Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0007960 | OGI:08023150 | 12/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:8065798-8067815 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttattccaataacataccgttaagtacgccacgaacaaaagaaggattttcgccggccgttctcttgacacggcgtctctccctattaacagaggccaccttagatggcacatcgagcaacgtcctttttcctgaagcatgtagacgtaaacatcgtagcaactggatcgcatgtttgtctatgcaaaattagatgggcacttactgctcacgataggaacattaggctgaggtgctatagctggtgtgggctgttcaaccccaataacactctctgtaccacttgctagtggctcttcggtagtttgagcagcagaaggctgctcagtaacacccaagacaggtgttttgaggtagcctaacaaccgcagggaaaacgatgtcagctggaatgggatgacccaaaaagatggtcaattttaataacaaagacgctaaccttgacctatcgcgaaatggcggcgttctcggctctctcgagccctctgtacccggcgcgcagattggggtgacacaaaacgggatgacatctaaccacacatatatagagcgatatgatattgcacgcgtgtgttgcaaacatatgtcagtacatagttctgaaaatgctaatagagaatcgcattactggaagtagaataaatgagatacagcaacccgacaaataatttaacagcaACacaaacaatcctattacacaagggcaatgcaaagggcaacccggaacaaaCaccaaatctcagaaaacgatagtagccgaaaacaacctaaaaaccacctacatccaaccaaaatgattaaggttgtgctcttctgccacaaaagcaaaccacactgagcagaactctctaaagagcgactcaaacctaaaacagtggaggtcatgtggtgctctcatatgagctaaacaggttgaagcagctatcgccaaatcaaccgcagacgtggctatctctctgtaagacaccatatatctgaaattgtagtcatgaacaacaaatccataaatggattgaaggaacctgacagcctccctagcagcaggttcgtgtgctgtctcgtacggctcgaatgcaacacaccaaaagaagcgacaccctctctggcctgaatgttccccgctcacaagcacaagctccactccagcaagaagaacaccatcactccccatttcccacaggtacgaaaccaacggcagctggcaatggctagccacagcgttcaacagcgacacaaaggacacaccgatggaagacacaccgagggatggcatactgtcaggaggctgcagcgcgaagcgtattagcgtgagaggagaaagactacaactgacaagagctaaagaaggaggcggaccaaacatgtaaagagtaaaggtacagcaatcggtcaacacagtcaaccagctcaactgccaatgtctacatggggcctatcttttttagtctgcctgtttcttaaaataaaggagagccgattttttatgggcactgtagaggattgccatgcgcacaaacGgcgaagcggaagaacaacatcagcaaagaaagaaagaggcaaggccatttcaagccacagcatgagaaagaacatgcaaagcagaacagaaagcaaaaccaggcattacctcagaagacaccgaagcagcagtaagcaagaacagagcgagcggacaaagcgaactgccccccgagtggcaactccagggaccagctcacgcacggcgccgcccccgaccatctactccagcgatcagctctgtcgttcgatcacgaagaaaatgtgttaaccgggaagcagcggccgcaaaacaatgaagagagagaacagaaagaagatcagattaccaggctaatttctccattggcaaacagcaagagctcaaagtaaacgtgagaggaggataagatggtatcgcccggcttgcttgacgcagtagagaaagcagcctttcctcgggacggggcgaagagagcatggggcgccgtgtgttctgatgcaagccagccgagcggcat
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| CDS seq | atgccgctcggctggcttgcatcagaacacacggcgccccatgctctcttcgccccgtcccgaggaaaggctgctttctctactgcgtcaagcaagccgggcgataccatcttatcctcctctcacgtttactttgagctcttgctgtttgccaatggagaaattagcctgcctcctgacagtatgccatccctcggtgtgtcttccatcggtgtgtcctttgtgtcgctgttgaacgctgtggctagccattgccagctgccgttggtttcgtacctgtgggaaatggggagtgatggtgttcttcttgctggagtggagcttgtgcttgtgagcggggaacattcaggccagagagggtgtcgcttcttttggtgtgttgcattcgagccgtacgagacagcacacgaacctgctgctagggaggctgtcaggttccttcaatccatttatggatttgttgttcatgactacaatttcagatatatggtgtcttacagagagatagccacgtctgcggttgatttggcgatagctgcttcaacctgtttagctcatatgagagcaccacatgacctccactgttttaggtttgagtcgctctttagagagttctgctcagtgtggtttgcttttgtggcagaagagcacaaccttaatcattttggctacctcaaaacacctgtcttgggtgttactgagcagccttctgctgctcaaactaccgaagagccactagcaagtggtacagagagtgttattggggttgaacagcccacaccagctatagcacctcagcctaatgttcctatcgtgagcagaaaaaggacgttgctcgatgtgccatctaaggtggcctctgttaatagggagagacgccgtgtcaagagaacggccggcgaaaatccttcttttgttcgtggcgtacttaacggtatgttattggaataa
