Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0026850 | OGI:07076880 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:27687037-27691567 | ||||||||
| Gene Symbol | Orysa;CKL6 | ||||||||||
| DNA seq | cgtccccttcactcgccaaaggcgcaaactttactacttacccccacctccatctccacctccatctcccctccgcccgcgccgccgcctccggatcgcgccgcccccgcccccgcccccgccccgcccagacctcatgctgactacccgccgcaggtgctgacgcgacgccatgggctgcgtgcacggccgcccctccacctccagccccgccgccgccaacgcctcacgtcgccgcgaccacccgcctccgcctgcggaggcgcagaagcagggggcggatgcttctgcggaggcggatgctgctgcgggcgagaagggcgagcagccggccgtcgccgtcgccgcggcggggccgccggtgaagagggagcggcgctcgcggtcgtcgaggtcggcgcacgcgcacgcgcacgccgaggtgcgcatcggggggagcttcgcgaacaaggcgcgcggcgagcaggtggccgcgggctggcccgcctggctctccgccgtcgccggcgacgccatcgacggctggacccctcgccgcgccgactccttcgagaagatcgacaaggtgcgcctcctcccctcccctcaaaaaatctccccgcgatccaccgccgcgggagctcgctcatcttcggctctgactctcgtctcgccattctagatcgggcaaggcacgtacagcaacgtgtacaaggcgcgggactcggtgagcggcaagatcgtggcgctcaagaaggtgcgcttcgacaacctggagcccgagagcgtgcgcttcatggccagggagatcctcatcctccgccgcctcgaccaccccaatgtcatcaagctcgacggcctcgtcacctcccgcatgtcctgcagcctctacctcgtcttcgactacatggtccacgacctcgccggcctcgccgccagccccgagatcaagttcaccctgccccaggtcggtcaagatcccatttccggccgaattatgcgaaatgtggtgtcaattgaggctgattgagacttcgagaggtgtttgtgggcgcaggtcaagtgctatgtgcaccagctgttgtcgggattggagcactgccacgaccggggggtgctgcaccgcgacatcaaggggtcgaacctgcttttggacaacaatggcgtgctgaagatcggggactttggtctcgcgtcgttcttcgacccgaaccataagcagccgatgacgagtagggtggtgacgctctggtaccggccaccagagttgctgttgggcgcgacggattatggcgtaggcgtggacttgtggagcgcgggatgtatccttgctgaattgctcgcagggaaacctatcatgcctgggcggaccgaggttagctacataatgatctgttattgttgtatagttatgctttagacaccttgtagcacatatctttcaaatattcagttcagcaccaaccaaagtttcactattaaactaggaatggcaatggatactgttcaaatgccatcttctgtagtacttttcaaataggaattattttcaaaatgttttcttttggtcattgagcttatcatttatctgaattgtctatttggcacactgaagtatggtacaaacataaaatgtttgttaccccttattgctgctcagtgcagcagatagttgagagttgagactattccatccaatcgaccttctatcttgtgttcttgttcatatagctgttttcttgatttatgtaattatgtaattcagaaacatctacatatcaagtgatacactgacatctcatctgaaaagaaaagccttctcacctgccttcaagtcaaatcttgtttccacttaccagctgccacttctgttgtttcagttctcaatgacttgaacccttaccttgctcgtcaggacataaagcctgtcctatagcgcaactgtgtttaatgttatgtacttttagtcaaaacgtatattaacattttccttctcatgatattctgttgttttaattatgtttttttatccttttaggtggaacagctgcataaaatttttaagttgtgtggttcccccacagaagaatattggaaaaaatcgaagttgcctcatgcaactatattcaagccccaacaaccttacaaaaggcgaatagctgatacattcaaagatttcccacaatcagcactgcgacttattgaaacactacttgcaatcgacccagctgatcgtttaacagcgacttctgcgttagaaagtgaagtaagttgtcctagtttttgccattctgttcctattttattgaaatgagaaaattgaggttctgaacttatgaattcaaattatacctaaaatatttcatggcatctctctggcttctttgtttggtagggtactgttcaatctttctgcaagtaacactagttcaattgtctttagtgcctgggatagtgagatggaactgagcagtatcaagaataataaactgcattattgtctttcgtattgtttgccattaaggccgttgtgatgctagaaaaattaagagtttaagacttcattggcaaccacaacaatgttcagaatttcatctttaaggttcaaatagggtcataagctcataactcaaatttaatttagagatcaccatgggattttgacgttatctttgcatatgtatgaacagaatccaattttagctattcttggtagcaatctctttgatgtaaatgctttaataataacatgtttttcaccataaacacagttctttaaaacggaaccacatgcatgtgatccatcaagtttaccccaataccccccaagcaaagagatggatgcaaaacgaagagacgaagaagccagacggtttgtctccctactaccctgcctttccattcctttagaaagttgtgttgtttcagaatatttgcttttgcatcgtctttctgagttctctgtaatttcatctaagttcaagcgattttgttgatttaaaagagcatgtagcatgcaaactgatacaacatagacaggtaaatgatcttgcaataaaaggaccagatcatcaggttgaattaggactagagtcttgaaatctagttgaaataggtatattgtcatcttctccggtatgcataggtgagcaatggaacagaggacattactgctcactttgatgacaggaattcaatcaagcataacgtgacaaaattgcattcagcatagtggactataaagaagaaaatgtatttgttgactgaaaagtaacttcagtgcactgcaaggccatatagtgatttgtaccaaaagacaaaagtcttggttgttgtgccaagattcctggatttctgggaacttgttgagtactatatttcttggacatcatcatgagtcaagcaacaagttgttcccctttccgttgcattttcaatatttctctcttcaaatattcccctaattgtaaaatatctttatttcataaacctgacttcttgaccttcagccagtttattggctgatgtgaatgagcttttgcaccctataaaatgctcattcgcttatcatttgatgatcaacagtttaagagctgctggtggtagagttaatggggaaggagctaggaagacaaggacaagggaaagacctagggctgttccagcaccggaagcaaatgctgagcttcaagcaaatattgatgtatgtgcttttttttggctgatttcagttgctcatttgttcatttgcatgatccgccacaatcagaaacatactcctagaacaatgttaagctcacagctcactcgatcgtacaacttgcagaaaagaagactaataacacatgcaaatgcgaagagcaagagtgaaaagttccctccgccacatcaggatggcgcacttggatatcctttgggttgttcaaatcatatggaacctgcatttgagccgccagatccatcttcattcagcactgtgttcccctacgagaaaggctctgtgcctacttggtctggaccattggccgatccttcttcaggcaaccagaagcgaaaacacaagtctggccgctcttcaaaacaaccggctaccgcccgtgctcgatgatctattgtatgatgtctagtgcataagaagtcttcaatactaaaaaggaaaaaaaatactggcagcggttcttgcaaagtgagacaatttaattgcaaatcaaggcaagcaacgatgaattttttttctcttagatccatgaattcattccatgtaaggattcttttttcgaacagcagtgtataggccggagagggagctcaattagtcaaaattctgtacattaggttctcttttccattcttacaagcaggcaagcagctatatgtcatgttagatttatgattcagtaatggaactttcagatctacttagcatgtcactgcaaactctcttactttcaaatatagcttatgtacaaccaatccaataccatttcatctgatgtggttatcttcagagaagctggaaaagaaaaatatactaaaaaaaaggtttcactat
More
|
||||||||||
| CDS seq | atgtcctgcagcctctacctcgtcttcgactacatggtccacgacctcgccggcctcgccgccagccccgagatcaagttcaccctgccccaggtcaagtgctatgtgcaccagctgttgtcgggattggagcactgccacgaccggggggtgctgcaccgcgacatcaaggggtcgaacctgcttttggacaacaatggcgtgctgaagatcggggactttggtctcgcgtcgttcttcgacccgaaccataagcagccgatgacgagtagggtggtgacgctctggtaccggccaccagagttgctgttgggcgcgacggattatggcgtaggcgtggacttgtggagcgcgggatgtatccttgctgaattgctcgcagggaaacctatcatgcctgggcggaccgaggtggaacagctgcataaaatttttaagttgtgtggttcccccacagaagaatattggaaaaaatcgaagttgcctcatgcaactatattcaagccccaacaaccttacaaaaggcgaatagctgatacattcaaagatttcccacaatcagcactgcgacttattgaaacactacttgcaatcgacccagctgatcgtttaacagcgacttctgcgttagaaagtgaattctttaaaacggaaccacatgcatgtgatccatcaagtttaccccaataccccccaagcaaagagatggatgcaaaacgaagagacgaagaagccagacgtttaagagctgctggtggtagagttaatggggaaggagctaggaagacaaggacaagggaaagacctagggctgttccagcaccggaagcaaatgctgagcttcaagcaaatattgataaaagaagactaataacacatgcaaatgcgaagagcaagagtgaaaagttccctccgccacatcaggatggcgcacttggatatcctttgggttgttcaaatcatatggaacctgcatttgagccgccagatccatcttcattcagcactgtgttcccctacgagaaaggctctgtgcctacttggtctggaccattggccgatccttcttcaggcaaccagaagcgaaaacacaagtctggccgctcttcaaaacaaccggctaccgcccgtgctcgatga
More
|
||||||||||
| Protein seq | MSCSLYLVFDYMVHDLAGLAASPEIKFTLPQVKCYVHQLLSGLEHCHDRGVLHRDIKGSNLLLDNNGVLKIGDFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATIFKPQQPYKRRIADTFKDFPQSALRLIETLLAIDPADRLTATSALESEFFKTEPHACDPSSLPQYPPSKEMDAKRRDEEARRLRAAGGRVNGEGARKTRTRERPRAVPAPEANAELQANIDKRRLITHANAKSKSEKFPPPHQDGALGYPLGCSNHMEPAFEPPDPSSFSTVFPYEKGSVPTWSGPLADPSSGNQKRKHKSGRSSKQPATARAR |
||||||||||
| Function | Probable serine/threonine-protein kinase At1g54610 [UniProtKB/Swiss-Prot:Q9ZVM9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0026850 | OsCMeo_07g0026850.01 | Chr07 | 27687849 | 27691567 | + | NAM | ||
