Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0015180 | OGI:08056590 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:19288583-19289410 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaggaattaaggatcgcgcctactgccagttcaatcaagaacgtcggatcaccgaagatgaccccgatgatggcacgtatgacaccggcaacgatcgtcaagaaccgctccaagccaccgccaccgcccgccgccgtcgccctcctcctggccggcggcaggctccgcagcacgccctccatcaccggcgagctcatcacctgcacgctccggacgtcggcggcggcgccgtactgcgtctgcatgcgcttgaggcacgcgacgtgcaggtacagcgcctcgccgtcgccgtcggcgtacgagtacgaccggtagaaccagaacctgcggccgccgccgcacctcatctccccgcactcggcgcaccgcctcgacgcctccttccggagctcgaagacgcggccgccgccgacggcgaaccgcgccggcagggacgcgcacgtcgggtggaggtcgaggccgaggccgccgtcgcctcggccggagcagtggtacaccaggccgcgcgcatgcacgccctcgccgcacgcgtcgcagatcctccgttcaccagcggcggtcggcggcgggggctccgggaggaggacgaacgtgcagcccgggaagaggcggtgctctctggtcgccggcgcgagggcgcagcacgtgtgcaggtcgaagttgcacgtctcgcgctcgcaccgatacctcgggccgtcgccgtgctccatgcatccgtcgcacttgaacttctggccgccggttcgcacaagcttcagtttgtgacccggccggtgagcagggtggaaggagatcgttgccggagtatctgggaacaggttagtcat
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| CDS seq | atgactaacctgttcccagatactccggcaacgatctccttccaccctgctcaccggccgggtcacaaactgaagcttgtgcgaaccggcggccagaagttcaagtgcgacggatgcatggagcacggcgacggcccgaggtatcggtgcgagcgcgagacgtgcaacttcgacctgcacacgtgctgcgccctcgcgccggcgaccagagagcaccgcctcttcccgggctgcacgttcgtcctcctcccggagcccccgccgccgaccgccgctggtgaacggaggatctgcgacgcgtgcggcgagggcgtgcatgcgcgcggcctggtgtaccactgctccggccgaggcgacggcggcctcggcctcgacctccacccgacgtgcgcgtccctgccggcgcggttcgccgtcggcggcggccgcgtcttcgagctccggaaggaggcgtcgaggcggtgcgccgagtgcggggagatgaggtgcggcggcggccgcaggttctggttctaccggtcgtactcgtacgccgacggcgacggcgaggcgctgtacctgcacgtcgcgtgcctcaagcgcatgcagacgcagtacggcgccgccgccgacgtccggagcgtgcaggtgatgagctcgccggtgatggagggcgtgctgcggagcctgccgccggccaggaggagggcgacggcggcgggcggtggcggtggcttggagcggttcttgacgatcgttgccggtgtcatacgtgccatcatcggggtcatcttcggtgatccgacgttcttgattgaactggcagtaggcgcgatccttaattcctaa
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| Protein seq | MTNLFPDTPATISFHPAHRPGHKLKLVRTGGQKFKCDGCMEHGDGPRYRCERETCNFDLHTCCALAPATREHRLFPGCTFVLLPEPPPPTAAGERRICDACGEGVHARGLVYHCSGRGDGGLGLDLHPTCASLPARFAVGGGRVFELRKEASRRCAECGEMRCGGGRRFWFYRSYSYADGDGEALYLHVACLKRMQTQYGAAADVRSVQVMSSPVMEGVLRSLPPARRRATAAGGGGGLERFLTIVAGVIRAIIGVIFGDPTFLIELAVGAILNS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0015180 | OsCMeo_08g0015180.01 | Chr08 | 19288583 | 19289410 | - | NAM | ||
| CDS seq | atgactaacctgttcccagatactccggcaacgatctccttccaccctgctcaccggccgggtcacaaactgaagcttgtgcgaaccggcggccagaagttcaagtgcgacggatgcatggagcacggcgacggcccgaggtatcggtgcgagcgcgagacgtgcaacttcgacctgcacacgtgctgcgccctcgcgccggcgaccagagagcaccgcctcttcccgggctgcacgttcgtcctcctcccggagcccccgccgccgaccgccgctggtgaacggaggatctgcgacgcgtgcggcgagggcgtgcatgcgcgcggcctggtgtaccactgctccggccgaggcgacggcggcctcggcctcgacctccacccgacgtgcgcgtccctgccggcgcggttcgccgtcggcggcggccgcgtcttcgagctccggaaggaggcgtcgaggcggtgcgccgagtgcggggagatgaggtgcggcggcggccgcaggttctggttctaccggtcgtactcgtacgccgacggcgacggcgaggcgctgtacctgcacgtcgcgtgcctcaagcgcatgcagacgcagtacggcgccgccgccgacgtccggagcgtgcaggtgatgagctcgccggtgatggagggcgtgctgcggagcctgccgccggccaggaggagggcgacggcggcgggcggtggcggtggcttggagcggttcttgacgatcgttgccggtgtcatacgtgccatcatcggggtcatcttcggtgatccgacgttcttgattgaactggcagtaggcgcgatccttaattcctaa
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| Protein seq | MTNLFPDTPATISFHPAHRPGHKLKLVRTGGQKFKCDGCMEHGDGPRYRCERETCNFDLHTCCALAPATREHRLFPGCTFVLLPEPPPPTAAGERRICDACGEGVHARGLVYHCSGRGDGGLGLDLHPTCASLPARFAVGGGRVFELRKEASRRCAECGEMRCGGGRRFWFYRSYSYADGDGEALYLHVACLKRMQTQYGAAADVRSVQVMSSPVMEGVLRSLPPARRRATAAGGGGGLERFLTIVAGVIRAIIGVIFGDPTFLIELAVGAILNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.418352 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0404500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0404500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015250 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007890 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015480 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0306000 | SBH | 0.082391 | 2.660441 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015310 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0328300 | SBH | 0.151841 | 5.5338125 | 0.0471165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015520 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014940 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015170 | RBH | 0.0 | 0.901099 | 0.0 |
