Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0019430 | OGI:08068320 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:23715281-23717338 | ||||||||
| Gene Symbol | ZHD2, OsZHD2 | ||||||||||
| DNA seq | gagtaaaagagaggacgaggcttcattgaattcacataggctaaattctaaaaagtccccggccattgctatagcttctgcaagctctgcgtcctaacacatgggcagcaatgcggcatcactgctcgcgagatgtggaagacgagtaaatgcagcggatacagtgagatcgagaactcggaagaaaaatgcagcgaacatggtagctagagaaattggaatttcagagtagacaggtgaagcggacggatcatggacaagttggtgcccaggtctggaaattggaagcgagggagatcgatgtgaatgcaacagtgttgcagctcatatagttgcagccgacctttctgaatctttatctgccctagttgttagctagacgaactacaagtgctactgatgatgaagtgccaagcacaagaaatataggggaaaagaaatgatgaaacaaacaaaccgtgcagcaacccaaatccccaggaaggaaatttcaattgcaacacaaaagtactacattcccaagatctaaatcgatcggcaaatcgccatccatgtcctcttccttcccaacaccaaacgtcgtcgtcatcatctactaggaaacaacaacgacggcaaccacaagcccaaagaacccaaccacaatggaataaaataacgaaaaagaaacaaggaaggatgcaaaagcagcagcagcagcaaccaccacctcccctaaaaccaacaagaacagcttgctcgctacgaacctagctaagcttctactcaggtgaggtaaaagaaggcaaagaaaaaggctaattagccgcgggtaaggaggtagtagaagtagatggagatggtgatgcatgcagttgcagttgcagtgcaggtacctagcaccgggaggagatgagctgagctgagcttgcttggcttagcttagctatggcgccttcttgcccagggtgtgcttgttgttgtgcatccaaaccttgaggacatggcgcttgacgcagacctcctcgcagaactgctgcacggcggcctcgtcgtgcttctggatgcgccacccgagccgctccgcgaaggcgagcatcttgtccttctgctcctgcgtgaactttgtgcggaaccgcttcttgccggagccggagccggaggggccggcggagccgagggacatgccgaccatggggccaatcaccatggggccgaccatcccggacatgtcgtcgccctcgtcgcgtcccgagtgggaggtggacggcagcgcgaggggccgctgcgggtagccgcccgctgcggcggcggccgcggccgccgccgcggccgccatctggtgctgctggtggtggaggtaccctgccggggtgcggtagtagggggagaactggtggtgcggcgaggcgccgtaggccgagatggcggcgggggacacggcggaaggctcggccggcccgacgcccgtgggggactccgactccttgcggtggaagttacggtggcagccgcaggcggcgcagcggagcgcgtcgatggagccctcctcgccggaagccatgaactcgccgcagccgtccacggcgtgcccgccgatgccgacggcgtggttcttgaggcactcccgatacctcgcccctcctcctccaccaccaccaccaccaccaccgccgccgccgactccacctcccggcttgggcaccccgccaccgccacctccaagcccgggctgcatcggcgcgtcgtagcccgagctcagaggcatcggaggcatctcctcgtcgccgtcaccctcgtcatggtcgtcgaaatccatggccgccgaccgaccgaccggccggccaccccctttcttttccctcccttttggatttctcgggtgtgttcttggcgagcttaagaaaagcttagggagtaatagaggaaggagacgaggctatgagcaagtataggggagtgtgaaactgtggacacacacctgctaattttgacgcgccgctgcaagcagcagctgctgctgttgctgctgtacccttcagctagtaggagtagctagctagatgatgcaataaactc
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| CDS seq | atggatttcgacgaccatgacgagggtgacggcgacgaggagatgcctccgatgcctctgagctcgggctacgacgcgccgatgcagcccgggcttggaggtggcggtggcggggtgcccaagccgggaggtggagtcggcggcggcggtggtggtggtggtggtggtggaggaggaggggcgaggtatcgggagtgcctcaagaaccacgccgtcggcatcggcgggcacgccgtggacggctgcggcgagttcatggcttccggcgaggagggctccatcgacgcgctccgctgcgccgcctgcggctgccaccgtaacttccaccgcaaggagtcggagtcccccacgggcgtcgggccggccgagccttccgccgtgtcccccgccgccatctcggcctacggcgcctcgccgcaccaccagttctccccctactaccgcaccccggcagggtacctccaccaccagcagcaccagatggcggccgcggcggcggccgcggccgccgccgcagcgggcggctacccgcagcggcccctcgcgctgccgtccacctcccactcgggacgcgacgagggcgacgacatgtccgggatggtcggccccatggtgattggccccatggtcggcatgtccctcggctccgccggcccctccggctccggctccggcaagaagcggttccgcacaaagttcacgcaggagcagaaggacaagatgctcgccttcgcggagcggctcgggtggcgcatccagaagcacgacgaggccgccgtgcagcagttctgcgaggaggtctgcgtcaagcgccatgtcctcaaggtttggatgcacaacaacaagcacaccctgggcaagaaggcgccatag