| CDS seq | atgtcctgcagcctctacctcgtcttcgactacatggtccacgacctcgccggcctcgccgccagccccgagatcaagttcaccctgccccaggtcaagtgctatgtgcaccagctgttgtcgggattggagcactgccacgaccggggggtgctgcaccgcgacatcaaggggtcgaacctgcttttggacaacaatggcgtgctgaagatcggggactttggtctcgcgtcgttcttcgacccgaaccataagcagccgatgacgagtagggtggtgacgctctggtaccggccaccagagttgctgttgggcgcgacggattatggcgtaggcgtggacttgtggagcgcgggatgtatccttgctgaattgctcgcagggaaacctatcatgcctgggcggaccgaggtggaacagctgcataaaatttttaagttgtgtggttcccccacagaagaatattggaaaaaatcgaagttgcctcatgcaactatattcaagccccaacaaccttacaaaaggcgaatagctgatacattcaaagatttcccacaatcagcactgcgacttattgaaacactacttgcaatcgacccagctgatcgtttaacagcgacttctgcgttagaaagtgaattctttaaaacggaaccacatgcatgtgatccatcaagtttaccccaataccccccaagcaaagagatggatgcaaaacgaagagacgaagaagccagacgtttaagagctgctggtggtagagttaatggggaaggagctaggaagacaaggacaagggaaagacctagggctgttccagcaccggaagcaaatgctgagcttcaagcaaatattgataaaagaagactaataacacatgcaaatgcgaagagcaagagtgaaaagttccctccgccacatcaggatggcgcacttggatatcctttgggttgttcaaatcatatggaacctgcatttgagccgccagatccatcttcattcagcactgtgttcccctacgagaaaggctctgtgcctacttggtctggaccattggccgatccttcttcaggcaaccagaagcgaaaacacaagtctggccgctcttcaaaacaaccggctaccgcccgtgctcgatga
More
|
|||||||
| Protein seq | MSCSLYLVFDYMVHDLAGLAASPEIKFTLPQVKCYVHQLLSGLEHCHDRGVLHRDIKGSNLLLDNNGVLKIGDFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATIFKPQQPYKRRIADTFKDFPQSALRLIETLLAIDPADRLTATSALESEFFKTEPHACDPSSLPQYPPSKEMDAKRRDEEARRLRAAGGRVNGEGARKTRTRERPRAVPAPEANAELQANIDKRRLITHANAKSKSEKFPPPHQDGALGYPLGCSNHMEPAFEPPDPSSFSTVFPYEKGSVPTWSGPLADPSSGNQKRKHKSGRSSKQPATARAR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0026850 | OsCMeo_07g0026850.02 | Chr07 | 27687037 | 27691431 | + | IsoSeq | ||
| CDS seq | atgtcatcaagctcgacggcctcgtcacctcccgcatgtcctgcagcctctacctcgtcttcgactacatggtccacgacctcgccggcctcgccgccagccccgagatcaagttcaccctgccccaggtcaagtgctatgtgcaccagctgttgtcgggattggagcactgccacgaccggggggtgctgcaccgcgacatcaaggggtcgaacctgcttttggacaacaatggcg
More
|
|||||||
| Protein seq | MSSSSTASSPPACPAASTSSSTTWSTTSPASPPAPRSSSPCPRSSAMCTSCCRDWSTATTGGCCTATSRGRTCFWTTMA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.981774 | 14.377570 | 16.871403 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0596600 | SBH | 6.265709 | 5.506393 | 6.010578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47180 | RBH | 1.894042 | 2.457750 | 1.494501 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0668000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026990 | RBH | 0.898317 | 22.433746 | 8.490870 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027030 | RBH | 0.555954 | 4.466482 | 4.335880 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017540 | RBH | 1.428597 | 18.101717 | 6.706691 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026600 | RBH | 0.352569 | 0.527881 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026860 | RBH | 7.383568 | 27.098995 | 28.266090 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0457300 | RBH | 8.061898 | 13.5505635 | 15.137235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027360 | RBH | 0.048426 | 1.414615 | 2.814556 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0470700 | RBH | 8.9539115 | 10.348369 | 23.0047295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026640 | RBH | 0.537096 | 0.139360 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027080 | RBH | 1.089369 | 10.659803 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026770 | RBH | 7.076990 | 29.812801 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027120 | RBH | 0.163574 | 2.139838 | 1.838498 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026660 | RBH | 0.841870 | 13.290866 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026770 | RBH | 0.627268 | 3.961393 | 7.226336 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026530 | RBH | 1.046459 | 20.756241 | 17.063074 |
