Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0030270 | OGI:06087160 | 7/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:30895155-30897954 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggttacaccgcctcctctagggggatgggacttcacccctggtgatcggattcgtgatgaagtcttctgcaggttctcttctcctgtgcatttctctcgtttcttctcCcgtcggccttttcggcttgtggtcgattttcctcgggcttcttttcgattgtgctcttcatctgttgggattgccctaagagcttgtatcggtggttctccgggtgatctatttgtttgtcatcaaaaggaccggagttactcatttttggtttgctctaaggccgtgggtatttggatctataatcttcgttcttttatttgcaaagattttcatgcccggttccatctttggagagatggtggccctaattggcagaaagaatggatgctctagtgcgctgaacagaattcggaatggaccctagtctccaggaaatctaagaagtttgattctcttcatagccattcttgaaaaagttctattaagactattattgctgttaagccgattaatcctcctaaagtttcttcttccaagttgcttaatctttctaaagtttctactgctaagttgattaatcctccaaaggtttcaactgttaataagtctagcaatttcaagcgccctacaactggttcttcaaagggtccgatttccaatgctgagtccttgaatgttgttcctgttaaatcagtctttgatcgtcttcgatttccggagatcgccgccggcaaagctccggcccgtgatcaggggttagtgatccgcctttcaaggccgctaatcaggATatggcaattttgaaacgccctatgatcccttctttttgtgatcgttgcttgatgcatggccatcgggaatttgaatgtgttaatagggtcagatgtgcttcctgtcacaaattggatcaccgggctttagcctgttggaacaaaaagaaggcccaagtctggaggcccaaaaaggattctatgcctgcggctaagaagtctattgtggaaagggcagttttagggaaagaaataatttgcttcaaaaatcaaggaagcccttcctcttcctctcaacagttgcagtctgtccctcttttgctctcgacctcttcgccgagtgctccaatggcggtggtgaaccttgatcctgcattttttctccctccgacgctgtagctccttgagccctgggatcatcagcttgagcgtgctgatctttgcctccaggaagatccccctaagcgcaatgaaggtatggctgtcgcttgcattgaacctccaccaactcctgagcaatatgagggtttcagacatctggtgattaactatgttcagaatgtgctgggctatcatgtgttagaagctagccgtcaccctattgagttcatgtatgttcgtgtagcttctgctctgcttagagacactctaatagctgggggtccttatgaagtggataatcagtttatgcttcgctttgttcctcatgaccttacttccagttgtcgcaactcccctttcacttcagagggatggataatgtttttggatttcccattggatttcaaaactcctgctattattgacaaagctgtctctctgtttgggaaagtgatcaaagttcagttagatgataatgtaaggggaagattaatggtaaaagctttgtactcttccactctggaggtccctagaagaattgttgttaaaagggccattgctttcggaggtgttggaagatcttggacggtctcagtctttctatgccatgaagaactacctgatgttatgcctggggatgaggatttacctccagtgaatcatattcccatccctgatccggtgcagctgctggcaccacaagtggatgcttttggtgataatatggaagaggatgctccagctgttgagcaaaattctcagcctcttagtgctgtctctgtggtggctggaaatcaaaatgttatgctgcagtctcagggctcaattactcttgagcaactcacatagcctcgctttctggttaatccattttttggaagatgttaaacgctctgaatgctgctctgtcaagctgggaagattacttgccaaaacctcaagttacaagtgctttcagtctgttgcctctttctcctcagtggtcaagggcagtgggtccatcccaagagcttcaaattatttcctactctttccctgttacccatattattcagtttgccctcttagcagctgttctgctggtggttgggaatgaaactgaggttgaacaggctgagggagatttgggacatgagtatatgaatgaggcccatattgaagatgctgaaatggttgagcccatttcctgtgtgctccctgaacaacaagttttacctcaggatccattccagcaaagtgcctcttcctgcctgccatctttgaagaaatccagaaagactaaagctaaaattgtggcaattgtggacactgatcgtaggagaaactccagaatcaataagctcacagggggttacatgtctcctgatcccaagtagggggttggtaaacccagggggaaaagtgctaaaaggcttaagcttctggcagaacaaagtggtataatctcctccctccaccctttacctcctgagttctttgagactgatgataatagtgactctgagagccctcctattgaatgctctattcagatgttgcagactatgggcactaatctttgtgggctgaaggaaaatgaagtttctactcaagttctgaccactccggctgggatggggagtggatctgctgctacttctactcaattgccatga
More
|
||||||||||
