Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0004350 | OGI:07011300 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:3912408-3917029 | ||||||||
| Gene Symbol | OsFbox345, Os_F0495 | ||||||||||
| DNA seq | atggcggaggagcggaggaggcggaagcgggaggaggaggaggaggcggaggagtgggagaggcggaagagggggaggaggaagaggaggaagaggaggaggaggcggggaggggaggaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcgtggcacgatgcaccgcggtgtcccgcgcctggcgcggggtcgccgccgacgaccgcctctgggcacccaaggtcccccctctctctctctttctctctcgttacagcctgcacggcgcctgttcgacgaattgccggcgaggggcctccgattcccctcacgggcggtggctactctcgtgtcttctgttaggatcgagcttatcgtattcgggagtggtgttgatttggagcttttatagaattctcgtttattgattatcaaattatggttgccaaaaagagaagagcgcacattcggctagtgtgttagtactgtttttggtacaaaggtcgttatatatataaacccaagaggctcgttgttgattgctcctgtgcccgtagcatggcgagataagacagagagagtacggcgtgtgacagacgtactgtacaaacttgttgtgacattgacatggtaggaaaacaagtacctttcccgacagggataacgatctttcttctattccccccaagagagacaaaattacgacaataagaaatgataatcacactgaatattttctatcattttgctctgtctattcctaaattttgagttgttgttcaatttgattttcaaccaatcttagaatatttcatattttaacaattgacggatctttgtatagagatgattgtgattttgtaaaaaatgttcatttttagtctgacttacattgaagatcctgaatttccataatatcaatatatataaaagtctgtgtattttagatagtcctttttttttgtaattttcttggattttattactcgtgccgatggacactcatgtcaaaggtaggttgggtgcctcatgtagtcatgtttatgtcaccttgagcagaaagccagaaaccatgagaaagaggaaacaaaacttaactaaattctcatgaactaaagaaagtacaacaacaaaaatagaagtattatagggattgatatgaaaaattaaaaccatcattaaagtcaatttgcttctgtccgtcttagaaactagggattgctttgcactgcaaatgttcatagagggaatatctataaaacatagaacactctttttataagcaataatctataatctctgtctcaaaatagattgctataatttaagacggaggaaataacgtgattactatgcggctgtcgacatgtacagagtgcactgatacacacacccatccatccaacccgtttcgtcttttgtggctccagacttccgagctaagcatcgcccataaaaagcaacccaacccacacatgcatgtgtccacgtgggcaccctggcacgctagctgccacgtaggaacacccctcttgccgccacccgctcctccgccactggatcgccagagctccccctcatccttccatccgtctgacaccctgcgcctctataaatgcgtgccccaacgaccttccccaaaaggcaagcgatctgcgccacggcaacggccccacctagctgagtagatcactcactcactcctcccctcctctcctctccactctgctctgctctgctgctcggctctgcttgtattcctcacacgagcgtttaatttagcattgactgctctcatgccctctgttaggatcaggatcatattggaggggatgttgatttcaagcaagcattcggctagtacagttaacagtcacacagtttggtaccaactaccaaggttattatctaaatcccaaaagggtaattgttgactcgtggaagtgcgagataagaagggatgttcggtgtgtgacagactcatgtgtacaaactttgtgtgacattgacatggtgggaaaaaaaacaattattctatcagacagggataaagttgtttctttgattccccgaaaagatacaaaatcgcagcaatgataaacgagacgctttgaaatattttctattagatagaacttttccaagtgtaattcttgtttttcttttaagtattgatcttttttatttttcgattaatcttggctgtcaatggtatcatagtattttgtgcacatttcatcttttaacaattgacatctctaggagtattttgtgcagtatatggacaatcgtgcatttctctgaaagtattaatttagtcttatccatattgattatcctgaatttccacgatatcaattaatttacataaaaaatcatatattttatttgtttatgtattgtcgtttttttgttttcaattttctaggatttaaacactcacagcaatgaaataaaagtcgctcatgactaatgtcaaaggtagttcaggtggctcatatttttgttaccgtaagcagacccatgaccatgaaacagtggaaaagacttaattcagctcaaatttagcttcagaatctgagtctccaatactcctattttgaagttacgagttcttgcattcatttaacaagggaatgcagatcccaaatgtaaactgagaattcttcattaaatatagagaggggagaaggggtgctatggttaataatactatttctttgctgacagtcacaagcaaatcttgaccattgttttatctgcagtgtgctgaattgatggcgggaaaggcacacattcctcgtttgactatgatacccactgcatcaaaattgtctacctattcaatggccatcgcggatggcaaacgggtaagtgctagcaaggcagcaatttactcttgtgatatttgttaaagatgcaatatatcaacaacattgagatggtgatgcactgtgttgatgtgctagtggtgctttaaccacaactaaacgaaaagataacctccggacttttggagtaatttgccgccattttcttatcttctttccagcaaccaaaacaatgagaattttatgctatagaaattttctcttattttcatagtttgtgaaacattggcatggggaagttctttgtggttaccaacttgatttatcctaacagaaaataaaatatctcaagaaagattatattattttggattgttctcttgttcagactcggatcacaaaagaggacctctgcgatcatgattgggaattccgtttcactatagtaagttttcgctaacctgtcatccaatctgcatggtttgagatatgtgtttatattagccggcatatcttaatgctagtggctgctactgcacaactgacttactagttttttagttcaaatggttttagtcaaccacacctgatggatgcatgggaatcatgagttcatgacaactgtcagcatctggtctagcttcttcagatgtcttagcttccaaatgcaatgagggagagttgatgcatatctcttcgtggtggtaattaaaggtcgtaaactttgattcattgatttgtctggtcaaggatgatatttgactattgatttttcttgagcatcacctaaaacatatatacaaaaactttgaaaaccatacttgtgttcgtctctcttacactaagcaaccgcatgatgatctgatgaatgaattattcatagcataaaatctgtgatgtatcatggccataaatttaaattcaactctccaccatgtgcagcatgcagttatctgctcaaaatttgtaatttgacgatatattgttaggcattaccagaaaaaaggcttaataagccaacacatttgttttagtttttttagtaagaactaaatctgctttgcaaatgaaatgtacaattatactccagatgagtaataccaaaatataaccattctacactttttgtaattatatgattaatcatgatgttcataatttctgtttcctttgcccgtgcaggcagcaccagaatattggagaaacctggatccatcatggaaacataccggtccaccaatgcgacgttacttccaccctgatggttaccacagcgcagatcctcatgatgctgtatggggtggccatgagtgcacgtacacgatcataacaagctttgctggtaatggatgtatcagggatcattatgtgaggatcaatcggtggccaccgatgaaagtttcaaggaaggaggattggagctgggagctatccaaccatctttaccgctacaacagcatccctgacactgacaagaagggatgtacaggtcctctgttccccgtttggtgaatgaatccacttctatggtagtagcagtgaccggtaatagtcgcgatctccaactcatagaaactggcctcggatcgttcctgaccctgaggaacgtgataacgagaggctctgtttggcagttatgagctatgaacaccaatggagattaagcttacttatgtggtatactggtatgtaacgtactcctatatagtactacatgatttcctgtgcgttgctgctggaattggtataaaacttatgtttgcaaatttgatgat
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| CDS seq | atggcggaggagcggaggaggcggaagcgggaggaggaggaggaggcggaggagtgggagaggcggaagagggggaggaggaagaggaggaagaggaggaggaggcggggaggggaggaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcgtggcacgatgcaccgcggtgtcccgcgcctggcgcggggtcgccgccgacgaccgcctctgggcacccaagtgtgctgaattgatggcgggaaaggcacacattcctcgtttgactatgatacccactgcatcaaaattgtctacctattcaatggccatcgcggatggcaaacggactcggatcacaaaagaggacctctgcgatcatgattgggaattccgtttcactatagcagcaccagaatattggagaaacctggatccatcatggaaacataccggtccaccaatgcgacgttacttccaccctgatggttaccacagcgcagatcctcatgatgctgtatggggtggccatgagtgcacgtacacgatcataacaagctttgctggtaatggatgtatcagggatcattatgtgaggatcaatcggtggccaccgatgaaagtttcaaggaaggaggattggagctgggagctatccaaccatctttaccgctacaacagcatccctgacactgacaagaagggatgtacaggtcctctgttccccgtttggtga
