1.413736 | 0.938210 | 1.146399 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022120 | RBH | 0.207707 | 4.251297 | 2.646562 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022010 | RBH | 0.176460 | 0.304304 | 1.528219 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022030 | RBH | 0.200105 | 0.274473 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021910 | RBH | 1.272724 | 8.997602 | 7.647434 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0408500 | RBH | 5.5112675 | 9.786684 | 11.695397 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021790 | RBH | 0.079721 | 0.903612 | 0.876091 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021130 | RBH | 0.094008 | 0.111475 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021440 | RBH | 0.232291 | 5.533621 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021260 | RBH | 0.668294 | 4.420412 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022090 | RBH | 0.324201 | 0.651900 | 0.308465 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021470 | RBH | 0.100226 | 21.369511 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021600 | RBH | 0.343910 | 3.918656 | 1.647552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021760 | RBH | 0.252465 | 13.254252 | 3.275339 |
