Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0025640 | OGI:07075380 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:26721772-26726727 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taattagttgtctttttcttagtcatatatttcagccaaaggttgctcaattagatctcctggcgaacagctagtcaaatgcatttcagtacacaaaaagtctgcattttgcacgtggcactatgaccaagtgtgatgagcagattgaccaagtggcgcagccagtagccgcgtcggccaccccagcggcggtggaatgacctcgttgccggcggcctcgacccgaccaccgtcttcctcgtctccagcgtcgcgtccttcatgcggcctgacgaaccaatcgatctgagaaagaagtaggggcaatttagcattttcgtgcagccgatctgtgaaaaacaaataaaaaactatattaaaaatggcacaaactccccaaaagtagcgttttatcaagggtgacaatgacaatgcagtaaatggcattttatcgaatccaaacttaaataaaacagtggtgtatgattaatttttttttctctcttttccacccctctgttagtctaaattctctctgcaaaatagcctacgaagaaatccaaaaacaaaagcaaggaatcaattccgtaagatcaccagggataacatttttaaagcaaaagcaacatctccaggtttccaaataacccagcaaacaaatgcaatcgcaacaattaaaaaagtttgtaggaaagctactcggccgttgaccaaacaaattaatgagaagtattctgtacaggataaaagccaaatattaaccaatcatatccacacacacatcttcctaaactacattattttaatgacactgagaagtcaaaaacatcgagtaaaaaatgatcagtaaatactaaccgtgaagtgcagtcaactgtctctctctctttgtaatcctcgctctatattattgtgaaagcatggaggtcgagctagccgccgcgcggcaaactgcaaaaaagtcgttgaagaaagatggcgcgcccagcgggcgacgcagcaactcggcaacggtgcaaggcgccgccagagccaccggagaagcacctgaaccgcttcgtccgcatcatcgcgttcatagagagggccggcaacggcctcggtactctggtattcacatgggcaaccgtcgtcatcctcggtggcttctcgacgatgctcaccacacgggagttcaattgcgcaacgttgctagctctcctggaagccacaaggtcagcaatcaacttccatttttgttttactgtcaaaagcataaaaagagagagattagttcatatagttcaattgtactgcaggatgttcagccaaaacagtaggctagagtaccaattcttcttccggacaaggggagctttcaggcgtcctcgcctgatcaggttgattctgattgtatgcatggctgaggccatggtgtgcgtcatggcaaagttcagatttgcgaatttcagattggcaaagttccgatggagtccagctccagtgtatcatctaggtccggtaaaggtaacaccgtttataaccctgggtatgaccatgtccctgtttgtagttgccaagcttgtatgcccagtgattcttaagctgttcggcgacccacaactcagagctgtatcactatggagtcccctggctgcaatcctgttgttggtgccttgtctgttcctggaaacatcaataccccatccagacagattgcctgcattaaggaaatatttcgcattgctccttacggcagtgatcatagtgacaataaccaagttgcaatttcgatgcataacctcaatagtgaatagtccttgttgccgcaagatgtcgtttttgcgtccagtgattctgttcttgtgcatgtgcgctgtaatagcgatattgggaagcctgtattcggactctgcctatatagtagcacccatggccttcttcctgatatttgctttggtattagagtcatttggcaacttgcagataccagcagcagtcgtacgtgttgtgatagcaatgatacaaccaacaacggtcatatgtgtccaaagtattttgacagcagtgacgcagcgaacatcgggtatctatatcggcattccaaagaattgcaccagagaacatacatatcctgacggtactttaggagacaccaagaaaaatgtcaagttctctctagacgtcttctatgtaatagtccttacccaaggggcactctacattgtggcatgcgttctcgagatcttttcattcatccccaagatacacttagtccgtcaaagcaggttcagacggaagtggggaaggaaatgcgtagacatgtactattcgtacatattcgagcaatgtgtttccggtggtgcacttgctccaagaatcatggaactgaccagttttgccatggatttcacaaactcaaactcacccagcaaccagctctatgggatccaaatgctgcacagctttctaaaaaggaagcgcaccaaggcacttctgctcttgagactcaccacttccacagagacattgaatacactgatcagcatgttgggctggacaagtccagaggatgcgcaagttagattgtttgccacaaaggtcatcgtcgatctttcaaggagcctccaaattattggtatccctgggtcaatgcagaacatatcttcacttctggacactgaaaaccaattgagacgacgaaatccgctactttacacatattacagccaggagggaaaacaaggtacgattgtggacacgggtgatggccaagagcatattgaccaagatcatcctcacaacaacaaccgacttaactcctggatgcttggttgctggcaattgatttcaaagcgcaaaaaaacttcaaaggaggagacattcatagagcatgatctccttcctgtactgggaatgtcaatcctagagacacttgcagaatgtgatcctgacaactgtgcggaaatcagcaaagcaaaagacctcatccagaagattatagggtacagtaatgagacgcagccaaaaatactgaaaggttcatcactgaagttgctgacaaggctctcaaacactggtggggaaattggtataacccttcggcagaagatgtcagatcatcccttcctgttgagaaacctggcagaaatcttgggagacactgagggaagccaagaacataagaagctggcagcagagatcctcagaaaccttgccatcaatgggaacagcagggaggagataggttcaatccgagtgatcattagcaggttgatccaagcatttcttgcccaacatccatcatcaaacacatattctgatcggtcactacaaattacggctggtcaagcactagccatgctggcaatggaaagtgtcaataattgctcagcaatgttgaaggaaccaggatattcattcattagagagctcactgccatgatccgagatgacatacacaaatacatggccgcaagtcttctgcaaaatctatgcttgcatgctcaatccaagctcagcagctcagacttgacagaactatctcattccttgcgaaaggtgagcctgctcattcaacctacaagctcaaaattagaggctgtgcaatctattgtgcttgcaatctttctttttccttaacttgctatggaatgacctttttttaataaaaaggaataaccttatttttctttgttagatagtaactttttacaatgttgcataaccatgcctatggtgatatgtgcagtttgttagcacagtccaaagactactcagagctatattgcaggactgacgaaaagagtagaaaacgaataaagataagtggaattcttgttttcaataattgtaacttataaatgacttgctgtttcaatttcaggttttggaaagaataactgacacaacagttgcaacagaacttgaagtccttattggccttagttcacaaatatgccatgtcgttcctgaagactttgcccgagaactagagcatgatcagatgaaggaaagatttgtgaagaaactagttgaggcactgaatgcaaatgtgaaacctactgtccactgtcccaggatcaggagggtgatagttgagcaagttatatatatgatggaaaacaattctagttatgcgaactgtttcaatgaatgccagatgatggaagcactcatggtggtagaagagacaccttcaaaggttgaaaagtacaggctcttcatgggggatgcaggactaatggaatacagcataccactctctaatcttgtcgccagagcaaaggaagaattaatgcgtcatgtgacatgattggttaagaagcatcacaatttcctttttgaattttagaagcatcagcatcagtactcacaattagcagtttatatgtagatggtactgttttgtaatgctatccatgtaggagatctgctaaattaagagttggtatctaaattaagagcgggaaaatggtattattagcattgtacacaagacgaccacgacatatgtgtaattacgagaataactgcaggcattgtaatgaatttatctactttggcactattaacatttagtcttgtaatgttcaaagaatcaacggcagtggatatttcaggcgattactgttctacctgtcaagggcatcgcagttgtagcatgaattggtatgaattgaaacaatacccaacaccacagggttactcacttgggaactaagcccttaaccagtaccaatcccaagaccaagcaagagaggaaaaaataagttatactccagaaactaatctgtaaaccctaaatctgagcaccaaacgcacgggcgccggcgggagaaggaaggcaggaagagatcaagagatgggagggaggcgagagaaggtaatggcacccggtattaaggaatggaggcgggctggagctctctacaccgtgctgctcctgctgatctgctcgccgccggagcggcgcttgccaaccggcgaagccaccgc
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| CDS seq | atgacgcacaccatggcctcagccatgcatacaatcagaatcaacctgatcaggcgaggacgcctgaaagctccccttgtccggaagaagaattggagagctagcaacgttgcgcaattgaactcccgtgtggtgagcatcgtcgagaagccaccgaggatgacgacggttgcccatgtgaataccagagtaccgaggccgttgccggccctctctatgaacgcgatgatgcggacgaagcggttcaggtgcttctccggtggctctggcggcgccttgcaccgttgccgagttgctgcgtcgcccgctgggcgcgccatctttcttcaacgacttttttgcagtttgccgcgcggcggctag |
