Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0027030 | OGI:07077180 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:27816110-27819900 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatttggggttggtttcgatcagaaaaatcgtaaaaagacagttatgcaccacagttcggtttcgattaattttatactgatgtatcagatcaagatcatttccatttgcgaacaattcttcagaaatttcatctcccagcctaacacatcggccactgcgtatatctcttctgtacgcggatgcgtcgtgtcgtccgacgaaaacttgtgcaaatgcagtgcctcgccagcgccggcgtccacccagctgaacccgatctccttcttgacgcctctgtccctcatcttcctcctcaccttggcgacgccgtcccagtcgcccacgtcggcgtagatgttcgacaggaggacgtacgcgccggactccgtcggctccttctccgtcaaaattctggcgatcctctcgccgatctccgcgtcgccatggattctgcaggctccgagcaagctctgcagcgccgacacgctcggccccgccggcatccgcatcatgagctcctcagcctccgccagcctccctgcccggcctaacatgtcgacgacgcaggagtagtgctccggccacagctcgacgccgcgatcggcagccatcgagtcgaagatgtccctgccggcgtcgaccatcccgccgtaccggcaggccgtgaggacggcgaggagcacgacgccgtccggtgcgacgccggagcgcgccatgtcgccgaagaggctcatgacggcgccgtagctcccgtgcctggcgttcgccgagatgatcgccgtccaggcgatgaggctccgctgctccgtctcgtggaacgccttccgggactcttccaagttgccacgcttcgcgtacatgtcgatgagggcgccggcgacgtactcgctgtcgccgaagcccatgctgagagccctggagtggtacatctggccgtacgccatggacaccgtctccaccgcggtcaccgcgctgaggacgctcgcgaacgtggtctcgttgggtgtcaggcacctggccatggacgagaagagctcgagggcgtcgttgcaccggccgttctgcgcgtagcccgagatcacagcgttccacgcgatgatctcccggcgaggcatgaggtcgaacaccatcctcgcgtcgtccatgcgacgcgccttggcatacatggtgatgaggctgttcgacgccgccgcttcgccggacacggcggccttgaggcacgccgcgtggaccatctgcgctcccctcgccggacagtccgctggcagcgccgacatcagcgccacgaaggtgacctcgttcggcggcacgccgtctcgccgcatgccattgaacagcgtgagggcgtcctcgccgtccatggagatggccgtggtccatgacacgacgtcgcgctcgctcatggcgtcgaacagcctccgggcgctgccgggagcgccgcacttgtagtacatcgcgacgagcacgttgccgatggagacgtatccctcgacgcccagcttcaccgcaaagccatggacttgccggccgagctcgagcttcccctcgccgccacatgccgggatcacgctgcagaccgatatccggtcaggctggacgtcgccgtccctgagcatccggaggaacacgccaatcacctcggccgggcagtcgccgtcttgcgcgagcccgcagatcaacgcgttccatgagacgaggtccctcgccggcatatcgtcgaacacactcctggcctccccgagagaccctccacgtgagtacgcagtgacgagcgcgttgccgacgaacacatcagccgcgagcccggaccgccaagccagcgcgtgcagctgccgcacgaggaagccctccccccggccggcggccagcgagagcgcgacggtgcacgtgacggcgtcgggccgcacggcgccggagcggagcatccacgacgcgaagtcgagcgcctcggccgggtcagggaacgcggagaggatggtgttgtaggagctgacatccctcgcccgcgccgcggcgaacaccccgacggcggaagggaacgacccggtcttggcgtagcgggcggcgagggagttggtcacggcggcgaagccgtggaggccggtggttacggcgacggcgtggagcgccgggagggaggccgggtcggacgccctgacggcggccgagaaggcgatggggttgacgcggcggtggcgggcgagcgacgggtggggaattccgtcgaacgggtggtgggcggcagcggtggagagcgtgcggatccgcagccgccgtagtggcatctagtgtagtttttcaaccacggatttgagatcctctcactaaagtcacatgattttgagtcactgacatgtgggccctctttgttatggacccacatgccagagactctagtaggataaaagcccaagggccaaacccctcctcttcttcctccggtctctcgctcctcgcgcaaatctccggtcgctgcagcccttcggccatggcggcgtcgtccgtgctgcagcctgcggcggccgccgccgcgtggccgcgcttcctcccctctcctcgccggagcgccgcccaggtactaaggtttccttcacttcttaggcctgcaactcctgtttcgtggcgtggggcaggcaattcgtcgaatggcttgtggttgggaagaaatcaagaaattgcagcgcagcgacagtaaaattctagggtaattggctaaggtagtgaagatgctacattctcgggaacgaatcacctgaccgggctgaaatctgtgtagtgtagttcaaggcgtactgtaactttgtaggtgcagtttgtggtgaaaattttccatctcgtgtgttgtttgaaacatgaaactagctcagtcttagcttgaaacaacaacagaacttacttcttggtgtagaaacgttaggtgtgttgtgactactgactagtttcccataattctgtccccctttttggccttatccagttgcaatgtaatcttatcagatgtttctttcaggaagagttgcttgatacactaacagttcaacacaatatccttttgatgtttatgttccttgtatacaattactctgaatgagaaaccccccatttcatattataagatgctttgatttttttctaagttaaacttccataagttcaatcaagttaaagaaaaatatagcaactcttataacacgaaattaattctattaaatctaacatcgaatatattttgattatatgtttgcttgatgttaccatgtttctatgcttttctataaatttgatcaaatttaaagaagtttgatttagaaaaaaaaatcaagtgtcttgtaatatgaaaatggagggagtaacaccctattagcatccctacaacaaatcactgattcctgaactattttgtggttaaattaaaggcttctgaatagttcttatttatatccgaactctcagatgtgtcatttattcttggaacagacatatcaagttctttccatgcacaagtttgagtggaagcgccctttcagcggtaggtaccaacattcgctgcaatttacaacattcagtgacaggactggagttgtaaacttgtaattcaaactttggtttcacatcgttgccctgaagtgttgagataaattttgtgactgcatctgcaggttcacaccggtccggtattcttcttgtttgcagaagttcaggttcctctgtaaaagcagctacttcaagcagacccgaagctgtttcctcttctcataacgatcaatccagcaaacatttatttggttctgtttcagatgcttataccat
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| CDS seq | atggaaacagcttcgggtctgcttgaagtagctgcttttacagaggaacctgaacttctgcaaacaagaagaataccggaccgggcgtccgacccggcctccctcccggcgctccacgccgtcgccgtaaccaccggcctccacggcttcgccgccgtgaccaactccctcgccgcccgctacgccaagaccgggtcgttcccttccgccgtcggggtgttcgccgcggcgcgggcgagggatgtcagctcctacaacaccatcctctccgcgttccctgacccggccgaggcgctcgacttcgcgtcgtggatgctccgctccggcgccgtgcggcccgacgccgtcacgtgcaccgtcgcgctctcgctggccgccggccggggggagggcttcctcgtgcggcagctgcacgcgctggcttggcggtccgggctcgcggctgatgtgttcgtcggcaacgcgctcgtcactgcgtactcacgtggagggtctctcggggaggccaggagtgtgttcgacgatatgccggcgagggacctcgtctcatggaacgcgttgatctgcgggctcgcgcaagacggcgactgcccggccgaggtgattggcgtgttcctccggatgctcagggacggcgacgtccagcctgaccggatatcggtctgcagcgtgatcccggcatgtggcggcgaggggaagctcgagctcggccggcaagtccatggctttgcggtgaagctgggcgtcgagggatacgtctccatcggcaacgtgctcgtcgcgatgtactacaagtgcggcgctcccggcagcgcccggaggctgttcgacgccatgagcgagcgcgacgtcgtgtcatggaccacggccatctccatggacggcgaggacgccctcacgctgttcaatggcatgcggcgagacggcgtgccgccgaacgaggtcaccttcgtggcgctgatgtcggcgctgccagcggactgtccggcgaggggagcgcagatggtccacgcggcgtgcctcaaggccgccgtgtccggcgaagcggcggcgtcgaacagcctcatcaccatgtatgccaaggcgcgtcgcatggacgacgcgaggatggtgttcgacctcatgcctcgccgggagatcatcgcgtggaacgctgtgatctcgggctacgcgcagaacggccggtgcaacgacgccctcgagctcttctcgtccatggccaggtgcctgacacccaacgagaccacgttcgcgagcgtcctcagcgcggtgaccgcggtggagacggtgtccatggcgtacggccagatgtaccactccagggctctcagcatgggcttcggcgacagcgagtacgtcgccggcgccctcatcgacatgtacgcgaagcgtggcaacttggaagagtcccggaaggcgttccacgagacggagcagcggagcctcatcgcctggacggcgatcatctcggcgaacgccaggcacgggagctacggcgccgtcatgagcctcttcggcgacatggcgcgctccggcgtcgcaccggacggcgtcgtgctcctcgccgtcctcacggcctgccggtacggcgggatggtcgacgccggcagggacatcttcgactcgatggctgccgatcgcggcgtcgagctgtggccggagcactactcctgcgtcgtcgacatgttaggccgggcagggaggctggcggaggctgaggagctcatgatgcggatgccggcggggccgagcgtgtcggcgctgcagagcttgctcggagcctgcagaatccatggcgacgcggagatcggcgagaggatcgccagaattttgacggagaaggagccgacggagtccggcgcgtacgtcctcctgtcgaacatctacgccgacgtgggcgactgggacggcgtcgccaaggtgaggaggaagatgagggacagaggcgtcaagaaggagatcgggttcagctgggtggacgccggcgctggcgaggcactgcatttgcacaagttttcgtcggacgacacgacgcatccgcgtacagaagagatatacgcagtggccgatgtgttaggctgggagatgaaatttctgaagaattgttcgcaaatggaaatgatcttgatctga
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| Protein seq | METASGLLEVAAFTEEPELLQTRRIPDRASDPASLPALHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVGVFAAARARDVSSYNTILSAFPDPAEALDFASWMLRSGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAISMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVAKVRRKMRDRGVKKEIGFSWVDAGAGEALHLHKFSSDDTTHPRTEEIYAVADVLGWEMKFLKNCSQMEMILI |
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| Function | Pentatricopeptide repeat-containing protein At4g32430, mitochondrial [UniProtKB/Swiss-Prot:Q84MA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0027030 | OsCMeo_07g0027030.01 | Chr07 | 27816110 | 27819900 | - | NAM | ||
| CDS seq | atggaaacagcttcgggtctgcttgaagtagctgcttttacagaggaacctgaacttctgcaaacaagaagaataccggaccgggcgtccgacccggcctccctcccggcgctccacgccgtcgccgtaaccaccggcctccacggcttcgccgccgtgaccaactccctcgccgcccgctacgccaagaccgggtcgttcccttccgccgtcggggtgttcgccgcggcgcgggcgagggatgtcagctcctacaacaccatcctctccgcgttccctgacccggccgaggcgctcgacttcgcgtcgtggatgctccgctccggcgccgtgcggcccgacgccgtcacgtgcaccgtcgcgctctcgctggccgccggccggggggagggcttcctcgtgcggcagctgcacgcgctggcttggcggtccgggctcgcggctgatgtgttcgtcggcaacgcgctcgtcactgcgtactcacgtggagggtctctcggggaggccaggagtgtgttcgacgatatgccggcgagggacctcgtctcatggaacgcgttgatctgcgggctcgcgcaagacggcgactgcccggccgaggtgattggcgtgttcctccggatgctcagggacggcgacgtccagcctgaccggatatcggtctgcagcgtgatcccggcatgtggcggcgaggggaagctcgagctcggccggcaagtccatggctttgcggtgaagctgggcgtcgagggatacgtctccatcggcaacgtgctcgtcgcgatgtactacaagtgcggcgctcccggcagcgcccggaggctgttcgacgccatgagcgagcgcgacgtcgtgtcatggaccacggccatctccatggacggcgaggacgccctcacgctgttcaatggcatgcggcgagacggcgtgccgccgaacgaggtcaccttcgtggcgctgatgtcggcgctgccagcggactgtccggcgaggggagcgcagatggtccacgcggcgtgcctcaaggccgccgtgtccggcgaagcggcggcgtcgaacagcctcatcaccatgtatgccaaggcgcgtcgcatggacgacgcgaggatggtgttcgacctcatgcctcgccgggagatcatcgcgtggaacgctgtgatctcgggctacgcgcagaacggccggtgcaacgacgccctcgagctcttctcgtccatggccaggtgcctgacacccaacgagaccacgttcgcgagcgtcctcagcgcggtgaccgcggtggagacggtgtccatggcgtacggccagatgtaccactccagggctctcagcatgggcttcggcgacagcgagtacgtcgccggcgccctcatcgacatgtacgcgaagcgtggcaacttggaagagtcccggaaggcgttccacgagacggagcagcggagcctcatcgcctggacggcgatcatctcggcgaacgccaggcacgggagctacggcgccgtcatgagcctcttcggcgacatggcgcgctccggcgtcgcaccggacggcgtcgtgctcctcgccgtcctcacggcctgccggtacggcgggatggtcgacgccggcagggacatcttcgactcgatggctgccgatcgcggcgtcgagctgtggccggagcactactcctgcgtcgtcgacatgttaggccgggcagggaggctggcggaggctgaggagctcatgatgcggatgccggcggggccgagcgtgtcggcgctgcagagcttgctcggagcctgcagaatccatggcgacgcggagatcggcgagaggatcgccagaattttgacggagaaggagccgacggagtccggcgcgtacgtcctcctgtcgaacatctacgccgacgtgggcgactgggacggcgtcgccaaggtgaggaggaagatgagggacagaggcgtcaagaaggagatcgggttcagctgggtggacgccggcgctggcgaggcactgcatttgcacaagttttcgtcggacgacacgacgcatccgcgtacagaagagatatacgcagtggccgatgtgttaggctgggagatgaaatttctgaagaattgttcgcaaatggaaatgatcttgatctga
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| Protein seq | METASGLLEVAAFTEEPELLQTRRIPDRASDPASLPALHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVGVFAAARARDVSSYNTILSAFPDPAEALDFASWMLRSGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAISMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVAKVRRKMRDRGVKKEIGFSWVDAGAGEALHLHKFSSDDTTHPRTEEIYAVADVLGWEMKFLKNCSQMEMILI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0670000 | RBH | 0.435389 | 0.317114 | 0.180922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47370 | RBH | 0.289400 | 0.215030 | 0.059734 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0670000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027180 | RBH | 0.0 | 3.549324 | 0.561198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027210 | RBH | 0.057728 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0015350 | SBH | 0.208179 | 0.0 | 1.465249 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026780 | RBH | 0.0 | 0.016004 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027040 | RBH | 0.000000 | 0.000000 | 0.517928 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0459100 | RBH | 0.6188405 | 1.2842735 | 0.402419 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027540 | RBH | 0.043623 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0472700 | RBH | 0.7034175 | 1.428512 | 2.442749 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026960 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027300 | RBH | 0.000000 | 0.109709 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026960 | RBH | 0.140048 | 0.397244 | 0.158483 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026720 | RBH | 0.000000 | 0.000000 | 0.359520 |
