Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0017630 | OGI:07058230 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:20447659-20449014 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacacattggcgcaatccgccggcgcgaaagagaacatcccgccgtcgaggtcgtagagcacgtgcaagtccatctgcatgacgttgccaatgatggagatcgacagtttctcgctcgccgggagcacgagcaagcactccaccgccgcgcggccctgcgagtccaccgccaccacgccgacgtagctccgccgccgcacggcgtactcagctccacccgcgaaccgcagcaccagcgtcggcacgggcacgccgctgccgccgccggcggcggtggcgtcgaagcacaggtcgaagccgaagcgcgtgccgttcaccgtcgtcgtcaggttggccgtcgccatctgcgacaggaacgcccgcttcaccatcgcgtagccctccttgacgaggtacgtgagcgtcgtgccggagtccacgatcgtgccgccgacgaggccggcgccggcgccgcgcgtgaagccgaacgtggtgctcgtcaccgggaggtccgtcgcgccgacggtgatgccggtgaggttgacgtagtagtacgaggagcttggcatctcggggttctcgaggagtggcgtggactggacgttcccgccggtgaccttggcgagggagccgaacagtatcgggctgtcgccggcgtcggcgtcggagcggaggcagtacgagaaccggccgacgccgacctgcgagacgagggacagcgggctgcggccgagccccacgatgcccgacgacgagttgccgacgccgttctccgtgctgcacccgaacgcgacgccggggaacgaggctccgccgacgtggagcgtctcggtggcgaggtagccggcggtgaagcccatgccgtaggggtagtagtagacgcagccggtggcgttgcacgtgaggtaggggctcgtgaggaactggcagagcgagctggcgcacgggagcttggagaaggtggaggagctcgccggctggaacggcggcgccggccgcgcggcgcactcggtgcacggcgcgcactgcgtccagatgaggctgctgccggtgtcggccaggacggagaaggtgacgggcggcgtgccgatggacaggttcatgttgtacgctcccgcgctgttgtcgagcagtgtctggaagctcaccgacgagttggtggtggtggtggtggtggccttgctgccggctgccgcggcggcgttgttggagaggaacgcgaggcggtggctgtcgcggcgtacagccgcggagtatttgccgggggagagctggtggatgcgagtgagagtggcgcggaagccatgaacgtcggtggcgagagtggtcggcgagaggaggacgagggctagcataactgcagcggtggctgccat
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| CDS seq | atggcagccaccgctgcagttatgctagccctcgtcctcctctcgccgaccactctcgccaccgacgttcatggcttccgcgccactctcactcgcatccaccagctctcccccggcaaatactccgcggctgtacgccgcgacagccaccgcctcgcgttcctctccaacaacgccgccgcggcagccggcagcaaggccaccaccaccaccaccaccaactcgtcggtgagcttccagacactgctcgacaacagcgcgggagcgtacaacatgaacctgtccatcggcacgccgcccgtcaccttctccgtcctggccgacaccggcagcagcctcatctggacgcagtgcgcgccgtgcaccgagtgcgccgcgcggccggcgccgccgttccagccggcgagctcctccaccttctccaagctcccgtgcgccagctcgctctgccagttcctcacgagcccctacctcacgtgcaacgccaccggctgcgtctactactacccctacggcatgggcttcaccgccggctacctcgccaccgagacgctccacgtcggcggagcctcgttccccggcgtcgcgttcgggtgcagcacggagaacggcgtcggcaactcgtcgtcgggcatcgtggggctcggccgcagcccgctgtccctcgtctcgcaggtcggcgtcggccggttctcgtactgcctccgctccgacgccgacgccggcgacagcccgatactgttcggctccctcgccaaggtcaccggcgggaacgtccagtccacgccactcctcgagaaccccgagatgccaagctcctcgtactactacgtcaacctcaccggcatcaccgtcggcgcgacggacctcccggtgacgagcaccacgttcggcttcacgcgcggcgccggcgccggcctcgtcggcggcacgatcgtggactccggcacgacgctcacgtacctcgtcaaggagggctacgcgatggtgaagcgggcgttcctgtcgcagatggcgacggccaacctgacgacgacggtgaacggcacgcgcttcggcttcgacctgtgcttcgacgccaccgccgccggcggcggcagcggcgtgcccgtgccgacgctggtgctgcggttcgcgggtggagctgagtacgccgtgcggcggcggagctacgtcggcgtggtggcggtggactcgcagggccgcgcggcggtggagtgcttgctcgtgctcccggcgagcgagaaactgtcgatctccatcattggcaacgtcatgcagatggacttgcacgtgctctacgacctcgacggcgggatgttctctttcgcgccggcggattgcgccaatgtgtga
