Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0009210 | OGI:08027580 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:9638939-9642326 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgcaaagctcttccaccgcgcccgcgcgcatctgcagcataaccatagtcgccgcgcaccgcccaggctctaccaccgtcaaatcgacgaccatagaggaaaggcggaagaaaagagggacaggttggttcagacttcagagtttctcttctttttttttttcgaagaacttgTCCAGAGAAATTGATAGCATATTCCTCACAGGCTAACAATACATCTCGTCACCGAGGTAGGTAATCTAGCATTGCTTCAGAAAGAGAGGGTAGGGGGGGGGGGGATTGAGTAACCTTTGCATTTTCTTAATGTCTTTGAATAACATTGAGTATATATAATTTTTTTTGTGCGATTCTCCCAATGAGTTGACTTCACTGTAACTGAACTGGCGTAGGATCTGGATGAGAGCAATTCCTTATTAGCAATTCCATATCTATATGAGCACTTGGCAGTTGGCAAGTTACAAGGATCCTCTTTTCCCTTCTTGCTGGAAAAAACGATCCAAaaagtccaaatcaaccagccaaagtttgcaggattgccagtttgatcaagcaacggaggtagaggtattttcttttcttattcgcacttgcgtttgatgtatgatagcagcataattttaccttttggagtcgatggatggactatgtgttggtgaaagacttagattatgtagaataatttttttttaaaaaaagaaatgattcagtggaaagaaattgctttgcttactgatttttgaatatcatcaacagattcagtggaggtttagtcacccatttattcaatctaTAACctctttttttgTttatgtacatgtgaccatttgcattataactttcTtcgtttatctatataattgacccttacaagagaactgattttgAactgcctacTgctgAaaaacagtgacaagagaatggcagagactgcaattcttctagccataaagaagataagTatagctgtggcaggagaaatgttaagcctgccaaGacccattattgcaaaaaaatctgaactagtcgtagcacttccgactaacatggaattGgtgaaggatgaacttgagattatAaatgcatttctcaagaaagttaaaactcgggattgccgtgataatgtcttggaaacttggataacccaagtcaggaggttggcatatgacattgaagatattgtggatcagttcatatatgttgttggtgaacaccaGggtaaGGgattctggggtaatttaaagaaatttgtcaagaaaccagagtctttgttttcattggatagggttgctactgaggttgaaaaggtaaaactgaagctcaaggaactgtcaagtagGAgagaccgctgggtacaatcaacgatttgcagacccgatgctgagataccaaactatgacgatgaacaaggagtgtaccaattcaggcatagccaagtaccagattatgacgacaatgagcttgtaggtgttgatgaatacagagaaaccctcacaaagctattgtactctgaacattgttctctgcgcattgttgctgtttgtggtatggGTggcttgggcaaaagttgtcttgtttacaatgtcttcaagagagagcggtctcattttgattgctcttcatggatttctgtatcacagtcatgcaaaatggatgatatcttcagaaatAtgttgaatcaactacttggtgacAgcagcgaagtaaactacgacacatcaaggatgggcattgaggtattgaaagaagagttgaagagatttctggaggacaagagttacataattgcattagatgatatatggagagctccagttcttttggAaattagagataccctttttaatagtggcaagggAagtagattaatcattacaactagaatcgatgaagtagctgcaatcgcTgaagatgcctgcaagatcaagcttgagcctctaagcaagtatgatgcAtggattttattttgcagaaaggtattctggaaaacagaaaatcatgcttgctccccggaattgcacaagtggggtgaaaagatagtcaataaatgtgaaggtttgccattagctattgttgcattggggagcttactatcactaagagataaaacagaggcagtttggAaatgtttccatagccaaataatttgggagttgcagaacaatccagacataagtcatgtggagtggatcttgaatttAagttacaggcatctgccaaatcatttgcagaactgtttcttatactgtgcgatgttcccggaagatcatctccttcggaggaagaagctgatcagattgtggaTtgcagaaggatttgttgaaCaaagaggatcaatcagcttagaggaggttgctgAaagttatctcAtagaactcgtccatcggagcatgcttcaagtggtatagaggaacagttttggcaggattcgacGtttccggatgcatgatcttgtacgtgaactagccattaaaatgtctgaaaaagagagtttcagttcacttcatgatgatacttctggagttgtacaggtagtgtcagattctcgtcgtgtgtcgctgatccgatgcaagagtgaaatcacatcaaacctagcttcatcgaggcttcacacttttttggtttttgacacaaccatgcttcaatgttcAtGgtcttgttttgttccacccaaatctaaatatcttgcagtgctggacttgtcaggcttgcccattgaggctatcagcAattcgaTtggggaattgttcaatcttaaatatttgtgcctcaatgatactaacctgaagtcactcccaaaaactatcaccagacttcacaatttagagaccttaagtcttgaaaggactcaggtaacaagttttccagaggggtttgcAaaattgcagaaactgaggcatgtacttgtctggaaattactgtacaatgagcactcaagtttcagtaactccttgggtatgggaacaattgaaggtctttggaatttgaaggaattgcttactttggatgaaattcgggcaaatagaaaatttgtcagcaggctagggtatttggcccaactaaggagcctttacatttcggacgtaaggagtaactattgctcagaattgtgttcttcactatcaaaaatgcaacacctcttgagattacatgtgaaagcaagcaatcaagatgaattgctcagactggaatctttgcaattgcctcctgaactccaaacacttcagttgacagggaagttgacaggaggagtgctgaaatctccattattgttctcagctaatgtaaattCccttgtcagactgagtTTATGCtgGtgcgatcTtacagaagacccaatcccatatctctccaagctatcaaatttaacaagTttacatcttcggagAaca
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| CDS seq | atggcagagactgcaattcttctagccataaagaagataagTatagctgtggcaggagaaatgttaagcctgccaaGacccattattgcaaaaaaatctgaactagtcgtagcacttccgactaacatggaattGgtgaaggatgaacttgagattatAaatgcatttctcaagaaagttaaaactcgggattgccgtgataatgtcttggaaacttggataacccaagtcaggaggttggcatatgacattgaagatattgtggatcagttcatatatgttgttggtgaacaccaGggtaaGGgattctggggtaatttaaagaaatttgtcaagaaaccagagtctttgttttcattggatagggttgctactgaggttgaaaaggtaaaactgaagctcaaggaactgtcaagtagGAgagaccgctgggtacaatcaacgatttgcagacccgatgctgagataccaaactatgacgatgaacaaggagtgtaccaattcaggcatagccaagtaccagattatgacgacaatgagcttgtaggtgttgatgaatacagagaaaccctcacaaagctattgtactctgaacattgttctctgcgcattgttgctgtttgtggtatggGTggcttgggcaaaagttgtcttgtttacaatgtcttcaagagagagcggtctcattttgattgctcttcatggatttctgtatcacagtcatgcaaaatggatgatatcttcagaaatAtgttgaatcaactacttggtgacAgcagcgaagtaaactacgacacatcaaggatgggcattgaggtattgaaagaagagttgaagagatttctggaggacaagagttacataattgcattagatgatatatggagagctccagttcttttggAaattagagataccctttttaatagtggcaagggAagtagattaatcattacaactagaatcgatgaagtagctgcaatcgcTgaagatgcctgcaagatcaagcttgagcctctaagcaagtatgatgcAtggattttattttgcagaaaggtattctggaaaacagaaaatcatgcttgctccccggaattgcacaagtggggtgaaaagatagtcaataaatgtgaaggtttgccattagctattgttgcattggggagcttactatcactaagagataaaacagaggcagtttggAaatgtttccatagccaaataatttgggagttgcagaacaatccagacataagtcatgtggagtggatcttgaatttAagttacaggcatctgccaaatcatttgcagaactgtttcttatactgtgcgatgttcccggaagatcatctccttcggaggaagaagctgatcagattgtggaTtgcagaaggatttgttgaaCaaagaggatcaatcagcttagaggaggttgctgAaagttatctcAtagaactcgtccatcggagcatgcttcaagtggtatag
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| Protein seq | MAETAILLAIKKISIAVAGEMLSLPRPIIAKKSELVVALPTNMELVKDELEIINAFLKKVKTRDCRDNVLETWITQVRRLAYDIEDIVDQFIYVVGEHQGKGFWGNLKKFVKKPESLFSLDRVATEVEKVKLKLKELSSRRDRWVQSTICRPDAEIPNYDDEQGVYQFRHSQVPDYDDNELVGVDEYRETLTKLLYSEHCSLRIVAVCGMGGLGKSCLVYNVFKRERSHFDCSSWISVSQSCKMDDIFRNMLNQLLGDSSEVNYDTSRMGIEVLKEELKRFLEDKSYIIALDDIWRAPVLLEIRDTLFNSGKGSRLIITTRIDEVAAIAEDACKIKLEPLSKYDAWILFCRKVFWKTENHACSPELHKWGEKIVNKCEGLPLAIVALGSLLSLRDKTEAVWKCFHSQIIWELQNNPDISHVEWILNLSYRHLPNHLQNCFLYCAMFPEDHLLRRKKLIRLWIAEGFVEQRGSISLEEVAESYLIELVHRSMLQVV |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0009210 | OsCMeo_08g0009210.01 | Chr08 | 9638939 | 9642326 | + | NAM | ||