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| Protein seq | MAEERRRRKREEEEEAEEWERRKRGRRKRRKRRRRRGGEEDPVDVLGEEVMGRVMELLDARSVARCTAVSRAWRGVAADDRLWAPKCAELMAGKAHIPRLTMIPTASKLSTYSMAIADGKRTRITKEDLCDHDWEFRFTIAAPEYWRNLDPSWKHTGPPMRRYFHPDGYHSADPHDAVWGGHECTYTIITSFAGNGCIRDHYVRINRWPPMKVSRKEDWSWELSNHLYRYNSIPDTDKKGCTGPLFPVW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0004350 | OsCMeo_07g0004350.01 | Chr07 | 3912408 | 3917029 | + | NAM | ||
| CDS seq | atggcggaggagcggaggaggcggaagcgggaggaggaggaggaggcggaggagtgggagaggcggaagagggggaggaggaagaggaggaagaggaggaggaggcggggaggggaggaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcgtggcacgatgcaccgcggtgtcccgcgcctggcgcggggtcgccgccgacgaccgcctctgggcacccaagtgtgctgaattgatggcgggaaaggcacacattcctcgtttgactatgatacccactgcatcaaaattgtctacctattcaatggccatcgcggatggcaaacggactcggatcacaaaagaggacctctgcgatcatgattgggaattccgtttcactatagcagcaccagaatattggagaaacctggatccatcatggaaacataccggtccaccaatgcgacgttacttccaccctgatggttaccacagcgcagatcctcatgatgctgtatggggtggccatgagtgcacgtacacgatcataacaagctttgctggtaatggatgtatcagggatcattatgtgaggatcaatcggtggccaccgatgaaagtttcaaggaaggaggattggagctgggagctatccaaccatctttaccgctacaacagcatccctgacactgacaagaagggatgtacaggtcctctgttccccgtttggtga
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| Protein seq | MAEERRRRKREEEEEAEEWERRKRGRRKRRKRRRRRGGEEDPVDVLGEEVMGRVMELLDARSVARCTAVSRAWRGVAADDRLWAPKCAELMAGKAHIPRLTMIPTASKLSTYSMAIADGKRTRITKEDLCDHDWEFRFTIAAPEYWRNLDPSWKHTGPPMRRYFHPDGYHSADPHDAVWGGHECTYTIITSFAGNGCIRDHYVRINRWPPMKVSRKEDWSWELSNHLYRYNSIPDTDKKGCTGPLFPVW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.283275 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0170800 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07520 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0170800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004500 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004460 | RBH | 0.0 | 1.061604 | 0.628852 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004290 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004390 | RBH | 0.0 | 0.0 | 1.332238 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0062700 | RBH | 0.6031215 | 2.666527 | 5.382906 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004900 | RBH | 0.092114 | 0.0 | 0.121260 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0066100 | RBH | 0.7479065 | 3.499601 | 4.8849215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004380 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004370 | RBH | 0.180060 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004410 | RBH | 4.558597 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004490 | RBH | 0.000000 | 0.229814 | 0.454510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004360 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004530 | RBH | 0.0 | 0.000000 | 0.216846 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004330 | RBH | 0.0 | 0.000000 | 0.000000 |
