Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0025620 | OGI:07002320 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:26712198-26715354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaagcaggggattccacccccgccgccaccagcgaagccaggtccggcggtggaacatctgcttcctccagcgcaacatccacatccagcagctccgctagcaccttcatgtgctgggtcgataacggctgatcaatcacggtagtgttctgctggaaggtgtcttgatccgcttcttcttcctcttcaatgatgcccatcttcttcatcgttaccttctgcgcttttgaagttgaatggcgacgagctccgttcccttgttgttgcagacgtgggctgcgccacggcgtgaaccactcagggatcacattgcgccaacaaggcttggatttggggactgactccggcggcctcctcccgagcagggaggggggaggctcagtagcgaccgacgcgaggaatccctgaagaatctggtccgcctcggggggtagcggcgtgttcgccggcgacccctccgaggttggccgcgcgcgggcgagtgccgtcgacggcgaggcgggaggtgggagcatcatctctccgctgagcgcctccctgctgctctcgatctcagtttcctggaccggccgctcgtcatcgctgtgggccacttcttcttggtgggcctgaggtggctcgtcctcgccacatacaacttggcccaccgacatttcctgtcccaggccagccacagcccgtctcaggtcagcctgccccagatcctggcctgccaagcccatgaggccgatcccctccgtcccaggttgctcatggctcggtttcttctgggcctgcttccgcacatagacacggaactctcccgcctttgccgccgattcaaacccacgatcactcctgctctcctgcgctgagctcagcgcgtcgccagtcgccttcaatgctggccgctcgcacccatgctccacgagcgacacctcagccatcgtatcctcaaaagagagcttcttggccaacgcgccaaaagatgactggctcgctcggcggggccgacgcagcacgcgttaatgcatatcccccatccggagttaatgcgacttcctgccctgaagccaggtcgtccccgtgaacgtgaacgtggtccacagtggcctcccggacctcatcactgagctcagcacggtcgccatccttctccgtgccgagcgccgacagttcaccgccggttaactcgtccagggagagttggagcggcggtgaaagaggcgacacaccaccggccacgagcgcccagctgcagtcgtcgtccagaacgataagcgcctttgccgttgcaaccacaggcgccgccagcggggtagcgattcccacgtcggcccctggttgctccactgcttgcaccgcttgcggagagaaccacacacccggcgcttgcaaaaccaacgtcggcgaatgcggctgtgacgccaacacctcccccgcctccatgtcttgaacaacaatgtcagcccggtctagaacccggtccgccgctgccatgtcaacgacccccaccaccgcagctgtcaagacagcatcatcctagctctcctctgtccccgactgccccgccgccggcatggtcgccaggcgttgaagcaaccgccttggcggggccgagacctcccctgggatgggggcaaaggagcgcgcgcctagacctcccgccgaaccggtcgcaccggcgtagacatgaccgcctcccacctccgtcggccagggaccagcgccatcgtagcgacctgcccagcaggagaaagtgttccgccaggtgacgtcttcatcatcggagttgtcgtcgaaggaggtcggcggagtatgcaacggcgtagggtcaatgacttcttctacgtggatgatgaccggataggtgagggccggcttctcccgcggcggggaaggtggtgtcgcgctcgtcccctcccgccatcgccctgcggccgggcgttccgggatttccacgtccagatggtgggaaaggtcggacggattcttgaaccaagcgaagagaccgaggcagcgcgcgtccgccgccgggatcagctcggcaagctgaccgtccaagctgttgaccagcttgtgcatggcttcctcctcccaggcgtgcgggggaaggccgtcgagggagatcttggtgaagaactggaaagccgaggcctccgcccagcagcatatgttccacggcttgaacgaaacaggcacctcattacagaacagcgcctttgaacaccgcaggaccgcctccttctccctctggttccgaaacgagatcaggaaatcctccgggcgcgtgacctccaccctgaagtaacgctgctgcacgcctgtgtgcagctcgattgcctccgcaagctctgccggcgagacgggcggccgtcccttgagcaccgacgccatcagggagagttcctggaggtacctctcatggcgctccatcccggaggtccaggacagcaccacccgccccctttctggccgcgagtcgggctcgccgatgcggtacttttccacgaactgcggcggcgtggccgcacagatctggtagccgcccaggttagcacccgccatggctatcaccgcgcccttttctgtcgcctgtggggccggcttgacgatcttcgacttcgccagcggcacctcccttaccaccacctgcttcaccttcccctaggcctgttgttctcttctcccagacggccacctctctgcgcccagacgcactgctctcccctggctctgccgccccggattgcccccagagacctccttcctctccggacacgcccacgctaggtgacccgggtaccagcaatggaaacaccttgtctctcccttgcagtcaagcttgcgatgacccaatcctaggcacttgaagcagcgccccagaagccagcgagggatctccttctccgaattgaatgccctgtcatggttgctgaactccttcctcggcttgaatgctctgtcatgtttgttggaggttgggtcacctgcccgcagtgaatgctccgtgctccccttccgccggacctccgtccaagctgcctcctcagcggcggcagggcccctacctttcttcacgacgtcgcgccacgagccgaactgcggcttggatggtggccggcgggcaccggaatggtggtccgccgggtggtaggtgagagcctcacgccccat
