Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0029390 | OGI:06085580 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:30264112-30268074 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggaccaacggcggatcaaGcgagggcgccgcagatcgactggcggcacagcttctccccatcctttggtgctgcattgctggtatcatcgtcgtgtttcccgctgttggtgcgtgtctcacggaggtaaggtttgcagcgtgcataatgatgtgcggttgaagttgaactcagttttgtgttccttttttgatatttcgattttcttcttttcatagaaagaatggattggagtaaatcagcagcggtgtggattgtgctctgacctcggcaggggcggatacaagaacacagcgatgagatccggtgcggtttgtggcggaccaagcatgccggccgatggagatggttctctgcatctacgcattccccaccaacatgccgcccttcaggtacaaatcaagtctgataaaacactgccatccttcttgtgttacatgttctgtgttacatggtggcctcctcctccaccacagcggcggtgtcggcaaacagatttgagaggtaaaaacatcccttcttgtgttgctttacggccatatttgagaggagaatggcatgatgctgcagtttgatttcaccggctttcctgcttgccgtatttgtaatctcaactttcatttcaagtgattgttggggccaaacctatggtggctagtcgctgaggtggtgtcattaatggaggcaaagagtggcaagtggtgaccaaagcggaaggacctggtgtgttgcgcgtgcgccggccactggcggtgcgaggccacggcgacggtcatgctgccattgtccaagtatggctgctgaccaatttcttccctgaagtaggtgaggttagcccgataggaacacataccacctatattgtgatatttggagctagggcacattcagtcctgttatttgatctgtagcatcaaggttgtaaaattatcagttttgcagaggatttttggtcatcaaattggagttgatgatattttttgagacactgaattaactaatatcaaatatataatctggatttcccttcaactcaaagcttgttgttgtcttgttgtctgcgtgcatgctggggtggctcttctgcgggcgatcaaaagggcagtgacagcatgtattgacgaacgcaatgtgcttgctggccgaatagacatgaacacatatcactgagagggagtgaaacagtgttgacgagtagcctgcttttgggttagttcttgatcaagctaaaatgcacttctttttcttgatcggtataaagggcaccctttttttttcttgcagcattttcatatgcacccaatattgcccacacggccacaccaccatcatctataggcaagtagtacgttcatgtgcaaattttgcaggccagctggtagtcgtgacaccacgttccccagcgagctggtgtaggctggtgtacgatacccgcagcgagcatcggatttctgacggattgttctcgagctccaacatccggtgctcgagcccttgccgctgcctctcgttgccggccaccagctccctcatcttcaggaggtcctcacgggcctccgccaagtcacgtaccagctggtcaGcacgctggtttgctgacgacgctgccgccctggcctcctcgacctcgcggcctacgccccgagcaccggcctggaggaggcgctccatctccgcctggagctccccccaggtgagggcatcggtggacgggccccgagcagacacaaggttgacggcggggctactcgacgtcgcctcccggtccttagtagcgaccactacatctgtcgaggtcactgcaggggacgcactggaagccgcaccggtcccaccttgcgccgccttcgcctgcgccgccctatgaagagtttcctctttctcataaagctaggtgatcaagatttcgtgaatggaaaaacttcaagaacgtctacttacttctcgccgatcgtcactagtcactagcctttgccttcgctgaggtggggagacgcgtccgagtcctaagtaagatacgacggtgtgaggtccagtcactccgactacacgttaaaaaacaagagggaggctcaccgccgggtttggcgccttccgacgggtcccgagtacggaggagaattcctccccttcctcggaacgttgttgccactcgtggtagcagcagctgcaacgtcggacgcctcattggtgacgccctccttcaatgacgccgctgcctggtggtccgcgagtggtccgatgacgtccgcagagggagaacctacataacgtgaagtcacaacgcgatctcgaggagaaggatgtaaaggagtcatcgagtacacttacattaattgcagcgacgcgttcgaccggacccttctcacaaagggggaccgggatgtcgctcgccgctgagggagcgctgatcatcacctggccgacaagctgtcccacggtgtcgctgtccagacctgtaaatcgaggacgagaactcgataagccaggagaaacagacgtactcgaagtaaaattcgaaatgcaagaaaaaataccccgaggagaaacccgggtcacgtcctctagcccagagtagtcaaaggccgcatgggcgcgggcctggagcggttggatccgcctacctacgaagtcggcagcgacttcgtaccccgacaacccctgtgttcggaggtcatcgatgatgtcgatgaaagactggagggagggagtcagggcgggtttggcggtccactctgggattttgtctggctgctcttcagggacaacaaggacgggatccgagttttctatctaaatatagaaccatctcgcccaccatttgctgcgaaaagaggggcaccggaaggggatgtaacgcgacttcaggcgatctcgaagtcggaacccaacacatccagataccctgttgggttccatccagcgcaactcatagtaaaagcggaagagatcaaggaaaggctctaccccaatgtaggcctcgcaaagataagagaaaatgctaaggaacacgatggaattgggattcaagtgaagcaaagaaaggccatagaagttcaaaacgagaagaagaaattcggaaggtggaggaagaaaaccgcaagaaatataatcttcgaccgcaaccatacggcccaagataggttcGggttcaatacctcctgtctccctctgcatggtcccacgaccagggagggcgccgtccctcaccgtcaccgatcaccgcaaaagaaccagcaaagatctaaacccaactccgtctgcttcgcgacatgtataaaaaaaaggattcatcacatgtataacaagagggagcaagtaagtaaaacaaaatattcttccctagaagttagcatacaaatagcaacagttgccTGtgtgtgtgtgtgtgtgtttttataggttgtcagtatAAGaaataacacaagtaCTctgacacctaggtattgcttacttagatGtctgctgcactgcaagtgccaaaatcggccaattcaagttatacacaaacaaacatttgagcttttgtggacttagtgcatgaattagagtacaattaagaatggtagaaatgtgaatcaattcaatccttacaacacacaacttggatacagatatcatgatttcgataggattAaattttctctcgggagcaagagaaggcacctacctcggtagcgaggccggtgtgttgaagtcgggctcccctgcagcgaggccgatgaccagctcgccggcctgccgcaacgtcgtggcctggtctgtgatggccatgttcttggacgaccggagcgccctcatcgttgggctgatggatgtgtccaccgcctccgccctcaccaccgccgccattctggccctccccgccgccggtctcttcctggacaccctgcaagaaccaagaaccaaaagatatccctcaccgtcaccgatcaccgcaaaagaaccagcaaagatctaa