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| Protein seq | MAATAAVMLALVLLSPTTLATDVHGFRATLTRIHQLSPGKYSAAVRRDSHRLAFLSNNAAAAAGSKATTTTTTNSSVSFQTLLDNSAGAYNMNLSIGTPPVTFSVLADTGSSLIWTQCAPCTECAARPAPPFQPASSSTFSKLPCASSLCQFLTSPYLTCNATGCVYYYPYGMGFTAGYLATETLHVGGASFPGVAFGCSTENGVGNSSSGIVGLGRSPLSLVSQVGVGRFSYCLRSDADAGDSPILFGSLAKVTGGNVQSTPLLENPEMPSSSYYYVNLTGITVGATDLPVTSTTFGFTRGAGAGLVGGTIVDSGTTLTYLVKEGYAMVKRAFLSQMATANLTTTVNGTRFGFDLCFDATAAGGGSGVPVPTLVLRFAGGAEYAVRRRSYVGVVAVDSQGRAAVECLLVLPASEKLSISIIGNVMQMDLHVLYDLDGGMFSFAPADCANV |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0017630 | OsCMeo_07g0017630.01 | Chr07 | 20447659 | 20449014 | - | NAM | ||
| CDS seq | atggcagccaccgctgcagttatgctagccctcgtcctcctctcgccgaccactctcgccaccgacgttcatggcttccgcgccactctcactcgcatccaccagctctcccccggcaaatactccgcggctgtacgccgcgacagccaccgcctcgcgttcctctccaacaacgccgccgcggcagccggcagcaaggccaccaccaccaccaccaccaactcgtcggtgagcttccagacactgctcgacaacagcgcgggagcgtacaacatgaacctgtccatcggcacgccgcccgtcaccttctccgtcctggccgacaccggcagcagcctcatctggacgcagtgcgcgccgtgcaccgagtgcgccgcgcggccggcgccgccgttccagccggcgagctcctccaccttctccaagctcccgtgcgccagctcgctctgccagttcctcacgagcccctacctcacgtgcaacgccaccggctgcgtctactactacccctacggcatgggcttcaccgccggctacctcgccaccgagacgctccacgtcggcggagcctcgttccccggcgtcgcgttcgggtgcagcacggagaacggcgtcggcaactcgtcgtcgggcatcgtggggctcggccgcagcccgctgtccctcgtctcgcaggtcggcgtcggccggttctcgtactgcctccgctccgacgccgacgccggcgacagcccgatactgttcggctccctcgccaaggtcaccggcgggaacgtccagtccacgccactcctcgagaaccccgagatgccaagctcctcgtactactacgtcaacctcaccggcatcaccgtcggcgcgacggacctcccggtgacgagcaccacgttcggcttcacgcgcggcgccggcgccggcctcgtcggcggcacgatcgtggactccggcacgacgctcacgtacctcgtcaaggagggctacgcgatggtgaagcgggcgttcctgtcgcagatggcgacggccaacctgacgacgacggtgaacggcacgcgcttcggcttcgacctgtgcttcgacgccaccgccgccggcggcggcagcggcgtgcccgtgccgacgctggtgctgcggttcgcgggtggagctgagtacgccgtgcggcggcggagctacgtcggcgtggtggcggtggactcgcagggccgcgcggcggtggagtgcttgctcgtgctcccggcgagcgagaaactgtcgatctccatcattggcaacgtcatgcagatggacttgcacgtgctctacgacctcgacggcgggatgttctctttcgcgccggcggattgcgccaatgtgtga
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| Protein seq | MAATAAVMLALVLLSPTTLATDVHGFRATLTRIHQLSPGKYSAAVRRDSHRLAFLSNNAAAAAGSKATTTTTTNSSVSFQTLLDNSAGAYNMNLSIGTPPVTFSVLADTGSSLIWTQCAPCTECAARPAPPFQPASSSTFSKLPCASSLCQFLTSPYLTCNATGCVYYYPYGMGFTAGYLATETLHVGGASFPGVAFGCSTENGVGNSSSGIVGLGRSPLSLVSQVGVGRFSYCLRSDADAGDSPILFGSLAKVTGGNVQSTPLLENPEMPSSSYYYVNLTGITVGATDLPVTSTTFGFTRGAGAGLVGGTIVDSGTTLTYLVKEGYAMVKRAFLSQMATANLTTTVNGTRFGFDLCFDATAAGGGSGVPVPTLVLRFAGGAEYAVRRRSYVGVVAVDSQGRAAVECLLVLPASEKLSISIIGNVMQMDLHVLYDLDGGMFSFAPADCANV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.310580 | 0.0 | 0.118027 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0533000 | RBH | 0.581278 | 0.084373 | 0.440057 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g34870 | RBH | 0.271333 | 0.056748 | 0.113279 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0533000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017650 | RBH | 0.072110 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017620 | RBH | 0.534450 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017680 | RBH | 0.0 | 0.0 | 0.834465 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0341000 | RBH | 0.1659445 | 0.020297 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0355600 | RBH | 0.084237 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017560 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017530 | RBH | 0.116915 | 0.0 | 0.264611 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017390 | RBH | 0.136934 | 0.0 | 0.276105 |
