Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0025490 | OGI:07075180 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:26614296-26617790 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccagaagagcagctgaattgctttgttcaagttgttgcctccgttgagagggtgggcaacgccctcggcacactggcgttcacctgggccaccgttgtcctccttggaggatacccaactagtatcacctgtgtggactttgcgtacgccacagcattgttcttcttagaagctgcaaggtatgcatcaatgatcagtcacatgtgataatgttagtcacaaacctgtgtactcatgttatcactacacttagcattcgtaagaccatgatcagattatctagtacttagcaatttatcaagtccaaaaggattgttgttcatttggttgatatatcatcctgtttttctcggtttccatgtgatgcaccgtgcatattttcaggatgttctgccccaacagatcagagtaccaacttttcttcaggactcgcggagctttgagacctttctcatggaatagagtgattgtggtgatatgtttgaataatgttggtttattcctcccaagcaccaaaagtaaagaattgtcggtttccatattgatgcttgttgctgccaccttgcctttcccaggagttcacaaacttaaaggtggtccattacgcaatgctatatcactattgagccccttggttgtaatggtgctgttgatcccctgtctatggtgcaaagatacaacaccagcaccaaaatggcatttgctactcctagctagggccttttacacactgttactggtcatggtgttgctactaacgatcagcaaattgcagtttccaagcatcgtcagactagttcataggcttgtcatccacaaatcattatcctgccaccaagtcagtttgttttcttgcatgtaccttgcagcagtgcccttggtgttcttttctccatttttgttagtaatgatggtattcgctctgttgacagcaatgtgtggcagtttacagattccagctgcagtcatgcgcatcgttattggatcgatctgccttttgcaccaagattattatggcaaaggtggccatgcaaataattctgacaagacaaacctcaagccaacacttaggctgcgttcgttgggtggagaaagagagagagtttgtttggttttccgcgcgcacgcttcccaaactactaaacggtgcgttttttacaaaaaatttctatagaaaagttgctttaaaaaatcatattaatctatttttaaaatttaaaatagttaatactcaattaatcatgagctaatggctcacctcgttttgcgtatcttcccaatctcctcaatccccttctcctcaaacactcccttaatgtcttctatggaatggtgctcggtcaagggatactatacattgtggctcgcataatggagtttttctcattctttcctcggagatcattgccccgtcgtggtgggttcaggggtcagcagggagtcaaatctcttgatatgtactacacacatgcatttgagaaatgtatgaacgctagcatccttgctccaaagaagttgaacctcaccaattttgccatggaatccctcgaatcagactcaaggaagaagcagctgtgcggggttcgaattctgtatagccttgtgaacagagagccctatgacaaacaagtcctgtcaaaagtcacaactccatgaagacggtcaccacactgatccaaatgctgggatggactaaccaagaagacaatcaaattagattgcttgccgcgaagattacagctgagcttgctagaggtctccagattgtcacaatccctggtgcaatgaactccatatcatcacttctggacaaccagaacaaacagcagatacaggaactcataattcagaaagacagtggtggtgaggagaattgctggatactcaaactttggcatcagatgactaaaaagtggtccattctagaggaggagcagtggacagaaactgatgttttcctggtacttggccttgtaactcttgagaggctagctacatatgatattgtcaactgcatggagatcagcagatcaatggacctcatcccaaagatcacagagttcacgagtaacaacagtgagagaatatgtgtcaatgagacaagtcagaaaatactgattgatttgtcattgaaggtgctgagaagactggcaagcattggtggggaaactggtataacattgaggcacaagatatcagaagatcccttcctacttggcaaccttgctgagattttggaggatagcaagagcagtcaggaactgaggaagttgacaatagatatccttataaaacttgccatggatgagactacaaagagagagattgggagcatccaggtgattgttcagatgttgatgtttgcattcactgcgcaagatgatctgccaggtgcatattctgactgctcgatgacaatgaaagcaggacaagcattgtcaatgctaacactagaaagtgcagacaactgctcagctatcatgaaggaacctgggcatagattctttaaggatgtggcaagaatgctagtgcatgacaacaggtacatacatgttgcagcaaatgtactgcaaaacctgtgcaaacactctagagttgagctaggagattcagttttggtggaactttccagtgtcctactagaggtgagatctccacctatgtatgataatatttggcatattttttttaaaaaaaaacaatgagaagcacaggagggctttggccccattctaaactacaactttctcgtcttccgttagcacgcttcccaaattgttaaacggtgtgtcttttgtacaagatttctatataaaagtttcttaaataaattaaataaatccaattttcaagcttgcaataattaatacttgactaatcatgcgttattgacttgtctcgattcgcatgccgcaaaaaaaggttgtcccaaacatattttgtatgaagaaggggctgagaaaccaaaattttagcttcttatttaggatatctgttttcaccagatatttgattctagagtctaacttacatgatgctgcgttataccgtctacaggtgttgggacaagtaatggatgcagagggaaaagaactcgaggtccttgttggcctcagttcacaaatatgcagggttagtcctaaaagcttttcaaaagcgctagaacagggtcagaaggaggcaagattcgtggagaagctaatcaatggactaaatgcgaatatgaaacccaatccacagtttccaggaatcagaagtgtgatagttgagcagtgtatatacatgatggagctgagctctcgttatgcaacatatttcagaaatcatgaattgatggaagcattaataagggtggagaagacaccatcaagggctgaaaaatacaggcttttcttgggcaacacagggctcattgagcacagagtgaatctgtcctctcttgtggagagggcaaaacagttgatggccgtgcattcaactcaacagccttga