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| Protein seq | MTHTMASAMHTIRINLIRRGRLKAPLVRKKNWRASNVAQLNSRVVSIVEKPPRMTTVAHVNTRVPRPLPALSMNAMMRTKRFRCFSGGSGGALHRCRVAASPAGRAIFLQRLFCSLPRGG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0025640 | OsCMeo_07g0025640.02 | Chr07 | 26721804 | 26726727 | - | NAM | ||
| CDS seq | atgacgcacaccatggcctcagccatgcatacaatcagaatcaacctgatcaggcgaggacgcctgaaagctccccttgtccggaagaagaattggagagctagcaacgttgcgcaattgaactcccgtgtggtgagcatcgtcgagaagccaccgaggatgacgacggttgcccatgtgaataccagagtaccgaggccgttgccggccctctctatgaacgcgatgatgcggacgaagcggttcaggtgcttctccggtggctctggcggcgccttgcaccgttgccgagttgctgcgtcgcccgctgggcgcgccatctttcttcaacgacttttttgcagtttgccgcgcggcggctag
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| Protein seq | MTHTMASAMHTIRINLIRRGRLKAPLVRKKNWRASNVAQLNSRVVSIVEKPPRMTTVAHVNTRVPRPLPALSMNAMMRTKRFRCFSGGSGGALHRCRVAASPAGRAIFLQRLFCSLPRGG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0025640 | OsCMeo_07g0025640.01 | Chr07 | 26721772 | 26726727 | - | NAM | ||
| CDS seq | atgacgcacaccatggcctcagccatgcatacaatcagaatcaacctgatcaggcgaggacgcctgaaagctccccttgtccggaagaagaattggagagctagcaacgttgcgcaattgaactcccgtgtggtgagcatcgtcgagaagccaccgaggatgacgacggttgcccatgtgaataccagagtaccgaggccgttgccggccctctctatgaacgcgatgatgcggacgaagcggttcaggtgcttctccggtggctctggcggcgccttgcaccgttgccgagttgctgcgtcgcccgctgggcgcgccatctttcttcaacgacttttttgcagtttgccgcgcggcggctag
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| Protein seq | MTHTMASAMHTIRINLIRRGRLKAPLVRKKNWRASNVAQLNSRVVSIVEKPPRMTTVAHVNTRVPRPLPALSMNAMMRTKRFRCFSGGSGGALHRCRVAASPAGRAIFLQRLFCSLPRGG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 26722056 | 26722609 | - | OsCMeo_07g0025640.01 | OsCMeo_07g0025640.02,OsCMeo_07g0025640.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0653800 | SBH | 0.0 | 0.000000 | 0.192344 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0653800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025760 | RBH | 0.000000 | 0.000000 | 1.601804 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025810 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025830 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025580 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025830 | SBH | 0.000000 | 0.000000 | 2.897397 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026310 | RBH | 0.000000 | 0.063423 | 0.097304 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025600 | SBH | 0.000000 | 0.074243 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025800 | RBH | 0.000000 | 4.338191 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025670 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026030 | SBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025620 | RBH | 0.000000 | 0.553120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025620 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025530 | RBH | 0.000000 | 0.000000 | 0.268714 |