| CDS seq | atggttacaccgcctcctctagggggatgggacttcacccctggtgatcggattcgtgatgaagtcttctgcaggttctcttctcctgtgcatttctctctttctactgctaagttgattaatcctccaaaggtttcaactgttaataagtctagcaatttcaagcgccctacaactggttcttcaaagggtccgatttccaatgctgagtccttgaatgttgttcctgttaaatcagtctttgatcgtcttcgatttccggagatcgccgccggcaaagctccggcccgtgatcagggatgtgcttcctgtcacaaattggatcaccgggctttagcctgttggaacaaaaagaaggcccaagtctggaggcccaaaaaggattctatgcctgcggctaagaagtctattgtggaaagggcagttttagggaaagaaataatttgcttcaaaaatcaaggaagcccttcctcttcctctcaacagttgcagtctgtccctcttttgctctcgacctcttcgccgagtgctccaatggcggtgctccttgagccctgggatcatcagcttgagcgtgctgatctttgcctccaggaagatccccctaagcgcaatgaaggtatggctgtcgcttgcattgaacctccaccaactcctgagcaatatgagggtttcagacatctggtgattaactatgttcagaatgtgctgggctatcatgtgttagaagctagccgtcaccctattgagttcatgtatgttcgtgtagcttctgctctgcttagagacactctaatagctgggggtccttatgaagtggataatcagtttatgcttcgctttgttcctcatgaccttacttccagttgtcgcaactcccctttcacttcagagggatggataatgtttttggatttcccattggatttcaaaactcctgctattattgacaaagctgtctctctgtttgggaaagtgatcaaagttcagttagatgataatgtaaggggaagattaatggtaaaagctttgtactcttccactctggaggtccctagaagaattgttgttaaaagggccattgctttcggaggtgttggaagatcttggacggtctcagtctttctatgccatgaagaactacctgatgttatgcctggggatgaggatttacctccagtgaatcatattcccatccctgatccggtgcagctgctggcaccacaagtggatgcttttggtgataatatggaagaggatgctccagctgttgagcaaaattctcagcctcttagtgctgtctctgtggtggctggaaatcaaaattttgccctcttagcagctgttctgctggtggttgggaatgaaactgaggttgaacaggctgagggagatttgggacatgagtatatgaatgaggcccatattgaagatgctgaaatggttgagcccatttcctgtgtgctccctgaacaacaagttttacctcaggatccattccagcaaagtgcctcttcctgcctgccatctttgaagaaatccagaaagactaaagctaaaattgtggcaattgtggacactgatcgtaggagaaactccagaatcaataagctcacagggggttacatgtctcctgatcccaaggggaaaagtgctaaaaggcttaagcttctggcagaacaaagtggtataatctcctccctccaccctttacctcctgagttctttgagactgatgataatagtgactctgagagccctcctattgaatgctctattcagatgttgcagactatgggcactaatctttgtgggctgaaggaaaatgaagtttctactcaagttctgaccactccggctgggatggggagtggatctgctgctacttctactcaattgccatga
More
|
||||||||||
| Protein seq | MVTPPPLGGWDFTPGDRIRDEVFCRFSSPVHFSLSTAKLINPPKVSTVNKSSNFKRPTTGSSKGPISNAESLNVVPVKSVFDRLRFPEIAAGKAPARDQGCASCHKLDHRALACWNKKKAQVWRPKKDSMPAAKKSIVERAVLGKEIICFKNQGSPSSSSQQLQSVPLLLSTSSPSAPMAVLLEPWDHQLERADLCLQEDPPKRNEGMAVACIEPPPTPEQYEGFRHLVINYVQNVLGYHVLEASRHPIEFMYVRVASALLRDTLIAGGPYEVDNQFMLRFVPHDLTSSCRNSPFTSEGWIMFLDFPLDFKTPAIIDKAVSLFGKVIKVQLDDNVRGRLMVKALYSSTLEVPRRIVVKRAIAFGGVGRSWTVSVFLCHEELPDVMPGDEDLPPVNHIPIPDPVQLLAPQVDAFGDNMEEDAPAVEQNSQPLSAVSVVAGNQNFALLAAVLLVVGNETEVEQAEGDLGHEYMNEAHIEDAEMVEPISCVLPEQQVLPQDPFQQSASSCLPSLKKSRKTKAKIVAIVDTDRRRNSRINKLTGGYMSPDPKGKSAKRLKLLAEQSGIISSLHPLPPEFFETDDNSDSESPPIECSIQMLQTMGTNLCGLKENEVSTQVLTTPAGMGSGSAATSTQLP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0030270 | OsCMeo_06g0030270.01 | Chr06 | 30895155 | 30897954 | + | NAM | ||