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| CDS seq | atgccagaagagcagctgaattgctttgttcaagttgttgcctccgttgagagggtgggcaacgccctcggcacactggcgttcacctgggccaccgttgtcctccttggaggatacccaactagtatcacctgtgtggactttgcgtacgccacagcattgttcttcttagaagctgcaaggatgttctgccccaacagatcagagtaccaacttttcttcaggactcgcggagctttgagacctttctcatggaatagagtgattgtggtgatatgtttgaataatgttggtttattcctcccaagcaccaaaagtaaagaattgtcggtttccatattgatgcttgttgctgccaccttgcctttcccaggagttcacaaacttaaaggtggtccattacgcaatgctatatcactattgagccccttggttgtaatgacggtcaccacactgatccaaatgctgggatggactaaccaagaagacaatcaaattagattgcttgccgcgaagattacagctgagcttgctagaggtctccagattgtcacaatccctggtgcaatgaactccatatcatcacttctggacaaccagaacaaacagcagatacaggaactcataattcagaaagacagtggtggtgaggagaattgctggatactcaaactttggcatcagatgactaaaaagtggtccattctagaggaggagcagtggacagaaactgatgttttcctggtacttggccttgtaactcttgagaggctagctacatatgatattgtcaactgcatggagatcagcagatcaatggacctcatcccaaagatcacagagttcacgagtaacaacagtgagagaatatgtgtcaatgagacaagtcagaaaatactgattgatttgtcattgaaggtgctgagaagactggcaagcattggtggggaaactggtataacattgaggcacaagatatcagaagatcccttcctacttggcaaccttgctgagattttggaggatagcaagagcagtcaggaactgaggaagttgacaatagatatccttataaaacttgccatggatgagactacaaagagagagattgggagcatccaggtgattgttcagatgttgatgtttgcattcactgcgcaagatgatctgccaggtgcatattctgactgctcgatgacaatgaaagcaggacaagcattgtcaatgctaacactagaaagtgcagacaactgctcagctatcatgaaggaacctgggcatagattctttaaggatgtggcaagaatgctagtgcatgacaacaggtacatacatgttgcagcaaatgtactgcaaaacctgtgcaaacactctagagttgagctaggagattcagttttggtggaactttccagtgtcctactagaggtgttgggacaagtaatggatgcagagggaaaagaactcgaggtccttgttggcctcagttcacaaatatgcagggttagtcctaaaagcttttcaaaagcgctagaacagggtcagaaggaggcaagattcgtggagaagctaatcaatggactaaatgcgaatatgaaacccaatccacagtttccaggaatcagaagtgtgatagttgagcagtgtatatacatgatggagctgagctctcgttatgcaacatatttcagaaatcatgaattgatggaagcattaataagggtggagaagacaccatcaagggctgaaaaatacaggcttttcttgggcaacacagggctcattgagcacagagtgaatctgtcctctcttgtggagagggcaaaacagttgatggccgtgcattcaactcaacagccttga
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| Protein seq | MPEEQLNCFVQVVASVERVGNALGTLAFTWATVVLLGGYPTSITCVDFAYATALFFLEAARMFCPNRSEYQLFFRTRGALRPFSWNRVIVVICLNNVGLFLPSTKSKELSVSILMLVAATLPFPGVHKLKGGPLRNAISLLSPLVVMTVTTLIQMLGWTNQEDNQIRLLAAKITAELARGLQIVTIPGAMNSISSLLDNQNKQQIQELIIQKDSGGEENCWILKLWHQMTKKWSILEEEQWTETDVFLVLGLVTLERLATYDIVNCMEISRSMDLIPKITEFTSNNSERICVNETSQKILIDLSLKVLRRLASIGGETGITLRHKISEDPFLLGNLAEILEDSKSSQELRKLTIDILIKLAMDETTKREIGSIQVIVQMLMFAFTAQDDLPGAYSDCSMTMKAGQALSMLTLESADNCSAIMKEPGHRFFKDVARMLVHDNRYIHVAANVLQNLCKHSRVELGDSVLVELSSVLLEVLGQVMDAEGKELEVLVGLSSQICRVSPKSFSKALEQGQKEARFVEKLINGLNANMKPNPQFPGIRSVIVEQCIYMMELSSRYATYFRNHELMEALIRVEKTPSRAEKYRLFLGNTGLIEHRVNLSSLVERAKQLMAVHSTQQP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0025490 | OsCMeo_07g0025490.01 | Chr07 | 26614296 | 26617790 | + | NAM | ||
| CDS seq | atgccagaagagcagctgaattgctttgttcaagttgttgcctccgttgagagggtgggcaacgccctcggcacactggcgttcacctgggccaccgttgtcctccttggaggatacccaactagtatcacctgtgtggactttgcgtacgccacagcattgttcttcttagaagctgcaaggatgttctgccccaacagatcagagtaccaacttttcttcaggactcgcggagctttgagacctttctcatggaatagagtgattgtggtgatatgtttgaataatgttggtttattcctcccaagcaccaaaagtaaagaattgtcggtttccatattgatgcttgttgctgccaccttgcctttcccaggagttcacaaacttaaaggtggtccattacgcaatgctatatcactattgagccccttggttgtaatgacggtcaccacactgatccaaatgctgggatggactaaccaagaagacaatcaaattagattgcttgccgcgaagattacagctgagcttgctagaggtctccagattgtcacaatccctggtgcaatgaactccatatcatcacttctggacaaccagaacaaacagcagatacaggaactcataattcagaaagacagtggtggtgaggagaattgctggatactcaaactttggcatcagatgactaaaaagtggtccattctagaggaggagcagtggacagaaactgatgttttcctggtacttggccttgtaactcttgagaggctagctacatatgatattgtcaactgcatggagatcagcagatcaatggacctcatcccaaagatcacagagttcacgagtaacaacagtgagagaatatgtgtcaatgagacaagtcagaaaatactgattgatttgtcattgaaggtgctgagaagactggcaagcattggtggggaaactggtataacattgaggcacaagatatcagaagatcccttcctacttggcaaccttgctgagattttggaggatagcaagagcagtcaggaactgaggaagttgacaatagatatccttataaaacttgccatggatgagactacaaagagagagattgggagcatccaggtgattgttcagatgttgatgtttgcattcactgcgcaagatgatctgccaggtgcatattctgactgctcgatgacaatgaaagcaggacaagcattgtcaatgctaacactagaaagtgcagacaactgctcagctatcatgaaggaacctgggcatagattctttaaggatgtggcaagaatgctagtgcatgacaacaggtacatacatgttgcagcaaatgtactgcaaaacctgtgcaaacactctagagttgagctaggagattcagttttggtggaactttccagtgtcctactagaggtgttgggacaagtaatggatgcagagggaaaagaactcgaggtccttgttggcctcagttcacaaatatgcagggttagtcctaaaagcttttcaaaagcgctagaacagggtcagaaggaggcaagattcgtggagaagctaatcaatggactaaatgcgaatatgaaacccaatccacagtttccaggaatcagaagtgtgatagttgagcagtgtatatacatgatggagctgagctctcgttatgcaacatatttcagaaatcatgaattgatggaagcattaataagggtggagaagacaccatcaagggctgaaaaatacaggcttttcttgggcaacacagggctcattgagcacagagtgaatctgtcctctcttgtggagagggcaaaacagttgatggccgtgcattcaactcaacagccttga
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| Protein seq | MPEEQLNCFVQVVASVERVGNALGTLAFTWATVVLLGGYPTSITCVDFAYATALFFLEAARMFCPNRSEYQLFFRTRGALRPFSWNRVIVVICLNNVGLFLPSTKSKELSVSILMLVAATLPFPGVHKLKGGPLRNAISLLSPLVVMTVTTLIQMLGWTNQEDNQIRLLAAKITAELARGLQIVTIPGAMNSISSLLDNQNKQQIQELIIQKDSGGEENCWILKLWHQMTKKWSILEEEQWTETDVFLVLGLVTLERLATYDIVNCMEISRSMDLIPKITEFTSNNSERICVNETSQKILIDLSLKVLRRLASIGGETGITLRHKISEDPFLLGNLAEILEDSKSSQELRKLTIDILIKLAMDETTKREIGSIQVIVQMLMFAFTAQDDLPGAYSDCSMTMKAGQALSMLTLESADNCSAIMKEPGHRFFKDVARMLVHDNRYIHVAANVLQNLCKHSRVELGDSVLVELSSVLLEVLGQVMDAEGKELEVLVGLSSQICRVSPKSFSKALEQGQKEARFVEKLINGLNANMKPNPQFPGIRSVIVEQCIYMMELSSRYATYFRNHELMEALIRVEKTPSRAEKYRLFLGNTGLIEHRVNLSSLVERAKQLMAVHSTQQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 1.189320 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0648233 | RBH | 0.000000 | 0.514387 | 1.849488 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45410 | SBH | 0.000000 | 0.024805 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0648233 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025590 | RBH | 0.000000 | 0.0 | 1.798195 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025640 | RBH | 0.000000 | 0.000000 | 0.165392 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025560 | SBH | 0.049186 | 0.537736 | 0.329784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025730 | RBH | 0.000000 | 0.000000 | 1.116405 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0445800 | RBH | 0.5623025 | 0.595376 | 4.5065045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026180 | RBH | 0.000000 | 0.0 | 0.393191 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0457700 | RBH | 0.6137035 | 0.2399615 | 5.4276145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025510 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025690 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025510 | RBH | 1.166781 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025740 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025410 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025380 | RBH | 0.000000 | 0.0 | 0.201845 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025440 | RBH | 0.0 | 3.768082 | 1.102335 |
