Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0007740 | OGI:07019930 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:7317137-7319119 | ||||||||
| Gene Symbol | SPARK1, OsSPARK1 | ||||||||||
| DNA seq | ctaactgtcgcgccgcggcggcgtggccatcgcttcggtgttcgccacggatgacgatgtcgatgggagcgacgccgggtccggggtggcggtggatgatgacgtcgaggcctctgatcggtcggcgccgccgcctcgtgcggtatagtcggcgagcatggccttgagctcggcgagcacctcgcccatcgcggggcgctcgtgcttgtatgggcgcacgcaccggcacgcgagcgcgaacacggcgcgcacggtgggcctgtcccagtcggcgccgaggcgctcgtccaccatggactccgcggcggcgccggcctcgccgccggcctgggcgacggcccagtgcgcggcgtgcacgatggactcggcgccgcccgacggcgtgggcacgacggcgcgcatccccgtggcgagctcgagcagcacgacgccgaagctgtagacgtcgccggcctccgagacgtgccccgccgagaagctctccgggtcgacgtacccgcgcgtgccgcgcacctccgtcgacacgtgcgtcccgccctcgggcacgatccgcgacaccccgaagtccgacagcttcgccgcgccggactccgacagcagcacgttcgtcggcttcacgtcgcggtgcaccacggcgccctcccggaacccgtgcaggtaggccagcccctccgcgacgtccaccgccacctccagccgccgccgccacgccagctcgccctggaacagcgcgcgccacaggttgccgccgccgaggtactcgtacaccagcgcgtggtggtcgccgccgaggcagtagcccaccagcgtcgtcaggttccggtgccggagcttggcgagcacggccacctccgcgtagaactccgacaccttcttcgacctgtagatcttcttgatggccactcgctgccccgacgggagccgccccaggtacaccttgccggcgccgccgctgcccagcagaagcttctcgtcgtagccattggtggcatgcttcagctccgacttggtgaagatgtacaggccctcgcgcggcagcggcggcagcgacgccaccgactcgtcgtcgctgacgtcacctgccgtcgtcgtcgacctacgccggcgacggattgttacgattgccagcgcggcggaggcgaccgccacgacggccaccacaaccgcggacgccgagccgacggcgatggcgacggtgttccttctcgaggaggagcttgggagtgggcgcgatgcggtggtcggcgacgccggcggcggcggcggcgaggggacgaggtcgctggtgccgaggctgttgacgttctcgagcacctggagcatgcagagcgcgtaggcgcggaaccgctcgagcggcggcggcgcgcgggaccagacggcgacggtggcggccatcccgcacggcacgaactccttggtgcgcgcgctggccagcatctcgtaggtggtcgcgatcaccgcgccgcggcacgcggcgcagccggggtcgccgggcccgacccccggcgcgcgcgccgcgcccggcgcggcgcagagccgcgtcgcgttcggcagcgcgcgcggcgccatcgcgcgcacggcgtcgatggtggcgagctggcacggccgcgagcccgccgcgagcttccccgggtcaccggtgaggtcgcacgacccgttgtttgcgaggagcgacggcgacacgaggccggaggagagcagcctggcggcgaaggcgccggagcacgcggcggcgggctcggcggggaggaacgcggcgccggtgcggttggcgtggtcggcggcggcgaagatgtaggcggcgaacacgtaccagcagcagccggtggcggcctggccggcggtggcgttggcgtagcactcgcgcgggatcatccgcgtcgccgtggcgaggtcgtaggggcacgccgtggggcctctcgccggcgccggcgacgccgccgccacggcgagcgggaggaggaagacggcgaggcgaagcat
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| CDS seq | atgcttcgcctcgccgtcttcctcctcccgctcgccgtggcggcggcgtcgccggcgccggcgagaggccccacggcgtgcccctacgacctcgccacggcgacgcggatgatcccgcgcgagtgctacgccaacgccaccgccggccaggccgccaccggctgctgctggtacgtgttcgccgcctacatcttcgccgccgccgaccacgccaaccgcaccggcgccgcgttcctccccgccgagcccgccgccgcgtgctccggcgccttcgccgccaggctgctctcctccggcctcgtgtcgccgtcgctcctcgcaaacaacgggtcgtgcgacctcaccggtgacccggggaagctcgcggcgggctcgcggccgtgccagctcgccaccatcgacgccgtgcgcgcgatggcgccgcgcgcgctgccgaacgcgacgcggctctgcgccgcgccgggcgcggcgcgcgcgccgggggtcgggcccggcgaccccggctgcgccgcgtgccgcggcgcggtgatcgcgaccacctacgagatgctggccagcgcgcgcaccaaggagttcgtgccgtgcgggatggccgccaccgtcgccgtctggtcccgcgcgccgccgccgctcgagcggttccgcgcctacgcgctctgcatgctccaggtgctcgagaacgtcaacagcctcggcaccagcgacctcgtcccctcgccgccgccgccgccggcgtcgccgaccaccgcatcgcgcccactcccaagctcctcctcgagaaggaacaccgtcgccatcgccgtcggctcggcgtccgcggttgtggtggccgtcgtggcggtcgcctccgccgcgctggcaatcgtaacaatccgtcgccggcgtaggtcgacgacgacggcaggtgacgtcagcgacgacgagtcggtggcgtcgctgccgccgctgccgcgcgagggcctgtacatcttcaccaagtcggagctgaagcatgccaccaatggctacgacgagaagcttctgctgggcagcggcggcgccggcaaggtgtacctggggcggctcccgtcggggcagcgagtggccatcaagaagatctacaggtcgaagaaggtgtcggagttctacgcggaggtggccgtgctcgccaagctccggcaccggaacctgacgacgctggtgggctactgcctcggcggcgaccaccacgcgctggtgtacgagtacctcggcggcggcaacctgtggcgcgcgctgttccagggcgagctggcgtggcggcggcggctggaggtggcggtggacgtcgcggaggggctggcctacctgcacgggttccgggagggcgccgtggtgcaccgcgacgtgaagccgacgaacgtgctgctgtcggagtccggcgcggcgaagctgtcggacttcggggtgtcgcggatcgtgcccgagggcgggacgcacgtgtcgacggaggtgcgcggcacgcgcgggtacgtcgacccggagagcttctcggcggggcacgtctcggaggccggcgacgtctacagcttcggcgtcgtgctgctcgagctcgccacggggatgcgcgccgtcgtgcccacgccgtcgggcggcgccgagtccatcgtgcacgccgcgcactgggccgtcgcccaggccggcggcgaggccggcgccgccgcggagtccatggtggacgagcgcctcggcgccgactgggacaggcccaccgtgcgcgccgtgttcgcgctcgcgtgccggtgcgtgcgcccatacaagcacgagcgccccgcgatgggcgaggtgctcgccgagctcaaggccatgctcgccgactataccgcacgaggcggcggcgccgaccgatcagaggcctcgacgtcatcatccaccgccaccccggacccggcgtcgctcccatcgacatcgtcatccgtggcgaacaccgaagcgatggccacgccgccgcggcgcgacagttag
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| Protein seq | MLRLAVFLLPLAVAAASPAPARGPTACPYDLATATRMIPRECYANATAGQAATGCCWYVFAAYIFAAADHANRTGAAFLPAEPAAACSGAFAARLLSSGLVSPSLLANNGSCDLTGDPGKLAAGSRPCQLATIDAVRAMAPRALPNATRLCAAPGAARAPGVGPGDPGCAACRGAVIATTYEMLASARTKEFVPCGMAATVAVWSRAPPPLERFRAYALCMLQVLENVNSLGTSDLVPSPPPPPASPTTASRPLPSSSSRRNTVAIAVGSASAVVVAVVAVASAALAIVTIRRRRRSTTTAGDVSDDESVASLPPLPREGLYIFTKSELKHATNGYDEKLLLGSGGAGKVYLGRLPSGQRVAIKKIYRSKKVSEFYAEVAVLAKLRHRNLTTLVGYCLGGDHHALVYEYLGGGNLWRALFQGELAWRRRLEVAVDVAEGLAYLHGFREGAVVHRDVKPTNVLLSESGAAKLSDFGVSRIVPEGGTHVSTEVRGTRGYVDPESFSAGHVSEAGDVYSFGVVLLELATGMRAVVPTPSGGAESIVHAAHWAVAQAGGEAGAAAESMVDERLGADWDRPTVRAVFALACRCVRPYKHERPAMGEVLAELKAMLADYTARGGGADRSEASTSSSTATPDPASLPSTSSSVANTEAMATPPRRDS |
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| Function | Probable LRR receptor-like protein kinase At1g51890 [UniProtKB/Swiss-Prot:C0LGG6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0007740 | OsCMeo_07g0007740.01 | Chr07 | 7317137 | 7319119 | - | NAM | ||
| CDS seq | atgcttcgcctcgccgtcttcctcctcccgctcgccgtggcggcggcgtcgccggcgccggcgagaggccccacggcgtgcccctacgacctcgccacggcgacgcggatgatcccgcgcgagtgctacgccaacgccaccgccggccaggccgccaccggctgctgctggtacgtgttcgccgcctacatcttcgccgccgccgaccacgccaaccgcaccggcgccgcgttcctccccgccgagcccgccgccgcgtgctccggcgccttcgccgccaggctgctctcctccggcctcgtgtcgccgtcgctcctcgcaaacaacgggtcgtgcgacctcaccggtgacccggggaagctcgcggcgggctcgcggccgtgccagctcgccaccatcgacgccgtgcgcgcgatggcgccgcgcgcgctgccgaacgcgacgcggctctgcgccgcgccgggcgcggcgcgcgcgccgggggtcgggcccggcgaccccggctgcgccgcgtgccgcggcgcggtgatcgcgaccacctacgagatgctggccagcgcgcgcaccaaggagttcgtgccgtgcgggatggccgccaccgtcgccgtctggtcccgcgcgccgccgccgctcgagcggttccgcgcctacgcgctctgcatgctccaggtgctcgagaacgtcaacagcctcggcaccagcgacctcgtcccctcgccgccgccgccgccggcgtcgccgaccaccgcatcgcgcccactcccaagctcctcctcgagaaggaacaccgtcgccatcgccgtcggctcggcgtccgcggttgtggtggccgtcgtggcggtcgcctccgccgcgctggcaatcgtaacaatccgtcgccggcgtaggtcgacgacgacggcaggtgacgtcagcgacgacgagtcggtggcgtcgctgccgccgctgccgcgcgagggcctgtacatcttcaccaagtcggagctgaagcatgccaccaatggctacgacgagaagcttctgctgggcagcggcggcgccggcaaggtgtacctggggcggctcccgtcggggcagcgagtggccatcaagaagatctacaggtcgaagaaggtgtcggagttctacgcggaggtggccgtgctcgccaagctccggcaccggaacctgacgacgctggtgggctactgcctcggcggcgaccaccacgcgctggtgtacgagtacctcggcggcggcaacctgtggcgcgcgctgttccagggcgagctggcgtggcggcggcggctggaggtggcggtggacgtcgcggaggggctggcctacctgcacgggttccgggagggcgccgtggtgcaccgcgacgtgaagccgacgaacgtgctgctgtcggagtccggcgcggcgaagctgtcggacttcggggtgtcgcggatcgtgcccgagggcgggacgcacgtgtcgacggaggtgcgcggcacgcgcgggtacgtcgacccggagagcttctcggcggggcacgtctcggaggccggcgacgtctacagcttcggcgtcgtgctgctcgagctcgccacggggatgcgcgccgtcgtgcccacgccgtcgggcggcgccgagtccatcgtgcacgccgcgcactgggccgtcgcccaggccggcggcgaggccggcgccgccgcggagtccatggtggacgagcgcctcggcgccgactgggacaggcccaccgtgcgcgccgtgttcgcgctcgcgtgccggtgcgtgcgcccatacaagcacgagcgccccgcgatgggcgaggtgctcgccgagctcaaggccatgctcgccgactataccgcacgaggcggcggcgccgaccgatcagaggcctcgacgtcatcatccaccgccaccccggacccggcgtcgctcccatcgacatcgtcatccgtggcgaacaccgaagcgatggccacgccgccgcggcgcgacagttag
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| Protein seq | MLRLAVFLLPLAVAAASPAPARGPTACPYDLATATRMIPRECYANATAGQAATGCCWYVFAAYIFAAADHANRTGAAFLPAEPAAACSGAFAARLLSSGLVSPSLLANNGSCDLTGDPGKLAAGSRPCQLATIDAVRAMAPRALPNATRLCAAPGAARAPGVGPGDPGCAACRGAVIATTYEMLASARTKEFVPCGMAATVAVWSRAPPPLERFRAYALCMLQVLENVNSLGTSDLVPSPPPPPASPTTASRPLPSSSSRRNTVAIAVGSASAVVVAVVAVASAALAIVTIRRRRRSTTTAGDVSDDESVASLPPLPREGLYIFTKSELKHATNGYDEKLLLGSGGAGKVYLGRLPSGQRVAIKKIYRSKKVSEFYAEVAVLAKLRHRNLTTLVGYCLGGDHHALVYEYLGGGNLWRALFQGELAWRRRLEVAVDVAEGLAYLHGFREGAVVHRDVKPTNVLLSESGAAKLSDFGVSRIVPEGGTHVSTEVRGTRGYVDPESFSAGHVSEAGDVYSFGVVLLELATGMRAVVPTPSGGAESIVHAAHWAVAQAGGEAGAAAESMVDERLGADWDRPTVRAVFALACRCVRPYKHERPAMGEVLAELKAMLADYTARGGGADRSEASTSSSTATPDPASLPSTSSSVANTEAMATPPRRDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0227300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g12480 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0227300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0007880 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0007870 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039350 | RBH | 2.363169 | 11.447762 | 5.317787 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0007680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0007710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0118600 | RBH | 0.08386 | 0.783577 | 0.185176 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008200 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0119000 | RBH | 0.167185 | 0.3627175 | 0.138492 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0007670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0007680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0007690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0007920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G007820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007610 | RBH | 0.0 | 0.0 | 0.0 |