| CDS seq | atggttacaccgcctcctctagggggatgggacttcacccctggtgatcggattcgtgatgaagtcttctgcaggttctcttctcctgtgcatttctctctttctactgctaagttgattaatcctccaaaggtttcaactgttaataagtctagcaatttcaagcgccctacaactggttcttcaaagggtccgatttccaatgctgagtccttgaatgttgttcctgttaaatcagtctttgatcgtcttcgatttccggagatcgccgccggcaaagctccggcccgtgatcagggatgtgcttcctgtcacaaattggatcaccgggctttagcctgttggaacaaaaagaaggcccaagtctggaggcccaaaaaggattctatgcctgcggctaagaagtctattgtggaaagggcagttttagggaaagaaataatttgcttcaaaaatcaaggaagcccttcctcttcctctcaacagttgcagtctgtccctcttttgctctcgacctcttcgccgagtgctccaatggcggtgctccttgagccctgggatcatcagcttgagcgtgctgatctttgcctccaggaagatccccctaagcgcaatgaaggtatggctgtcgcttgcattgaacctccaccaactcctgagcaatatgagggtttcagacatctggtgattaactatgttcagaatgtgctgggctatcatgtgttagaagctagccgtcaccctattgagttcatgtatgttcgtgtagcttctgctctgcttagagacactctaatagctgggggtccttatgaagtggataatcagtttatgcttcgctttgttcctcatgaccttacttccagttgtcgcaactcccctttcacttcagagggatggataatgtttttggatttcccattggatttcaaaactcctgctattattgacaaagctgtctctctgtttgggaaagtgatcaaagttcagttagatgataatgtaaggggaagattaatggtaaaagctttgtactcttccactctggaggtccctagaagaattgttgttaaaagggccattgctttcggaggtgttggaagatcttggacggtctcagtctttctatgccatgaagaactacctgatgttatgcctggggatgaggatttacctccagtgaatcatattcccatccctgatccggtgcagctgctggcaccacaagtggatgcttttggtgataatatggaagaggatgctccagctgttgagcaaaattctcagcctcttagtgctgtctctgtggtggctggaaatcaaaattttgccctcttagcagctgttctgctggtggttgggaatgaaactgaggttgaacaggctgagggagatttgggacatgagtatatgaatgaggcccatattgaagatgctgaaatggttgagcccatttcctgtgtgctccctgaacaacaagttttacctcaggatccattccagcaaagtgcctcttcctgcctgccatctttgaagaaatccagaaagactaaagctaaaattgtggcaattgtggacactgatcgtaggagaaactccagaatcaataagctcacagggggttacatgtctcctgatcccaaggggaaaagtgctaaaaggcttaagcttctggcagaacaaagtggtataatctcctccctccaccctttacctcctgagttctttgagactgatgataatagtgactctgagagccctcctattgaatgctctattcagatgttgcagactatgggcactaatctttgtgggctgaaggaaaatgaagtttctactcaagttctgaccactccggctgggatggggagtggatctgctgctacttctactcaattgccatga
More
|
|||||||
| Protein seq | MVTPPPLGGWDFTPGDRIRDEVFCRFSSPVHFSLSTAKLINPPKVSTVNKSSNFKRPTTGSSKGPISNAESLNVVPVKSVFDRLRFPEIAAGKAPARDQGCASCHKLDHRALACWNKKKAQVWRPKKDSMPAAKKSIVERAVLGKEIICFKNQGSPSSSSQQLQSVPLLLSTSSPSAPMAVLLEPWDHQLERADLCLQEDPPKRNEGMAVACIEPPPTPEQYEGFRHLVINYVQNVLGYHVLEASRHPIEFMYVRVASALLRDTLIAGGPYEVDNQFMLRFVPHDLTSSCRNSPFTSEGWIMFLDFPLDFKTPAIIDKAVSLFGKVIKVQLDDNVRGRLMVKALYSSTLEVPRRIVVKRAIAFGGVGRSWTVSVFLCHEELPDVMPGDEDLPPVNHIPIPDPVQLLAPQVDAFGDNMEEDAPAVEQNSQPLSAVSVVAGNQNFALLAAVLLVVGNETEVEQAEGDLGHEYMNEAHIEDAEMVEPISCVLPEQQVLPQDPFQQSASSCLPSLKKSRKTKAKIVAIVDTDRRRNSRINKLTGGYMSPDPKGKSAKRLKLLAEQSGIISSLHPLPPEFFETDDNSDSESPPIECSIQMLQTMGTNLCGLKENEVSTQVLTTPAGMGSGSAATSTQLP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g51540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0030110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015170 | RBH | 0.0 | 0.0 | 1.462826 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0029620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0014980 | SBH | 0.0 | 4.432735 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0014800 | SBH | 0.000000 | 0.026297 | 0.100565 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0014910 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015420 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015210 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015010 | SBH | 0.0 | 1.186708 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029970 | RBH | 0.0 | 0.0 | 0.0 |