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| CDS seq | atgggaccaacggcggatcaaGcgagggcgccgcagatcgactggcggcacagcttctccccatcctttggtgctgcattgctgaaagaatggattggagtaaatcagcagcggtgtggattgtgctctgacctcggcaggggcggatacaagaacacagcgatgagatccggtgcggtttgtggcggaccaagcatgccggccgatggagatggttctctgcatctacgcattccccaccaacatgccgcccttcagcggaaggacctggtgtgttgcgcgtgcgccggccactggcggtgcgaggccacggcgacggtcatgctgccattgtccaaagaaggcacctacctcggtagcgaggccggtgtgttgaagtcgggctcccctgcagcgaggccgatgaccagctcgccggcctgccgcaacgtcgtggcctggtctgtgatggccatgttcttggacgaccggagcgccctcatcgttgggctgatggatgtgtccaccgcctccgccctcaccaccgccgccattctggccctccccgccgccggtctcttcctggacaccctgcaagaaccaagaaccaaaagatatccctcaccgtcaccgatcaccgcaaaagaaccagcaaagatctaa
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| Protein seq | MGPTADQARAPQIDWRHSFSPSFGAALLKEWIGVNQQRCGLCSDLGRGGYKNTAMRSGAVCGGPSMPADGDGSLHLRIPHQHAALQRKDLVCCACAGHWRCEATATVMLPLSKEGTYLGSEAGVLKSGSPAARPMTSSPACRNVVAWSVMAMFLDDRSALIVGLMDVSTASALTTAAILALPAAGLFLDTLQEPRTKRYPSPSPITAKEPAKI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0029390 | OsCMeo_06g0029390.01 | Chr06 | 30264112 | 30268074 | + | NAM | ||
| CDS seq | atgggaccaacggcggatcaaGcgagggcgccgcagatcgactggcggcacagcttctccccatcctttggtgctgcattgctgaaagaatggattggagtaaatcagcagcggtgtggattgtgctctgacctcggcaggggcggatacaagaacacagcgatgagatccggtgcggtttgtggcggaccaagcatgccggccgatggagatggttctctgcatctacgcattccccaccaacatgccgcccttcagcggaaggacctggtgtgttgcgcgtgcgccggccactggcggtgcgaggccacggcgacggtcatgctgccattgtccaaagaaggcacctacctcggtagcgaggccggtgtgttgaagtcgggctcccctgcagcgaggccgatgaccagctcgccggcctgccgcaacgtcgtggcctggtctgtgatggccatgttcttggacgaccggagcgccctcatcgttgggctgatggatgtgtccaccgcctccgccctcaccaccgccgccattctggccctccccgccgccggtctcttcctggacaccctgcaagaaccaagaaccaaaagatatccctcaccgtcaccgatcaccgcaaaagaaccagcaaagatctaa
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| Protein seq | MGPTADQARAPQIDWRHSFSPSFGAALLKEWIGVNQQRCGLCSDLGRGGYKNTAMRSGAVCGGPSMPADGDGSLHLRIPHQHAALQRKDLVCCACAGHWRCEATATVMLPLSKEGTYLGSEAGVLKSGSPAARPMTSSPACRNVVAWSVMAMFLDDRSALIVGLMDVSTASALTTAAILALPAAGLFLDTLQEPRTKRYPSPSPITAKEPAKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.649474 | 0.000000 | 3.272556 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50510 | SBH | 0.044067 | 0.403190 | 0.083065 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029430 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029230 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0029410 | SBH | 0.000000 | 0.905914 | 3.278390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0479600 | RBH | 0.1816655 | 0.2222325 | 0.9318235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0028760 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0463500 | RBH | 1.159823 | 5.785796 | 5.5706155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0029320 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0029420 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028950 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0029620 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029140 | RBH | 0.0 | 0.486105 | 0.448807 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029260 | RBH | 0.000000 | 0.000000 | 0.000000 |