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| CDS seq | atggggcgtgaggctctcacctaccacccggcggaccaccattccggtgcccgccggccaccatccaagccgcagttcggctcgtggcgcgacgtcgtgaagaaaggtaggggccctgccgccgctgaggaggcagcttggacggaggtccggcggaaggggagcacggagcattcactgcgggcaggtgacccaacctccaacaaacatgacagagcattcaagccgaggaaggagttcagcaaccatgacagggcattcaattcggagaaggagatccctcgctggcttctggggcgctgcttcaagtgcctaggattgggtcatcgcaagcttgactgcaagggagagacaaggtgtttccattgctggtacccgggtcacctagcgtgggcgtgtccggagaggaaggaggtctctgggggcaatccggggcggcagagccaggggagagcagcgacagaaaagggcgcggtgatagccatggcgggtgctaacctgggcggctaccagatctgtgcggccacgccgccgcagttcgtggaaaagtaccgcatcggcgagcccgactcgcggccagaaagggggcgggtggtgctgtcctggacctccgggatggagcgccatgagaggtacctccaggaactctccctgatggcgtcggtgctcaagggacggccgcccgtctcgccggcagagcttgcggaggcaatcgagctgcacacaggcgtgcagcagcgttacttcagggtggaggtcacgcgcccggaggatttcctgatctcgtttcggaaccagagggagaaggaggcggtcctgcggtgttcaaaggcgctgttctgtaatgaggtgcctgtttcgttcaagccgtggaacatatgctgctgggcggaggcctcggctttccagttcttcaccaagatctccctcgacggccttcccccgcacgcctgggaggaggaagccatgcacaagctggtcaacagcttggacggtcagcttgccgagctgatcccggcggcggacgcgcgctgcctcggtctcttcgcttggttcaagaatccgtccgacctttcccaccatctggacgtggaaatcccggaacgcccggccgcagggcgatggcgggaggggacgagcgcgacaccaccttccccgccgcgggagaagccggccctcacctatccggtcatcatccacgtagaagaagtcattgaccctacgccgttgcatactccgccgacctccttcgacgacaactccgatgatgaagacgtcacctggcggaacactttctcctgctgggcaggtcgctacgatggcgctggtccctggccgacggaggtgggaggcggtcatgtctacgccgctgcggtggtgggggtcgttgacatggcagcggcggaccgggttctagaccgggctgacattgttgttcaagacatggaggcgggggaggtgttggcgtcacagccgcattcgccgacgttggttttgcaagcgccgggtgtgtggttctctccgcaagcggtgcaagcagtggagcaaccaggggccgacgtgggaatcgctaccccgctggcggcgcctgtggttgcaacggcaaaggcgcttatcgttctggacgacgactgcagctgggcgctcgtggccggtggtgtgtcgcctctttcaccgccgctccaactctccctggacgagttaaccggcggtgaactgtcggcgctcggcacggagaaggatggcgaccgtgctgagctcagtgatgaggatacgatggctgaggtgtcgctcgtggagcatgggtgcgagcggccagcattgaaggcgactggcgacgcgctgagctcagcgcaggagagcaggagtgatcgtgggtttgaatcggcggcaaaggcgggagagttccgtgtctatgtgcggaagcaggcccagaagaaaccgagccatgagcaacctgggacggaggggatcggcctcatgggcttggcaggccaggatctggggcaggctgacctgagacgggctgtggctggcctgggacaggaaatgtcggtgggccaagttgtatgtggcgaggacgagccacctcaggcccaccaagaagaagtggcccacagcgatgacgagcggccggtccaggaaactgagatcgagagcagcagggaggcgctcagcggagagatgatgctcccacctcccgcctcgccgtcgacggcactcgcccgcgcgcggccaacctcggaggggtcgccggcgaacacgccgctaccccccgaggcggaccagattcttcagggattcctcgcgtcggtcgctactgagcctcccccctccctgctcgggaggaggccgccggagtcagtccccaaatccaagccttgttggcgcaatgtgatccctgagtggttcacgccgtggcgcagcccacgtctgcaacaacaagggaacggagctcgtcgccattcaacttcaaaagcgcagaaggtaacgatgaagaagatgggcatcattgaagaggaagaagaagcggatcaagacaccttccagcagaacactaccgtgattgatcagccgttatcgacccagcacatgaaggtgctagcggagctgctggatgtggatgttgcgctggaggaagcagatgttccaccgccggacctggcttcgctggtggcggcgggggtggaatcccctgcttga