| CDS seq | atggcagagactgcaattcttctagccataaagaagataagTatagctgtggcaggagaaatgttaagcctgccaaGacccattattgcaaaaaaatctgaactagtcgtagcacttccgactaacatggaattGgtgaaggatgaacttgagattatAaatgcatttctcaagaaagttaaaactcgggattgccgtgataatgtcttggaaacttggataacccaagtcaggaggttggcatatgacattgaagatattgtggatcagttcatatatgttgttggtgaacaccaGggtaaGGgattctggggtaatttaaagaaatttgtcaagaaaccagagtctttgttttcattggatagggttgctactgaggttgaaaaggtaaaactgaagctcaaggaactgtcaagtagGAgagaccgctgggtacaatcaacgatttgcagacccgatgctgagataccaaactatgacgatgaacaaggagtgtaccaattcaggcatagccaagtaccagattatgacgacaatgagcttgtaggtgttgatgaatacagagaaaccctcacaaagctattgtactctgaacattgttctctgcgcattgttgctgtttgtggtatggGTggcttgggcaaaagttgtcttgtttacaatgtcttcaagagagagcggtctcattttgattgctcttcatggatttctgtatcacagtcatgcaaaatggatgatatcttcagaaatAtgttgaatcaactacttggtgacAgcagcgaagtaaactacgacacatcaaggatgggcattgaggtattgaaagaagagttgaagagatttctggaggacaagagttacataattgcattagatgatatatggagagctccagttcttttggAaattagagataccctttttaatagtggcaagggAagtagattaatcattacaactagaatcgatgaagtagctgcaatcgcTgaagatgcctgcaagatcaagcttgagcctctaagcaagtatgatgcAtggattttattttgcagaaaggtattctggaaaacagaaaatcatgcttgctccccggaattgcacaagtggggtgaaaagatagtcaataaatgtgaaggtttgccattagctattgttgcattggggagcttactatcactaagagataaaacagaggcagtttggAaatgtttccatagccaaataatttgggagttgcagaacaatccagacataagtcatgtggagtggatcttgaatttAagttacaggcatctgccaaatcatttgcagaactgtttcttatactgtgcgatgttcccggaagatcatctccttcggaggaagaagctgatcagattgtggaTtgcagaaggatttgttgaaCaaagaggatcaatcagcttagaggaggttgctgAaagttatctcAtagaactcgtccatcggagcatgcttcaagtggtatag
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| Protein seq | MAETAILLAIKKISIAVAGEMLSLPRPIIAKKSELVVALPTNMELVKDELEIINAFLKKVKTRDCRDNVLETWITQVRRLAYDIEDIVDQFIYVVGEHQGKGFWGNLKKFVKKPESLFSLDRVATEVEKVKLKLKELSSRRDRWVQSTICRPDAEIPNYDDEQGVYQFRHSQVPDYDDNELVGVDEYRETLTKLLYSEHCSLRIVAVCGMGGLGKSCLVYNVFKRERSHFDCSSWISVSQSCKMDDIFRNMLNQLLGDSSEVNYDTSRMGIEVLKEELKRFLEDKSYIIALDDIWRAPVLLEIRDTLFNSGKGSRLIITTRIDEVAAIAEDACKIKLEPLSKYDAWILFCRKVFWKTENHACSPELHKWGEKIVNKCEGLPLAIVALGSLLSLRDKTEAVWKCFHSQIIWELQNNPDISHVEWILNLSYRHLPNHLQNCFLYCAMFPEDHLLRRKKLIRLWIAEGFVEQRGSISLEEVAESYLIELVHRSMLQVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.170712 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0261000 | RBH | 0.151736 | 0.0 | 0.370861 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g16120 | RBH | 0.101821 | 0.0 | 0.094731 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0261000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008980 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0009200 | RBH | 1.092237 | 12.668548 | 0.412265 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009000 | RBH | 0.0 | 0.051861 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008950 | RBH | 0.0 | 0.028905 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0151800 | SBH | 0.0147425 | 0.046195 | 0.0046725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009020 | RBH | 0.0 | 0.253935 | 0.168813 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0148300 | RBH | 0 | 0.198873 | 0.2259205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0008560 | RBH | 0.0 | 0.045974 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008720 | RBH | 0.0 | 1.330136 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008950 | RBH | 0.214860 | 0.548821 | 0.251205 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008760 | RBH | 0.0 | 5.228905 | 0.940057 |