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| Protein seq | MPLGWLASEHTAPHALFAPSRGKAAFSTASSKPGDTILSSSHVYFELLLFANGEISLPPDSMPSLGVSSIGVSFVSLLNAVASHCQLPLVSYLWEMGSDGVLLAGVELVLVSGEHSGQRGCRFFWCVAFEPYETAHEPAAREAVRFLQSIYGFVVHDYNFRYMVSYREIATSAVDLAIAASTCLAHMRAPHDLHCFRFESLFREFCSVWFAFVAEEHNLNHFGYLKTPVLGVTEQPSAAQTTEEPLASGTESVIGVEQPTPAIAPQPNVPIVSRKRTLLDVPSKVASVNRERRRVKRTAGENPSFVRGVLNGMLLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0007960 | OsCMeo_08g0007960.01 | Chr08 | 8065798 | 8067815 | - | NAM | ||
| CDS seq | atgccgctcggctggcttgcatcagaacacacggcgccccatgctctcttcgccccgtcccgaggaaaggctgctttctctactgcgtcaagcaagccgggcgataccatcttatcctcctctcacgtttactttgagctcttgctgtttgccaatggagaaattagcctgcctcctgacagtatgccatccctcggtgtgtcttccatcggtgtgtcctttgtgtcgctgttgaacgctgtggctagccattgccagctgccgttggtttcgtacctgtgggaaatggggagtgatggtgttcttcttgctggagtggagcttgtgcttgtgagcggggaacattcaggccagagagggtgtcgcttcttttggtgtgttgcattcgagccgtacgagacagcacacgaacctgctgctagggaggctgtcaggttccttcaatccatttatggatttgttgttcatgactacaatttcagatatatggtgtcttacagagagatagccacgtctgcggttgatttggcgatagctgcttcaacctgtttagctcatatgagagcaccacatgacctccactgttttaggtttgagtcgctctttagagagttctgctcagtgtggtttgcttttgtggcagaagagcacaaccttaatcattttggctacctcaaaacacctgtcttgggtgttactgagcagccttctgctgctcaaactaccgaagagccactagcaagtggtacagagagtgttattggggttgaacagcccacaccagctatagcacctcagcctaatgttcctatcgtgagcagaaaaaggacgttgctcgatgtgccatctaaggtggcctctgttaatagggagagacgccgtgtcaagagaacggccggcgaaaatccttcttttgttcgtggcgtacttaacggtatgttattggaataa
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| Protein seq | MPLGWLASEHTAPHALFAPSRGKAAFSTASSKPGDTILSSSHVYFELLLFANGEISLPPDSMPSLGVSSIGVSFVSLLNAVASHCQLPLVSYLWEMGSDGVLLAGVELVLVSGEHSGQRGCRFFWCVAFEPYETAHEPAAREAVRFLQSIYGFVVHDYNFRYMVSYREIATSAVDLAIAASTCLAHMRAPHDLHCFRFESLFREFCSVWFAFVAEEHNLNHFGYLKTPVLGVTEQPSAAQTTEEPLASGTESVIGVEQPTPAIAPQPNVPIVSRKRTLLDVPSKVASVNRERRRVKRTAGENPSFVRGVLNGMLLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0233900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0233900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007800 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010290 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007950 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010130 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007530 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009430 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008060 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007770 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007590 | RBH | 0.0 | 0.0 | 0.0 |
