Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0001610 | OGI:07004080 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:1647242-1669414 | ||||||||
| Gene Symbol | PR1-73, OsPR1#073, OsPR1-73, PR1b, - | ||||||||||
| DNA seq | atggagaaaggagcgagctttgcagtggtgatggcggccatggcgatggttctggccatgacatcgacggcggcccaggcccagaccacggcggccgacatcgtcaacatccacaacgccgcccggagcgccgtcggcgtcgcggcgctgtcgtgggacgacaacctggcggcgtacgctcagggctacgcgaaccagcgcgccggcgactgcgcgctgcggcactccgaccgcaacaactaccagtacggcgagaacctgtcgtggaacccctccgtgcaggcgtggacggcggcgagctccgtcgaccagtgggtggcggagaagggctcctacgactacgccagcaacagctgcgtcggcggcgccatgtgcggccactacacgcaggtggtgtggcgcgacaccaccgccgtcggatgcgccgccgtcgcctgcaacgccaaccgaggcgtcttcttcatctgcacctacttccccgccggcaacgtccaaaaccagaggccgtactagctaccgtatacgtatacgtacgtaacgtattacgtatatgctatggtatatatattttgctactatacttatatattgtttgtacgtaatcgatctatagatatatatgcgcatatatgtgcgaactatattatatatgtatgttcgtatgtatgtatgcatatctgcatgcgtatataagtgtgtgtcggatggaataagtacatcatgatgcaagcgtattgagtatatctatacagatacaaatatatgtatccggtgtgtatttttattacaaattactcccaccgtctctaaatatttgatgccgttgactttttttaaacaTttttaaccgttcatcttattaaaaaaatcaagtaattgttaattcttttcctatcatttgattcattactaaatatacttttatgtatacatatagttttacatatttcacaaaagtttttgaataaaacgaatggttaaacatgtttaaaaaaaTtaatagcgtcaaatatttaggaacggagggagtactaaataaaggggtgtttgattttcatcacctaaggttactgcatatatttgattcgattatatgaagtcttacggactggtataaatatattacatggaaataatcatatttatacatgggatactattgttcttacactgatggagaaattatctttggtcagtcgaccagatttcacaatagtcccggttgtattaaaaaccaggattaaaaacatctttagtcccggtttgaaaactccaggtacttttcaatctttagtatcggttggtgttaccaaccagactaaaatctatctttagtcccggttggtaacaccaatcgggaaaaaagattcccatatgctttactcctggttggtgttaccaatcaggactaaagatagcaccaaccgggaaaaaagatcgacgcggagatcggagaggcatgcgcgatcggatcgaggtatctccttctctcctttaactcctctctcctcctctcttcaaccttaTCtcctctcctcaaccttatctcctcctctccttttaacttctctccacaaccttatcttcctctccttcttctctctaacaggctgagggcggtcgggcgcggaggcccggctggcgcggcgcgcggtgaggcggcggcagccggcacgagggcggcggggcacagcgggccggccggccggcgaggcggcggattttttTCctttttttttagaatctaagattgttgtatgatgtatttgattggatctgagattgttgtgtgatgtatttgatttgtgtgtgatgtgaatatttgataattttgtagaagttgtgatgtaattttttttttgagattttgtgatgtatttgagtatttgagatgatcgattgtggatttggaggcaatttgagaattattgatttgggattttggcgacgggatgggggtgaaatcaatatatattaaaaacaatgaagaaaataaaataataaagagcaaccggattagtctttttagtcccggttggtgttatcaacagggactaaaaatggatttttactcccaaTtttttcacccggactaaagatagcgatctttagtttcagatttgtagtcctggttggagaaccgagactacagggggttacgaactgagagtaaaaaccccttcttcaccagtgttaaaaaaaattcatgggatgtactatacgatcctatccatatattgtaacatttcctatagtccaagcacaagcaataaaaatacaaaatatttttttgggttttttaaaataaaaaactgaaaattcattttcacggagtgttctttaaatgagacgcctatgaaaatcaacttttatgttcagttcgaagttcatccgcgcaaatccttgatttttacatgcccttggttgtacatagtcacaggtggttggaataaatgccgcgaaaacaagttacggaccatacttacaaacgttttgtatactactgttaaagaattacgaatagtactattatattcttttatgatcagaggtgtacgtactataacaccgtacataagtaactacaataactattactacttaaaaacatatttttccagttcccagacgaacgacgacggcttcgcttgcaccccaacagcgatcttcacagacgggcgcgcgggcggtccgcctgaaaagatcattttcccatgcggagagctagacgcgctgcatgggaaaatacataattttcctgatttttgtcctagcttgcggacacactcgtgtgtaaaagggttgtgcatgctttgctacctactagtattatttatcaatacttgacatgcccgatgttctttttccagataatattgtgacatggatacatgcataggccagaaaattaaacatcaagttgctaaagactaattgactaaagtaacgtgtgccaagctagactaaagtagtgtggatccatgcatgcatatatggctagtttgctacaattgaccacttataattaactctaattatatttagtagttaggattaagaactacaagaggtataaaacagtacaagaccaagtcaaagtctttccaacctctctctcgcatgctgtacgtactataataccgtacgtacgtcttcgtgagttaggtaatgcggctacacgagagaaaaagatcaggaaaatcattggaaagttcatattgcaacgtgccaaatattaatattgcctctgtcctcaacgatatgtcttgtgcccccagctgggcatatatatataggatatatgatcttaattttaagagtaaatttcataaaactacagatactttgcacaatctatcacaaaactatatattttagaactagtttcacaaaactacagatttaatgtctttgtttatcacaaaactacaggtactttgaataatatatcacaaaactacagatttaagaacttgtttcacaaaactacaggtttaatatctttatttatcacaaaactacaaatctagtgtccccattctcacaaaactacaccttttgctaaaaggtgtagttttgtgagaatggggacactaaatctgtagttttgtgataaacgaagacattaaatgtgtagcactgtgataaacgaatacactaaatctatatttgtgtgaaacaggttcttaaatctgtagttttgtgatagattgtacaaaatacctgtagttttttgataaacgaagacactaaatctgtagttttgtgaaacaagctcttaaatccgtagttttgtgataaattatgcaaaatacctgtagttttgtgaaatttactctaattttaatcttgaaagaagctacaaaatggatggttgtgattaagcatagaaatgatccaatagctcctttattttttgtatgttgagctattggctataggatacataaataagcaagaaaaataaacatcaagttgcattcactacctgcccagatgaagaaagtatgcagctgtgtgccaaagactataaggcacagtgtgaatacaaccatggcaagtttgcgacaattgaccacttaattatatttagtggaattaattaacatctactagaagcaacgtgacagtgcaggaccaagtctaaagtctttccatcctctctcgtaatcgagctaagctatactagctctcatgatttagctgctataaatacctcagcaagcaacaagtctcagcacaagacattaattaattagcttgagaaactcatctgctggatcgagcttctctgttaattaatggcgtcgaaagcttttaattataaaaacttttgtgaaatatgtaaaattatatgcgtacataaaaatatatttaacaatgaatcaaatgatatgaaagaattaataattacttaaattttttgaataagacgaacggtcaaacatgtgctaaaaagtcaacggcgtcaaacatttcgaaacggagggagtacctagctagcttgaaatacaactatactatttggagtttatactatttagagtttaatctgttatgttttcaacatacaatatgtgttgaatttagacttgtatatttgtgaaatgatactcatacatatgctgttaaatttgtcaaaagtgtatatgactatttggatgacattttgatcttaacAaaaaaaccacaaatattagggaatgacctaatatcaaataattagaaggggtgaggcttcgaacataggttagtgtcggtgacatgggaccgggggtatcgtgactagaggcttgggcagccgcggtcacccacgtggcctgaccccctcgggggggtcgggcctgagggtgacgtggccacccctcccactgtctccccgaggggtcgggccgctcccgtttcggccccgagggctgcggcgccccgaccccctgtggtgttggcgtcacgtgtgtgggttaggtgagcacagcggcgctcacctaaccgcatttata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cgccggcgccccttttccgttttttggcttcgtcgctgatggttgctgctcctgctcgcctatggcattgcgcaatgcgaaggtgaagcgacggctagcggggtgatcgagacgaggaattaacgaagaaggcgaggcgtttttttcctaatggtgggctgagatgagaacttgccttgggctattgggcttaccactaccagggagatagaagagggttttgggggggggggggtcggcccaaatctaataggggggtgttggcccaccccggccccccctgtagcttcgccactggtgaatgtatctgatccaaacctcccaattggtttctttgaaaagagaaaacatggcagacaataagcacggttcgtgtgaggtgaatactctagccaactaaattGtttaaaccaattgctttggaatcgacgagcatgagatgcatcattcaatgggtactcatccaatataaattgatatgggccttcagatataTaaaatcttcgagcttcatcttgttgatcagcagggagtgcagagatttgaacacgtttacctgggtccctctcaaatgccgtagttacaattacttcttgttcagcttgcaaattttcctgatcagcaacttctatattggttgggctaggattttcaatttcaactgagacagccctagcaacaactggcttgtagaagcaatcaatcgttatcgttttcctcttcatcttggctgaaaTtaagatgggaaataacaaaactgagtactcataaactgattgaagtctagtggctacagcatacaagctacaaaactttgttgtattggggatttggaggagaaaaggagaactggagaaggaactcacctgaacggctgaacacccctgtcttctggactccggcggatggtgggctggtgcctggcggcgtccagtccggcctccaacgtgctcaacggcgagataggcgatcgctgatgaagggcgaaatcacacaaaagcttgccgccggcgccccttttccgttttttggcttcgtcgctgatggttgctgctcctgctcgcctatggcattgcgcaatgcgaaggtgaagcgacggctagcggggtgatcgagacgaggaattaacgaagaaggcgaggcgtttttttcctaatggtgggctgagatgagaacttgccttgggctattgggcttaccactatcagggagatagaagagggttttttttggggggggggggggcggtcggcccaaatctgataggggggtgttggcccaccccggcccccccttaagcttcgccactggctggatcggattgacgcatttaccgtttcacctggtatcattcttaaccagtgtgcatcggcgatgttagctcgatcggtcgatccaggtaagcagagacacaaccagcgagcattgtacgtttgtccgtacttaattagccatacgtgttgatcacccagtgatctccgcctataaatactgccgaactgcatgcgttaatcatcgcctctgcacagtacaggagtctagctagctagctaccaatagagatcgatcgatcagtagccattcaattcgtgaattaattcattattaggacctgaaaaactgatcaattggtgatacgtacgacactaccatgggtatggagatgagatcagtagcaaagatggtggtggccatggcggccctcgccgtgatcatggccaccaccaccacggcggcgcagcagcaattctcgaagcgcgagaaggaggtgttcgtgcagctccacaacaaggcccgggcggcggtgggcgtgggcaaggtggcgtggagcgacgtgctggcggcgaaagccctggagcacgcgagctactgccggaagcagcacatcccggggaagtacggcgagaacctgtggtggagcagcgtcggaggctcgacggggacgcccgccgaggcgatgagctactgggtgggcgagcggccgtactacgactaccgcagcaacagctgcgtcggcggccaccagtgtgggcactacacgcaggtggtgtggagccgcacggcgtacgtcggctgcgcccgcgtcacctgcaacaccaacaacggcatcggcaccatcatcgcgtgcaattactacccggctggaaacatctacaaccaaaggccctactaa
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| CDS seq | atggagaaaggagcgagctttgcagtggtgatggcggccatggcgatggttctggccatgacatcgacggcggcccaggcccagaccacggcggccgacatcgtcaacatccacaacgccgcccggagcgccgtcggcgtcgcggcgctgtcgtgggacgacaacctggcggcgtacgctcagggctacgcgaaccagcgcgccggcgactgcgcgctgcggcactccgaccgcaacaactaccagtacggcgagaacctgtcgtggaacccctccaaagcctttgccctcgtgctgctggcggcggcgacgctggccatggcggccagcacggcggcggcgcagagctcgccgcaggacttcctcgacgcccacaacgccgcccggcgcggcgagggcgccggcctccccgacgtggcgtggagcacgacgctgcaggcgttcgcggagagctacgtggcgcagctcgccgccgccaccacctgcagcctcgcgcactccaacagcgaggacctgggctacggcgagaacctgtacggcccggccgccgccggcagcagcgcggcgacggcggcggccgcggtcagcaaatggatggaggagaaggcggactacgtgtacagcagcaacacgtgcacgaggggggcgctgctggagtgcggccactacacgcaggtggtgtggcggagcacgacgtcgatcggctgcgcgagcgccgcctgcagcaacggcggcggcagatcagcagaagcaaagatgatggtggtggccatggcggctttcgccatgattgccatggccaccaccacgacggcccaagaattctcggcaaacgagaaggcggtcttcgtccagctccacaacaacgcccgggcggcggtgggcgtcgggccggtggcgtggaacgacgcgctggcggcgcaggccctgcagcacgcgcgctactgccagacgcagcacatcccggggccctacggcgagaacctgtgcgaggagctgaaaaactga
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| Protein seq | MEKGASFAVVMAAMAMVLAMTSTAAQAQTTAADIVNIHNAARSAVGVAALSWDDNLAAYAQGYANQRAGDCALRHSDRNNYQYGENLSWNPSKAFALVLLAAATLAMAASTAAAQSSPQDFLDAHNAARRGEGAGLPDVAWSTTLQAFAESYVAQLAAATTCSLAHSNSEDLGYGENLYGPAAAGSSAATAAAAVSKWMEEKADYVYSSNTCTRGALLECGHYTQVVWRSTTSIGCASAACSNGGGRSAEAKMMVVAMAAFAMIAMATTTTAQEFSANEKAVFVQLHNNARAAVGVGPVAWNDALAAQALQHARYCQTQHIPGPYGENLCEELKN |
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| Function | Pathogenesis-related protein PRB1-2 [UniProtKB/Swiss-Prot:P35792] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0001610 | OsCMeo_07g0001610.02 | Chr07 | 1661780 | 1669414 | + | NAM | ||
| CDS seq | atggagagatcagcatcagcaaagatgatggtggtggtcatggcggctttcgccatgattatcatggccacgaccacgacggcgcaacaattctcggaagacgagaaggcggccttcgtcaacctccacaacagcgcccgcgcggcggtgggcgtcgggccggtggcgtggaacgacgcgctggcggcgcaggccctgcagcacgcgcgctactgccagacgcagcacatcccggggccctacggcgagaacctgtggtggagctacggcgccggcaccaccgggacgccggccgacgccatgagctactggctcgccgagaaggcaaagtactactacgacagcaactactgctcggcgggcgagctcggctgcacgcactacacgcaggtggtgtggaggcgcacggcgtacgtcggctgcgcccgcgtcgcctgcaataccaacggcatcggcaccatcatcgcttgcaactacttcccgcgtgtagcaaagatggtggtggccatggcggccctcgccgtgatcatggccaccaccaccacggcggcgcagcagcaattctcgaagcgcgagaaggaggtgttcgtgcagctccacaacaaggcccgggcggcggtgggcgtgggcaaggtggcgtggagcgacgtgctggcggcgaaagccctggagcacgcgagctactgccggaagcagcacatcccggggaagtacggcgagaacctgtggtggagcagcgtcggaggctcgacggggacgcccgccgaggcgatgagctactgggtgggcgagcggccgtactacgactaccgcagcaacagctgcgtcggcggccaccagtgtgggcactacacgcaggtggtgtggagccgcacggcgtacgtcggctgcgcccgcgtcacctgcaacaccaacaacggcatcggcaccatcatcgcgtgcaattactacccggctggaaacatctacaaccaaaggccctactaa
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| Protein seq | MERSASAKMMVVVMAAFAMIIMATTTTAQQFSEDEKAAFVNLHNSARAAVGVGPVAWNDALAAQALQHARYCQTQHIPGPYGENLWWSYGAGTTGTPADAMSYWLAEKAKYYYDSNYCSAGELGCTHYTQVVWRRTAYVGCARVACNTNGIGTIIACNYFPRVAKMVVAMAALAVIMATTTTAAQQQFSKREKEVFVQLHNKARAAVGVGKVAWSDVLAAKALEHASYCRKQHIPGKYGENLWWSSVGGSTGTPAEAMSYWVGERPYYDYRSNSCVGGHQCGHYTQVVWSRTAYVGCARVTCNTNNGIGTIIACNYYPAGNIYNQRPY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0001610 | OsCMeo_07g0001610.01 | Chr07 | 1647242 | 1661779 | + | NAM | ||
