Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0006230 | OGI:08014480 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:5505179-5506684 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTGGAGGTTCCCAGGATTTGGTTGAAGGGGCCGCCGCAAAATTCTCTGTCTCAGTACCCTTTTGCTTCGAATTTGAGTGGGAAGGATCTGTATAAGGTGGCCGAGATGCAGCTCTCCCTGATGCACGACATCTTCTACACCAAGGTAGAGGTCATCCACAGTAATTTGTATGGCCTTTGCATTCATATGCTTCCAGCCATGGCGACCACCGCTGCATTCCTGCTGTTTCAGCTGGTGATACTAGGCCGTGAGGGCCATGGCTACGACAGGCTAGATGTGGCTGTCACTTATGTCCTGCTAGTTGGCGCTGTCATCCTGGAGACTGCGTCCTTGTTGCGGGCTATGTTCTCGAGCTGGACATGTCCTCTCTTGGTGAGGTGGAGTCGCCATAAGCGCGGAATGGAGGACAATACTGTATGTAACAATCTGGGCCATACAATTACGAGCCTCCGCCGGCTCGTCCGTGCAGCGCAATGGAGAAGAAGGTACTGGTCGTGCTCCATGGGGCAGCACAACTTGCTTCGGTTGGGCGTTGGCAGCACGACCAGCCGAAGAAGCAAGATGGCAAGATGGATGGGAGTTGAAGATTGGTGGAACACCAAGGCTTACTCGTGGCCCATCCCCGTCTCGGAGTGCATCCAGGAGCTGTTGGTGAACCAAGTATTGGAGAGAGAAGGTACTGCCTCCTCCTCGATCTCGATGGTGTTGGACGAACAAGATCAATTTCCAATTCCATCAAAAGGAGAAGAAGAGGAGGGCTCTGCCTCTCATGGATCAAGACCAGAAGCAGACGCAGATGATCAGCTTTTTGATTCAAAGGGTCGAGCGGAGTTGAAGAGATGGGGACTGTACGAGGGTGGCCAGACCTTGAACGGGGAGGAGCGGCTGACCTGGAGCGTGGAGGAGCGCATCCTTGTCTGGCACCTCGCCACTAACATCTACCTCACCTGGTGGAACAAGAAGCAGCAGAAGCAGGACAAGCAACAACCCATGGCCAAGGCGGCCGAGGCGCTCTCCAACTACATGATGTTCCTCCTCGCCGCACGCCCCTACATGCTGTCTCCCACTGCCAGCCGCGATTCATACGTCGAGATGGCCTACGCTCTCACCCCCGCCGGCGGCCTGCGGTACGACTCAGCCGAGCAATTGGCCAGCTTCCTACGGACCTACGGGGATACACCCGAGTATGATGCTCGTGGTAGGCTACGACACAGGTACGGTTCCAACCTTGATTTTACAACACAACACCATCTCCAGCTGGTTTTAGACACAGGATGTGAGCTCGGTGCAAAGCTCATCAGCCAGGACGAGTTACAAGAGGCAGGGGCAGACGGCAAGCTAGGCCTCATCGCCCAAGTCTGGGTGGAGGTCTTGTGCCACGCGGGCCAGCAATGCAGCGCATATTCTCATGCCCGGCAGCTCAGCAACGGCGGCGAGCTCATCACCGTCGCTGCCCTCCTAGTGGAATACGTCACGAAACGTATCCTAACGTTTCCTCGCTAA
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| CDS seq | ATGCTGGAGGTTCCCAGGATTTGGTTGAAGGGGCCGCCGCAAAATTCTCTGTCTCAGTACCCTTTTGCTTCGAATTTGAGTGGGAAGGATCTGTATAAGGTGGCCGAGATGCAGCTCTCCCTGATGCACGACATCTTCTACACCAAGGTAGAGGTCATCCACAGTAATTTGTATGGCCTTTGCATTCATATGCTTCCAGCCATGGCGACCACCGCTGCATTCCTGCTGTTTCAGCTGGTGATACTAGGCCGTGAGGGCCATGGCTACGACAGGCTAGATGTGGCTGTCACTTATGTCCTGCTAGTTGGCGCTGTCATCCTGGAGACTGCGTCCTTGTTGCGGGCTATGTTCTCGAGCTGGACATGTCCTCTCTTGGTGAGGTGGAGTCGCCATAAGCGCGGAATGGAGGACAATACTGTATGTAACAATCTGGGCCATACAATTACGAGCCTCCGCCGGCTCGTCCGTGCAGCGCAATGGAGAAGAAGGTACTGGTCGTGCTCCATGGGGCAGCACAACTTGCTTCGGTTGGGCGTTGGCAGCACGACCAGCCGAAGAAGCAAGATGGCAAGATGGATGGGAGTTGAAGATTGGTGGAACACCAAGGCTTACTCGTGGCCCATCCCCGTCTCGGAGTGCATCCAGGAGCTGTTGGTGAACCAAGTATTGGAGAGAGAAGGTACTGCCTCCTCCTCGATCTCGATGGTGTTGGACGAACAAGATCAATTTCCAATTCCATCAAAAGGAGAAGAAGAGGAGGGCTCTGCCTCTCATGGATCAAGACCAGAAGCAGACGCAGATGATCAGCTTTTTGATTCAAAGGGTCGAGCGGAGTTGAAGAGATGGGGACTGTACGAGGGTGGCCAGACCTTGAACGGGGAGGAGCGGCTGACCTGGAGCGTGGAGGAGCGCATCCTTGTCTGGCACCTCGCCACTAACATCTACCTCACCTGGTGGAACAAGAAGCAGCAGAAGCAGGACAAGCAACAACCCATGGCCAAGGCGGCCGAGGCGCTCTCCAACTACATGATGTTCCTCCTCGCCGCACGCCCCTACATGCTGTCTCCCACTGCCAGCCGCGATTCATACGTCGAGATGGCCTACGCTCTCACCCCCGCCGGCGGCCTGCGGTACGACTCAGCCGAGCAATTGGCCAGCTTCCTACGGACCTACGGGGATACACCCGAGTATGATGCTCGTGGTAGGCTACGACACAGGTACGGTTCCAACCTTGATTTTACAACACAACACCATCTCCAGCTGGTTTTAGACACAGGATGTGAGCTCGGTGCAAAGCTCATCAGCCAGGACGAGTTACAAGAGGCAGGGGCAGACGGCAAGCTAGGCCTCATCGCCCAAGTCTGGGTGGAGGTCTTGTGCCACGCGGGCCAGCAATGCAGCGCATATTCTCATGCCCGGCAGCTCAGCAACGGCGGCGAGCTCATCACCGTCGCTGCCCTCCTAGTGGAATACGTCACGAAACGTATCCTAACGTTTCCTCGCTAA
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| Protein seq | MLEVPRIWLKGPPQNSLSQYPFASNLSGKDLYKVAEMQLSLMHDIFYTKVEVIHSNLYGLCIHMLPAMATTAAFLLFQLVILGREGHGYDRLDVAVTYVLLVGAVILETASLLRAMFSSWTCPLLVRWSRHKRGMEDNTVCNNLGHTITSLRRLVRAAQWRRRYWSCSMGQHNLLRLGVGSTTSRRSKMARWMGVEDWWNTKAYSWPIPVSECIQELLVNQVLEREGTASSSISMVLDEQDQFPIPSKGEEEEGSASHGSRPEADADDQLFDSKGRAELKRWGLYEGGQTLNGEERLTWSVEERILVWHLATNIYLTWWNKKQQKQDKQQPMAKAAEALSNYMMFLLAARPYMLSPTASRDSYVEMAYALTPAGGLRYDSAEQLASFLRTYGDTPEYDARGRLRHRYGSNLDFTTQHHLQLVLDTGCELGAKLISQDELQEAGADGKLGLIAQVWVEVLCHAGQQCSAYSHARQLSNGGELITVAALLVEYVTKRILTFPR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0006230 | OsCMeo_08g0006230.01 | Chr08 | 5505179 | 5506684 | + | NAM | ||
| CDS seq | ATGCTGGAGGTTCCCAGGATTTGGTTGAAGGGGCCGCCGCAAAATTCTCTGTCTCAGTACCCTTTTGCTTCGAATTTGAGTGGGAAGGATCTGTATAAGGTGGCCGAGATGCAGCTCTCCCTGATGCACGACATCTTCTACACCAAGGTAGAGGTCATCCACAGTAATTTGTATGGCCTTTGCATTCATATGCTTCCAGCCATGGCGACCACCGCTGCATTCCTGCTGTTTCAGCTGGTGATACTAGGCCGTGAGGGCCATGGCTACGACAGGCTAGATGTGGCTGTCACTTATGTCCTGCTAGTTGGCGCTGTCATCCTGGAGACTGCGTCCTTGTTGCGGGCTATGTTCTCGAGCTGGACATGTCCTCTCTTGGTGAGGTGGAGTCGCCATAAGCGCGGAATGGAGGACAATACTGTATGTAACAATCTGGGCCATACAATTACGAGCCTCCGCCGGCTCGTCCGTGCAGCGCAATGGAGAAGAAGGTACTGGTCGTGCTCCATGGGGCAGCACAACTTGCTTCGGTTGGGCGTTGGCAGCACGACCAGCCGAAGAAGCAAGATGGCAAGATGGATGGGAGTTGAAGATTGGTGGAACACCAAGGCTTACTCGTGGCCCATCCCCGTCTCGGAGTGCATCCAGGAGCTGTTGGTGAACCAAGTATTGGAGAGAGAAGGTACTGCCTCCTCCTCGATCTCGATGGTGTTGGACGAACAAGATCAATTTCCAATTCCATCAAAAGGAGAAGAAGAGGAGGGCTCTGCCTCTCATGGATCAAGACCAGAAGCAGACGCAGATGATCAGCTTTTTGATTCAAAGGGTCGAGCGGAGTTGAAGAGATGGGGACTGTACGAGGGTGGCCAGACCTTGAACGGGGAGGAGCGGCTGACCTGGAGCGTGGAGGAGCGCATCCTTGTCTGGCACCTCGCCACTAACATCTACCTCACCTGGTGGAACAAGAAGCAGCAGAAGCAGGACAAGCAACAACCCATGGCCAAGGCGGCCGAGGCGCTCTCCAACTACATGATGTTCCTCCTCGCCGCACGCCCCTACATGCTGTCTCCCACTGCCAGCCGCGATTCATACGTCGAGATGGCCTACGCTCTCACCCCCGCCGGCGGCCTGCGGTACGACTCAGCCGAGCAATTGGCCAGCTTCCTACGGACCTACGGGGATACACCCGAGTATGATGCTCGTGGTAGGCTACGACACAGGTACGGTTCCAACCTTGATTTTACAACACAACACCATCTCCAGCTGGTTTTAGACACAGGATGTGAGCTCGGTGCAAAGCTCATCAGCCAGGACGAGTTACAAGAGGCAGGGGCAGACGGCAAGCTAGGCCTCATCGCCCAAGTCTGGGTGGAGGTCTTGTGCCACGCGGGCCAGCAATGCAGCGCATATTCTCATGCCCGGCAGCTCAGCAACGGCGGCGAGCTCATCACCGTCGCTGCCCTCCTAGTGGAATACGTCACGAAACGTATCCTAACGTTTCCTCGCTAA
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| Protein seq | MLEVPRIWLKGPPQNSLSQYPFASNLSGKDLYKVAEMQLSLMHDIFYTKVEVIHSNLYGLCIHMLPAMATTAAFLLFQLVILGREGHGYDRLDVAVTYVLLVGAVILETASLLRAMFSSWTCPLLVRWSRHKRGMEDNTVCNNLGHTITSLRRLVRAAQWRRRYWSCSMGQHNLLRLGVGSTTSRRSKMARWMGVEDWWNTKAYSWPIPVSECIQELLVNQVLEREGTASSSISMVLDEQDQFPIPSKGEEEEGSASHGSRPEADADDQLFDSKGRAELKRWGLYEGGQTLNGEERLTWSVEERILVWHLATNIYLTWWNKKQQKQDKQQPMAKAAEALSNYMMFLLAARPYMLSPTASRDSYVEMAYALTPAGGLRYDSAEQLASFLRTYGDTPEYDARGRLRHRYGSNLDFTTQHHLQLVLDTGCELGAKLISQDELQEAGADGKLGLIAQVWVEVLCHAGQQCSAYSHARQLSNGGELITVAALLVEYVTKRILTFPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.960770 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0194900 | RBH | 0.0 | 0.0 | 0.140272 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09570 | RBH | 0.0 | 0.0 | 0.058450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0194900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006160 | RBH | 0.0 | 0.634667 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0083200 | RBH | 0.0746935 | 0.0802845 | 0.0344875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005810 | RBH | 0.0 | 0.0 | 0.040595 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0086500 | RBH | 0.0200255 | 0.105206 | 0.178714 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005760 | RBH | 0.0 | 7.941190 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005870 | RBH | 0.0 | 4.579914 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005760 | RBH | 0.0 | 0.0 | 0.0 |
