Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0028680 | OGI:06084090 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:29803868-29806216 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacagtcaacaagattgatgggtggggttcaatcttccatttgcacaagcacAaaaATGAGCATATCCTATGATGATAGTTGTACACATCTAACAAATGCCAGCTTATCTCTGAATACTCTGCTGGAGATGATGCACAATACTCTCCTATCTGCCATGCAGAAAACCATGCTAATCTTGCTAGGTTAGTGAGAATCAAGCTACTCATGCTACAAAATTCCACACGGCCGGTCATCTGGTGTTTCCCTTTCATGTACCAGATCATGCTGAACTATGCTTTTGTATGTGTCCTTTTAGCTTGCGACTTTGGCAAAGGCATGTCCTGATGCTCACTCATTTGCTGATATTTCGCAGCCAAGACATCATCAAATGCTTTCTGAAGTGCAGCCTTTGCAACCTTGTAAACTTCTGGTGACATGGCTCCTCTCATTCCGTATGTCAAACCGTCgagagagagatcgttgtaccaagcaactaggcgctcaggaaagctaactccagtctccaacgatcgctcgtctggtacaacactactcacagcatccatcgtccacctcttcatgatgtattcctccggtagattccgaaccccgaccatgaagaagattcttagcacatgcctgcataatataccagcgtactcaaacttgcaacatgtacactctgctttcctgtccagctggttgaaagagactatatagccccggccattttcttcctcactggccacattgtacttgaggataactccatcctcaattttatcagcatgatagcctagcgattcgataaattcctcctgaaatatgtcaaacactgcccttgtatagatggccgcagcctgcctttcaattacagaaggagttttcagggtaggctttgaatatgctgtcacaaagtttgcttgagcttccttctcgaaactcaacgccatcacttgatcaaacctagagataagaacaagcagtggagtcttcatgttgaaatgcgtcttaaaaaacttgttcagcctctcagatctttgcgacttgagtaactctggaaagaaggatcccttctgatacacccaagcccattgctgccgagtgtcatacaacgactgaagccaagtgttctcctcgagattatacttatggatgacatagtcccaccgagcctgaaactcctcaattgtctcagccccaaagacacattccctcagatcagctttcaggttgatgtgctgtatatacacagcagataacttctgcttacataggctcaaaatgttccgctggcagaaacgatggcgggtgttgggcaacaccctcgcaattcctgcttccatcgccttaccctggtctgtcaccagcagatcaggttggcggccacccattgcagcaagccatgtatcaaacaaccaggtgtatgaactctttgtctcatccatcagcagacagcacccgaatatgatcccctgcaaatgatggttgattccccggaacaccgcgaacggcatcatgtacttggtcttcctgtatgtggtatcaaatgtcactgcatctccaaagctcttgtatgccatccttgcctttgcatcagcccagaacacattggtcacgcaattgccgctatctacctgcatcgcgtagaagaatcccgggctctcggcctgcatcttcctgaggtaatcgagcaaatcttgcacctcggcacgcaccccagctggattcgctctgacgagcctattgcagaaggatggccctccattgggcgccccattgcccactgcagcaggagctccggtgggttcgtccgagggttcggtggcggcttgggtaggttcatccaatgctgcggcgtgctctccggcgagaccatcggactcaccggcgggaggagggcgggggcagagcgggagcgagacggggtggacgtggtgggcgacgaacttggtgacgacccagcgcaaggggggctccttcttggtgacctcgcacatggccatgcacccctcccggatgatgaggcgcttccgccgcctcttcccggcggcggcctccgactccgtgaggtcgtcgtgcctggtggggtggaacccctcgcgggtgcagacgaagcggcgcatgatgacggagtcgtcgcggcgggagcggcgggacttgtcggtgcgcacggcgaaCccggcgcggtcggcgtaggcgcagtagaactccctggccgcctccgacgtcgggaactccatccccaccgacggcggctcgcctgccgccgccgccgccgcggcggaagcgccggcgctagcgaggccgagacgcagccccagctcctcctcctcgtcgtccgcttcgccgtggcgatgcccctccat
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| CDS seq | atggaggggcatcgccacggcgaagcggacgacgaggaggaggagctggggctgcgtctcggcctcgctagcgccggcgcttccgccgcggcggcggcggcggcaggcgagccgccgtcggtggggatggagttcccgacgtcggaggcggccagggagttctactgcgcctacgccgaccgcgccggGttcgccgtgcgcaccgacaagtcccgccgctcccgccgcgacgactccgtcatcatgcgccgcttcgtctgcacccgcgaggggttccaccccaccaggcacgacgacctcacggagtcggaggccgccgccgggaagaggcggcggaagcgcctcatcatccgggaggggtgcatggccatgtgcgaggtcaccaagaaggagccccccttgcgctgggtcgtcaccaagttcgtcgcccaccacgtccaccccgtctcgctcccgctctgcccccgccctcctcccgccggtgagtccgatggtctcgccggagagcacgccgcagcattggatgaacctacccaagccgccaccgaaccctcggacgaacccaccggagctcctgctgcacacatcaacctgaaagctgatctgagggaatgtgtctttggggctgagacaattgaggagtttcaggctcggtgggactatgtcatccataagtataatctcgaggagaacacttggcttcagtcgttgtatgacactcggcagcaatgggcttgggtgtatcagaagggatccttctttccagagttactcaagtcgcaaagatctgagaggctgaacaagttttttaagacgcatttcaacatgaagactccactgcttgttcttatctctaggtttgatcaagtgatggcgttgagtttcgagaaggaagctcaagcaaactttgtgacagcatattcaaagcctaccctgaaaactccttctgtaattgaaaggcaggctgcggccatctatacaagggcagtgtttgacatatttcaggaggaatttatcgaatcgctaggctatcatgctgataaaattgaggatggagttatcctcaagtacaatgtggccagtgaggaagaaaatggccggggctatatagtctctttcaaccagctggacaggaaagcagagtgtacatgttgcaagtttgagtacgctggtatattatgcaggcatgtgctaagaatcttcttcatggtcggggttcggaatctaccggaggaatacatcatgaagaggtggacgatggatgctgtgagtagtgttgtaccagacgagcgatcgttggagactggagttagctttcctgagcgcctagttgcttggtacaacgatctctctctcGACGGTTTGACATACGGAATGAGAGGAGCCATGTCACCAGAAGTTTACAAGGTTGCAAAGGCTGCACTTCAGAAAGCATTTGATGATGTCTTGGCTGCGAAATATCAGCAAATGAGTGAGCATCAGGACATGCCTTTGCCAAAGTCGCAAGCTAAAAGGACACATACAAAAGCATAG
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| Protein seq | MEGHRHGEADDEEEELGLRLGLASAGASAAAAAAAGEPPSVGMEFPTSEAAREFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDLTESEAAAGKRRRKRLIIREGCMAMCEVTKKEPPLRWVVTKFVAHHVHPVSLPLCPRPPPAGESDGLAGEHAAALDEPTQAATEPSDEPTGAPAAHINLKADLRECVFGAETIEEFQARWDYVIHKYNLEENTWLQSLYDTRQQWAWVYQKGSFFPELLKSQRSERLNKFFKTHFNMKTPLLVLISRFDQVMALSFEKEAQANFVTAYSKPTLKTPSVIERQAAAIYTRAVFDIFQEEFIESLGYHADKIEDGVILKYNVASEEENGRGYIVSFNQLDRKAECTCCKFEYAGILCRHVLRIFFMVGVRNLPEEYIMKRWTMDAVSSVVPDERSLETGVSFPERLVAWYNDLSLDGLTYGMRGAMSPEVYKVAKAALQKAFDDVLAAKYQQMSEHQDMPLPKSQAKRTHTKA |
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| Function | Protein FAR1-RELATED SEQUENCE 9 [UniProtKB/Swiss-Prot:Q9SZL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0028680 | OsCMeo_06g0028680.01 | Chr06 | 29803868 | 29806216 | - | NAM | ||
| CDS seq | atggaggggcatcgccacggcgaagcggacgacgaggaggaggagctggggctgcgtctcggcctcgctagcgccggcgcttccgccgcggcggcggcggcggcaggcgagccgccgtcggtggggatggagttcccgacgtcggaggcggccagggagttctactgcgcctacgccgaccgcgccggGttcgccgtgcgcaccgacaagtcccgccgctcccgccgcgacgactccgtcatcatgcgccgcttcgtctgcacccgcgaggggttccaccccaccaggcacgacgacctcacggagtcggaggccgccgccgggaagaggcggcggaagcgcctcatcatccgggaggggtgcatggccatgtgcgaggtcaccaagaaggagccccccttgcgctgggtcgtcaccaagttcgtcgcccaccacgtccaccccgtctcgctcccgctctgcccccgccctcctcccgccggtgagtccgatggtctcgccggagagcacgccgcagcattggatgaacctacccaagccgccaccgaaccctcggacgaacccaccggagctcctgctgcacacatcaacctgaaagctgatctgagggaatgtgtctttggggctgagacaattgaggagtttcaggctcggtgggactatgtcatccataagtataatctcgaggagaacacttggcttcagtcgttgtatgacactcggcagcaatgggcttgggtgtatcagaagggatccttctttccagagttactcaagtcgcaaagatctgagaggctgaacaagttttttaagacgcatttcaacatgaagactccactgcttgttcttatctctaggtttgatcaagtgatggcgttgagtttcgagaaggaagctcaagcaaactttgtgacagcatattcaaagcctaccctgaaaactccttctgtaattgaaaggcaggctgcggccatctatacaagggcagtgtttgacatatttcaggaggaatttatcgaatcgctaggctatcatgctgataaaattgaggatggagttatcctcaagtacaatgtggccagtgaggaagaaaatggccggggctatatagtctctttcaaccagctggacaggaaagcagagtgtacatgttgcaagtttgagtacgctggtatattatgcaggcatgtgctaagaatcttcttcatggtcggggttcggaatctaccggaggaatacatcatgaagaggtggacgatggatgctgtgagtagtgttgtaccagacgagcgatcgttggagactggagttagctttcctgagcgcctagttgcttggtacaacgatctctctctcGACGGTTTGACATACGGAATGAGAGGAGCCATGTCACCAGAAGTTTACAAGGTTGCAAAGGCTGCACTTCAGAAAGCATTTGATGATGTCTTGGCTGCGAAATATCAGCAAATGAGTGAGCATCAGGACATGCCTTTGCCAAAGTCGCAAGCTAAAAGGACACATACAAAAGCATAG
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| Protein seq | MEGHRHGEADDEEEELGLRLGLASAGASAAAAAAAGEPPSVGMEFPTSEAAREFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDLTESEAAAGKRRRKRLIIREGCMAMCEVTKKEPPLRWVVTKFVAHHVHPVSLPLCPRPPPAGESDGLAGEHAAALDEPTQAATEPSDEPTGAPAAHINLKADLRECVFGAETIEEFQARWDYVIHKYNLEENTWLQSLYDTRQQWAWVYQKGSFFPELLKSQRSERLNKFFKTHFNMKTPLLVLISRFDQVMALSFEKEAQANFVTAYSKPTLKTPSVIERQAAAIYTRAVFDIFQEEFIESLGYHADKIEDGVILKYNVASEEENGRGYIVSFNQLDRKAECTCCKFEYAGILCRHVLRIFFMVGVRNLPEEYIMKRWTMDAVSSVVPDERSLETGVSFPERLVAWYNDLSLDGLTYGMRGAMSPEVYKVAKAALQKAFDDVLAAKYQQMSEHQDMPLPKSQAKRTHTKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.233581 | 0.000000 | 1.560948 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0597800 | SBH | 0.999009 | 1.999418 | 1.365252 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49550 | RBH | 0.198600 | 0.033537 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0597800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028690 | RBH | 0.309155 | 0.0 | 1.145900 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028550 | RBH | 0.065594 | 0.0 | 0.288338 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0028250 | RBH | 0.036403 | 0.027265 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028750 | RBH | 1.609565 | 0.0 | 1.740520 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0472100 | RBH | 3.2818215 | 4.3943135 | 8.4960155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0028100 | RBH | 0.148767 | 0.082025 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0352000 | SBH | 4.3751825 | 4.1850795 | 11.5239815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028640 | RBH | 0.042506 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028710 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028290 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028940 | RBH | 0.000000 | 0.0 | 0.315494 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028570 | RBH | 0.121156 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028440 | RBH | 0.080443 | 0.454839 | 1.036855 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028550 | RBH | 0.0 | 0.000000 | 1.605574 |