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| Protein seq | MDFDDHDEGDGDEEMPPMPLSSGYDAPMQPGLGGGGGGVPKPGGGVGGGGGGGGGGGGGGARYRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEPSAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQHQMAAAAAAAAAAAAGGYPQRPLALPSTSHSGRDEGDDMSGMVGPMVIGPMVGMSLGSAGPSGSGSGKKRFRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVQQFCEEVCVKRHVLKVWMHNNKHTLGKKAP |
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| Function | Zinc-finger homeodomain protein 2 [UniProtKB/Swiss-Prot:Q6ZB90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0019430 | OsCMeo_08g0019430.01 | Chr08 | 23715281 | 23717338 | - | NAM | ||
| CDS seq | atggatttcgacgaccatgacgagggtgacggcgacgaggagatgcctccgatgcctctgagctcgggctacgacgcgccgatgcagcccgggcttggaggtggcggtggcggggtgcccaagccgggaggtggagtcggcggcggcggtggtggtggtggtggtggtggaggaggaggggcgaggtatcgggagtgcctcaagaaccacgccgtcggcatcggcgggcacgccgtggacggctgcggcgagttcatggcttccggcgaggagggctccatcgacgcgctccgctgcgccgcctgcggctgccaccgtaacttccaccgcaaggagtcggagtcccccacgggcgtcgggccggccgagccttccgccgtgtcccccgccgccatctcggcctacggcgcctcgccgcaccaccagttctccccctactaccgcaccccggcagggtacctccaccaccagcagcaccagatggcggccgcggcggcggccgcggccgccgccgcagcgggcggctacccgcagcggcccctcgcgctgccgtccacctcccactcgggacgcgacgagggcgacgacatgtccgggatggtcggccccatggtgattggccccatggtcggcatgtccctcggctccgccggcccctccggctccggctccggcaagaagcggttccgcacaaagttcacgcaggagcagaaggacaagatgctcgccttcgcggagcggctcgggtggcgcatccagaagcacgacgaggccgccgtgcagcagttctgcgaggaggtctgcgtcaagcgccatgtcctcaaggtttggatgcacaacaacaagcacaccctgggcaagaaggcgccatag
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| Protein seq | MDFDDHDEGDGDEEMPPMPLSSGYDAPMQPGLGGGGGGVPKPGGGVGGGGGGGGGGGGGGARYRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESESPTGVGPAEPSAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQHQMAAAAAAAAAAAAGGYPQRPLALPSTSHSGRDEGDDMSGMVGPMVIGPMVGMSLGSAGPSGSGSGKKRFRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVQQFCEEVCVKRHVLKVWMHNNKHTLGKKAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.965156 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0479400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g37400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0479400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0019610 | RBH | 0.0 | 0.0 | 0.593885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0019530 | RBH | 0.0 | 0.0 | 0.155024 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0019630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0019490 | RBH | 0.0 | 0.0 | 1.098890 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0376900 | RBH | 1.1713145 | 0.049459 | 4.5865905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0019410 | RBH | 0.0 | 0.0 | 0.057110 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0396600 | RBH | 1.1503905 | 0 | 25.6511595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0018720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0018840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0019680 | RBH | 0.0 | 0.0 | 0.077784 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019230 | RBH | 0.0 | 0.0 | 1.163558 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019380 | RBH | 0.0 | 0.0 | 0.760790 |
