Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0015160 | OGI:08056450 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:19199769-19205065 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatcaacaatattttcttttaacagtgttatgaaatacaatagtatccattaacaacaaataaacaaacattataagctatccgtctcaagtatatgatactttcgcatttaaataactgtgctgtatacatctcattgtgtacataaataactcctatgtgttgtttagctaccaggacttgtgtagaatatactatgttgacttcttaggtatttctcgtgctttggcccagagaaaaaggtagagcccgacaatcaccaatgctgtgcctagaagactgcacattgagaataggagaacaattacatctattgctgccaatggtcaaaaaataaactgtactgcaaatacacttcatatagtttcgaggaatacaaagtaaaacagtaaatttcacaaaaccacatgctttatggtctgcattataaaaaaccatagatgtttgacatttggcacttaaccatagcagttatgatattagtttttcataaaagcacactattaataaaacttagctattcttatgcacatggtcagtgtggctaatcattggtggaatagttcacataagaatggctaaatttgtgtaagagtttggttttgtaaatcattaataccataattgttgtggttatgtgcagtcctaaactcttgtggtttttcataacttgcaccataacacatgtggttgtgtgaaattattccaagagtcatctatgttatactagtatcttttgtgtgcttcacaatttttgtaaacgtaaaagtgaattgaaaaggacaagctgcaattgttgaaagtgcttgcactattcacatcaccgacttctttgattctccattttgccgttgtttgtactgattattatgtataatatttcttggaaatatgcataagaaatttccaaggtttactttccttttgctatgtaaacttagtcttattcagtttggcaaaggattacatttgccacattaactgatcaaatatattttccttttgcaacattaaacatgcatgatagacacaaacgaaagcaactgaccttccaattgtaatatcatttcctagaaggactgaatccaacacaacagtgaagacgactgataatggactgaacattgtgggataggttgggcctcgcttagttattgcccatgaattcaatatatatttcccggctgttgcaagtgctccctacaccaaaatatttttcatgtcaaatccctaagacagtcccctacgcattccctaaaatttcatctttcccaaaataataccataactctaaacttgttagttaatacaattcaagttttagtggacaccaaaaaacagaaaacaaaatgttctttgcaaatggatttcttattttaagcatcactgaacaccgagaaaaaaaacttattttataaaatatatttattgttctagctcactaaattaatttcaagggttaggaaggttgaaggtataccgtgtacacgatggtaacaaggttgagattccatcctagctcccatgcactcttgtctctccttaatatgattccgacaaatgcggtttgaaatactccaaccaagcatgtcaccatggacgaccaatatttgtatggatacactttgagaatctttgactgtgacaatagttataagatgtcattgtatggggataaaatttactgtaatatatagatatatgagaatttttatgggcattaagaaattaagtaactcaaggtaccgagttttacactagaaaataccttctcaaagaagtaaaaattaccctaaatatatatactttattagaagcaatgtttatgattacctgaataagaaaccagcaagcaaaggtgaagctgctgccaaccaatagaattgttcctcttagctgattggttgctgacctgtgttcattttggtgttgtatgatagaatcccagagatgcaatgacttgcctttgtaaaggcttataagcattgtccctccaatggaaagcagtatgctcgctatcttcagtactccaggtatgcttctaagtttgaatgcctccaacctataatcatgttcatacatatgtttcaatgagatggaacattaattttgcgacacgatttgaattttacccttatgacttttttttttgcatgatatggaactgttgttgttggaacctatagttaccaagtagtacatcgtatacaacaactagttgagtgagactcttacctgaacataagtgagaggatgaaggtgaacaggggagttatattaagaaagataacggaataggatgatgtggtatccttgaggccatagtagtagaggctcattggcacagagtacctgcatattttggcatgtcagaagaaaaactaaaaataatttgtctcaggaagtaataaatagccatcaagaaattggttattgagtataatcaaattgatggttttttagtgtttatccttgcttgggttgatgttatttccccttctctatcaataaataaggcaatgtcttcatctttgccttttctatttattttaaataaaggtggctctatatgcagtagagtctttcaccaaattgctactattatcagtaaataaatatcttattattggaggctaagtttttatttatcacaacaactctgaacagactaatggtctatatttgtatcattgtttttgaaaaaaaaaatctttcatcaaagtttatgctgttatccttctaaggaagctcttagcagatttatgagttcatttttgttgttgaagcacatatctagagtttgcagctttgtgcaacagatccttctaacaaattatgtgcttgtgtactccctctgttttaaaatatagtaacatttgtagtaaggtaactattttaagaaggagcgaatacaaccaaaatcagaaggtgtatagtcaaaacattttaatgttaataaatgtgtaattattttcttctgtgctttgccagaactattttgagagaaatatcagagtatatataatcaagaatattatcaacctctgctttaaaatatatgcttttgtgttacataatggttttgcaaagatgaattacatgtgcaataggctgcctggatgcacatagacagagggaaacaaacaaaaatctaaaaatttatatatgcttttagtgttacataattgttctgtaaaattgaatcctatgtgcaaaagcctgtctgaatgcacatgtttagatggaaatagagggcaatccgaagtccaacacagacctggaactggaaggacaagtgaagtcaatcttttccataagggaagtgatgaagttaagaaccaagaagtgagcactctgttctaatgctaagttagtgtaaatttatccttctccctccaatttacttgggtttgctatcgttgcattggagaaaatttcatatctagagttgttaggaggtggagctggcatatttatacaatcatgcatgtttttgaaatatcatcatatattaatatcatgctgcggtgcttcctcagtagtctcaaaccaattatttttttttaaaaaatcctccaaataactaattatctaaaattgtctggtctacacagctagcttattggtatattttacaattttctctcacgtaggtgagttgcaacctacaagccgtacaaaggacaggtatttttcgacgttaactcactgttacgaatagtattcaaaccatactctctttttatgaaaaaacgataggaagagtaataatagaggtgagacgtgtcaacgaatggatcttcatgtactatcgatcgaatcaacccacacaataaataaataataggaaaaagtccaaatacatccataaactttagatggaaatccgtctagcaccctaaactttaaaatcagttatccaaccccccgaacttttgccatatcatccatatcaccccctaaggtggttttggatgatggttttgtatattttggaagcttaaacgaacaattttaaataagtaatataacacatttgcatatcatcagttgcaactcatcaatttattcttattcagtaatattatactattatcatgtaggtacttgtttgtgagagctcataagtagaaaaataaatatttaagtcaaaattttactctaaagagtatgatatgtgatcaaactcatccaacttatatataaattagataaaaaccccactatgcaaaaccatcttaggggttatataaactgtattataaagtttagggggttgaatgtccggttttaaagtttagggtgctaaacgaacttcagttccaagtttaggggttatttggacttgttcctaaataataagtataattatggacagtttgactgaatttgaaggttcagatacacatgtcgtacgtacccaatgaacgcattgagaaagatccatccgaatgcaccccaatccatgtccctccacttgcctctacacaaaaccaaattagcagcatattaaattttcaccatgaaacccgattttagaatgcatacagccgctgctaattacttttcttaattacaatcacattcagtattcttagcgggtgattaattccagggttatccatttattcgatcagaagtttacatgtggtgttattcattattgaatcaattgattcgcaacttaaactagacatacattttataattattgacattacaaaatgatttttcaataaatttagaaaagagtcactaatggatgaccataaattatctcattccgatatcctagttttgtaaaatgtttgtccgaagagaaaaaaatattctgaagatgcgaaatctgcaaatatacacgccaagctgatcataaaaacacggataatttcatcatcctgagaaattatcaggatgtacatattttctggtgtaaaatttggtaccttcagatttaggtaatatttagtgtaatatttaggtacctcgaggtactttcttaagaaacgtaaaatttctttaaaacacacacaaataaaaactggagaagattaaaacctctcgaagatgagcgcgaaggggaggaggaagacgacggcgaagaagctgttgtacgcaagcagcacgaagatcaatatgccactgccgatggacaccttggacagcaggatctgccccgtgatgaacagctgcaccagcaccatcgacaccggcgtcttccacccggcccccgccgccgcggcggcggtggcggccgtggatcctcctcccatagcgcccgcgccggtgatgtccat
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| CDS seq | atggacatcaccggcgcgggcgctatgggaggaggatccacggccgccaccgccgccgcggcggcgggggccgggtggaagacgccggtgtcgatggtgctggtgcagctgttcatcacggggcagatcctgctgtccaaggtgtccatcggcagtggcatattgatcttcgtgctgcttgcaggcaagtggagggacatggattggggtgcattcggatggatctttctcaatgcgttcattgggtactctgtgccaatgagcctctactactatggcctcaaggataccacatcatcctattccgttatctttcttaatataactcccctgttcaccttcatcctctcacttatgttcaggttggaggcattcaaacttagaagcatacctggagtactgaagatagcgagcatactgctttccattggagggacaatgcttataagcctttacaaaggcaagtcattgcatctctgggattctatcatacaacaccaaaatgaacacaggagagacaagagtgcatgggagctaggatggaatctcaaccttgttaccatcgtgtacacgggagcacttgcaacagccgggaaatatatattgaattcatgggcaataactaagcgaggcccaacctatcccacaatgttcagtccattatcagtcgtcttcactgttgtgttggattcagtccttctaggaaatgatattacaattggaagtcttctaggcacagcattggtgattgtcgggctctacctttttctctgggccaaagcacgagaaatacctaagaagtcaacatag
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| Protein seq | MDITGAGAMGGGSTAATAAAAAGAGWKTPVSMVLVQLFITGQILLSKVSIGSGILIFVLLAGKWRDMDWGAFGWIFLNAFIGYSVPMSLYYYGLKDTTSSYSVIFLNITPLFTFILSLMFRLEAFKLRSIPGVLKIASILLSIGGTMLISLYKGKSLHLWDSIIQHQNEHRRDKSAWELGWNLNLVTIVYTGALATAGKYILNSWAITKRGPTYPTMFSPLSVVFTVVLDSVLLGNDITIGSLLGTALVIVGLYLFLWAKAREIPKKST |
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| Function | WAT1-related protein At1g44800 [UniProtKB/Swiss-Prot:Q9LPF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0015160 | OsCMeo_08g0015160.01 | Chr08 | 19199769 | 19205065 | - | NAM | ||
| CDS seq | atggacatcaccggcgcgggcgctatgggaggaggatccacggccgccaccgccgccgcggcggcgggggccgggtggaagacgccggtgtcgatggtgctggtgcagctgttcatcacggggcagatcctgctgtccaaggtgtccatcggcagtggcatattgatcttcgtgctgcttgcaggcaagtggagggacatggattggggtgcattcggatggatctttctcaatgcgttcattgggtactctgtgccaatgagcctctactactatggcctcaaggataccacatcatcctattccgttatctttcttaatataactcccctgttcaccttcatcctctcacttatgttcaggttggaggcattcaaacttagaagcatacctggagtactgaagatagcgagcatactgctttccattggagggacaatgcttataagcctttacaaaggcaagtcattgcatctctgggattctatcatacaacaccaaaatgaacacaggagagacaagagtgcatgggagctaggatggaatctcaaccttgttaccatcgtgtacacgggagcacttgcaacagccgggaaatatatattgaattcatgggcaataactaagcgaggcccaacctatcccacaatgttcagtccattatcagtcgtcttcactgttgtgttggattcagtccttctaggaaatgatattacaattggaagtcttctaggcacagcattggtgattgtcgggctctacctttttctctgggccaaagcacgagaaatacctaagaagtcaacatag
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| Protein seq | MDITGAGAMGGGSTAATAAAAAGAGWKTPVSMVLVQLFITGQILLSKVSIGSGILIFVLLAGKWRDMDWGAFGWIFLNAFIGYSVPMSLYYYGLKDTTSSYSVIFLNITPLFTFILSLMFRLEAFKLRSIPGVLKIASILLSIGGTMLISLYKGKSLHLWDSIIQHQNEHRRDKSAWELGWNLNLVTIVYTGALATAGKYILNSWAITKRGPTYPTMFSPLSVVFTVVLDSVLLGNDITIGSLLGTALVIVGLYLFLWAKAREIPKKST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.987870 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0402800 | RBH | 0.000000 | 0.168279 | 1.529638 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31130 | RBH | 0.000000 | 0.113182 | 0.393759 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0402800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015360 | RBH | 0.0 | 0.0 | 6.676266 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015230 | RBH | 0.0 | 0.0 | 1.949098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015460 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015260 | RBH | 2.066561 | 0.0 | 21.266628 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0304300 | RBH | 0.034269 | 0.0129155 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015290 | RBH | 0.0 | 0.0 | 1.641330 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0326400 | RBH | 0.0815055 | 0.0175125 | 0.02535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015500 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015000 | RBH | 0.0 | 0.0 | 1.502306 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015150 | RBH | 0.0 | 0.0 | 13.698484 |