| CDS seq | atggagaaaggagcgagctttgcagtggtgatggcggccatggcgatggttctggccatgacatcgacggcggcccaggcccagaccacggcggccgacatcgtcaacatccacaacgccgcccggagcgccgtcggcgtcgcggcgctgtcgtgggacgacaacctggcggcgtacgctcagggctacgcgaaccagcgcgccggcgactgcgcgctgcggcactccgaccgcaacaactaccagtacggcgagaacctgtcgtggaacccctccaaagcctttgccctcgtgctgctggcggcggcgacgctggccatggcggccagcacggcggcggcgcagagctcgccgcaggacttcctcgacgcccacaacgccgcccggcgcggcgagggcgccggcctccccgacgtggcgtggagcacgacgctgcaggcgttcgcggagagctacgtggcgcagctcgccgccgccaccacctgcagcctcgcgcactccaacagcgaggacctgggctacggcgagaacctgtacggcccggccgccgccggcagcagcgcggcgacggcggcggccgcggtcagcaaatggatggaggagaaggcggactacgtgtacagcagcaacacgtgcacgaggggggcgctgctggagtgcggccactacacgcaggtggtgtggcggagcacgacgtcgatcggctgcgcgagcgccgcctgcagcaacggcggcggcagatcagcagaagcaaagatgatggtggtggccatggcggctttcgccatgattgccatggccaccaccacgacggcccaagaattctcggcaaacgagaaggcggtcttcgtccagctccacaacaacgcccgggcggcggtgggcgtcgggccggtggcgtggaacgacgcgctggcggcgcaggccctgcagcacgcgcgctactgccagacgcagcacatcccggggccctacggcgagaacctgtgcgaggagctgaaaaactga
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| Protein seq | MEKGASFAVVMAAMAMVLAMTSTAAQAQTTAADIVNIHNAARSAVGVAALSWDDNLAAYAQGYANQRAGDCALRHSDRNNYQYGENLSWNPSKAFALVLLAAATLAMAASTAAAQSSPQDFLDAHNAARRGEGAGLPDVAWSTTLQAFAESYVAQLAAATTCSLAHSNSEDLGYGENLYGPAAAGSSAATAAAAVSKWMEEKADYVYSSNTCTRGALLECGHYTQVVWRSTTSIGCASAACSNGGGRSAEAKMMVVAMAAFAMIAMATTTTAQEFSANEKAVFVQLHNNARAAVGVGPVAWNDALAAQALQHARYCQTQHIPGPYGENLCEELKN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0001610 | OsCMeo_07g0001610.03 | Chr07 | 1654174 | 1654976 | + | IsoSeq | ||
| CDS seq | atggatggaggagaaggcggactacgtgtacagcagcaacacgtgcacgaggggggcgctgctggagtgcggccactacacgcaggtggtgtggcggagcacgacgtcgatcggctgcgcgagcgccgcctgcagcaacggcggcggcgtcatcatcagctgcaactattccccgcccggcaactggcccgatcagcgcccttactagcagactatatatatatt
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| Protein seq | MDGGEGGLRVQQQHVHEGGAAGVRPLHAGGVAEHDVDRLRERRLQQRRRRHHQLQLFPARQLARSAPLLADYIYI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0127700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0127700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001710 | RBH | 0.0 | 9.743071 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001720 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001650 | RBH | 0.000000 | 29.549721 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0024000 | RBH | 0.0495095 | 18.9901235 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0021600 | SBH | 0 | 0.2369055 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001770 | RBH | 0.0 | 2.521736 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001810 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001740 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001720 | SBH | 0.0 | 9.471693 | 0.0 |