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| Protein seq | MGREALTYHPADHHSGARRPPSKPQFGSWRDVVKKGRGPAAAEEAAWTEVRRKGSTEHSLRAGDPTSNKHDRAFKPRKEFSNHDRAFNSEKEIPRWLLGRCFKCLGLGHRKLDCKGETRCFHCWYPGHLAWACPERKEVSGGNPGRQSQGRAATEKGAVIAMAGANLGGYQICAATPPQFVEKYRIGEPDSRPERGRVVLSWTSGMERHERYLQELSLMASVLKGRPPVSPAELAEAIELHTGVQQRYFRVEVTRPEDFLISFRNQREKEAVLRCSKALFCNEVPVSFKPWNICCWAEASAFQFFTKISLDGLPPHAWEEEAMHKLVNSLDGQLAELIPAADARCLGLFAWFKNPSDLSHHLDVEIPERPAAGRWREGTSATPPSPPREKPALTYPVIIHVEEVIDPTPLHTPPTSFDDNSDDEDVTWRNTFSCWAGRYDGAGPWPTEVGGGHVYAAAVVGVVDMAAADRVLDRADIVVQDMEAGEVLASQPHSPTLVLQAPGVWFSPQAVQAVEQPGADVGIATPLAAPVVATAKALIVLDDDCSWALVAGGVSPLSPPLQLSLDELTGGELSALGTEKDGDRAELSDEDTMAEVSLVEHGCERPALKATGDALSSAQESRSDRGFESAAKAGEFRVYVRKQAQKKPSHEQPGTEGIGLMGLAGQDLGQADLRRAVAGLGQEMSVGQVVCGEDEPPQAHQEEVAHSDDERPVQETEIESSREALSGEMMLPPPASPSTALARARPTSEGSPANTPLPPEADQILQGFLASVATEPPPSLLGRRPPESVPKSKPCWRNVIPEWFTPWRSPRLQQQGNGARRHSTSKAQKVTMKKMGIIEEEEEADQDTFQQNTTVIDQPLSTQHMKVLAELLDVDVALEEADVPPPDLASLVAAGVESPA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0025620 | OsCMeo_07g0025620.01 | Chr07 | 26712198 | 26715354 | - | NAM | ||
| CDS seq | atggggcgtgaggctctcacctaccacccggcggaccaccattccggtgcccgccggccaccatccaagccgcagttcggctcgtggcgcgacgtcgtgaagaaaggtaggggccctgccgccgctgaggaggcagcttggacggaggtccggcggaaggggagcacggagcattcactgcgggcaggtgacccaacctccaacaaacatgacagagcattcaagccgaggaaggagttcagcaaccatgacagggcattcaattcggagaaggagatccctcgctggcttctggggcgctgcttcaagtgcctaggattgggtcatcgcaagcttgactgcaagggagagacaaggtgtttccattgctggtacccgggtcacctagcgtgggcgtgtccggagaggaaggaggtctctgggggcaatccggggcggcagagccaggggagagcagcgacagaaaagggcgcggtgatagccatggcgggtgctaacctgggcggctaccagatctgtgcggccacgccgccgcagttcgtggaaaagtaccgcatcggcgagcccgactcgcggccagaaagggggcgggtggtgctgtcctggacctccgggatggagcgccatgagaggtacctccaggaactctccctgatggcgtcggtgctcaagggacggccgcccgtctcgccggcagagcttgcggaggcaatcgagctgcacacaggcgtgcagcagcgttacttcagggtggaggtcacgcgcccggaggatttcctgatctcgtttcggaaccagagggagaaggaggcggtcctgcggtgttcaaaggcgctgttctgtaatgaggtgcctgtttcgttcaagccgtggaacatatgctgctgggcggaggcctcggctttccagttcttcaccaagatctccctcgacggccttcccccgcacgcctgggaggaggaagccatgcacaagctggtcaacagcttggacggtcagcttgccgagctgatcccggcggcggacgcgcgctgcctcggtctcttcgcttggttcaagaatccgtccgacctttcccaccatctggacgtggaaatcccggaacgcccggccgcagggcgatggcgggaggggacgagcgcgacaccaccttccccgccgcgggagaagccggccctcacctatccggtcatcatccacgtagaagaagtcattgaccctacgccgttgcatactccgccgacctccttcgacgacaactccgatgatgaagacgtcacctggcggaacactttctcctgctgggcaggtcgctacgatggcgctggtccctggccgacggaggtgggaggcggtcatgtctacgccgctgcggtggtgggggtcgttgacatggcagcggcggaccgggttctagaccgggctgacattgttgttcaagacatggaggcgggggaggtgttggcgtcacagccgcattcgccgacgttggttttgcaagcgccgggtgtgtggttctctccgcaagcggtgcaagcagtggagcaaccaggggccgacgtgggaatcgctaccccgctggcggcgcctgtggttgcaacggcaaaggcgcttatcgttctggacgacgactgcagctgggcgctcgtggccggtggtgtgtcgcctctttcaccgccgctccaactctccctggacgagttaaccggcggtgaactgtcggcgctcggcacggagaaggatggcgaccgtgctgagctcagtgatgaggatacgatggctgaggtgtcgctcgtggagcatgggtgcgagcggccagcattgaaggcgactggcgacgcgctgagctcagcgcaggagagcaggagtgatcgtgggtttgaatcggcggcaaaggcgggagagttccgtgtctatgtgcggaagcaggcccagaagaaaccgagccatgagcaacctgggacggaggggatcggcctcatgggcttggcaggccaggatctggggcaggctgacctgagacgggctgtggctggcctgggacaggaaatgtcggtgggccaagttgtatgtggcgaggacgagccacctcaggcccaccaagaagaagtggcccacagcgatgacgagcggccggtccaggaaactgagatcgagagcagcagggaggcgctcagcggagagatgatgctcccacctcccgcctcgccgtcgacggcactcgcccgcgcgcggccaacctcggaggggtcgccggcgaacacgccgctaccccccgaggcggaccagattcttcagggattcctcgcgtcggtcgctactgagcctcccccctccctgctcgggaggaggccgccggagtcagtccccaaatccaagccttgttggcgcaatgtgatccctgagtggttcacgccgtggcgcagcccacgtctgcaacaacaagggaacggagctcgtcgccattcaacttcaaaagcgcagaaggtaacgatgaagaagatgggcatcattgaagaggaagaagaagcggatcaagacaccttccagcagaacactaccgtgattgatcagccgttatcgacccagcacatgaaggtgctagcggagctgctggatgtggatgttgcgctggaggaagcagatgttccaccgccggacctggcttcgctggtggcggcgggggtggaatcccctgcttga
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| Protein seq | MGREALTYHPADHHSGARRPPSKPQFGSWRDVVKKGRGPAAAEEAAWTEVRRKGSTEHSLRAGDPTSNKHDRAFKPRKEFSNHDRAFNSEKEIPRWLLGRCFKCLGLGHRKLDCKGETRCFHCWYPGHLAWACPERKEVSGGNPGRQSQGRAATEKGAVIAMAGANLGGYQICAATPPQFVEKYRIGEPDSRPERGRVVLSWTSGMERHERYLQELSLMASVLKGRPPVSPAELAEAIELHTGVQQRYFRVEVTRPEDFLISFRNQREKEAVLRCSKALFCNEVPVSFKPWNICCWAEASAFQFFTKISLDGLPPHAWEEEAMHKLVNSLDGQLAELIPAADARCLGLFAWFKNPSDLSHHLDVEIPERPAAGRWREGTSATPPSPPREKPALTYPVIIHVEEVIDPTPLHTPPTSFDDNSDDEDVTWRNTFSCWAGRYDGAGPWPTEVGGGHVYAAAVVGVVDMAAADRVLDRADIVVQDMEAGEVLASQPHSPTLVLQAPGVWFSPQAVQAVEQPGADVGIATPLAAPVVATAKALIVLDDDCSWALVAGGVSPLSPPLQLSLDELTGGELSALGTEKDGDRAELSDEDTMAEVSLVEHGCERPALKATGDALSSAQESRSDRGFESAAKAGEFRVYVRKQAQKKPSHEQPGTEGIGLMGLAGQDLGQADLRRAVAGLGQEMSVGQVVCGEDEPPQAHQEEVAHSDDERPVQETEIESSREALSGEMMLPPPASPSTALARARPTSEGSPANTPLPPEADQILQGFLASVATEPPPSLLGRRPPESVPKSKPCWRNVIPEWFTPWRSPRLQQQGNGARRHSTSKAQKVTMKKMGIIEEEEEADQDTFQQNTTVIDQPLSTQHMKVLAELLDVDVALEEADVPPPDLASLVAAGVESPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.244139 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45530 | RBH | 0.0 | 0.021702 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025790 | RBH | 0.0 | 0.0 | 0.120176 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026220 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0331400 | RBH | 0.004413 | 0.03901 | 0.0026515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0017530 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0489700 | SBH | 0.082252 | 1.067487 | 0.3445445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0016780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0016960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0016900 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026180 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025340 | SBH | 0.0 | 0.000000 | 0.504607 |
