Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0028320 | OGI:06083440 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:29571812-29576581 | ||||||||
| Gene Symbol | ALAD, HEMB, OsALAD, OsHEMB | ||||||||||
| DNA seq | GGgggtccagtaaaaactgcgtctcgcgtttgtctgctctgctcttccatgttcgctgcaaagtgcaatgccattgatctttgatctttctcattgctcaggctgccggccattaccatttcgccaaaccagcgcgacagctgacgcagagccgcgctggtcgctgctgattaattagagggttgattgtttgagaggtcagagagcttggtttacctttgtgtgtgtgtggcttgagatctgaatcaatggcgttttttctgctcatgtatcattgtgatctactgttggggcttgtgcctgtgtttcttgcacttgcatcatcatcatcatctgttcactagcccctaagattacttaataccagtagcttacactcattagtagtacaaaattgctcaggtgggcagtttgagattcttccggttgtaccgtagttccacaacctgcctgtgcttgattactttgtttcagaatccagatagagaatgagatgcacagaattgcagattatattatttcctcaccgcaaattacacaccaattagaggcactgtcatacaaaaaacattattccagaatgatatttgcaaagctagcactaattactgactacacaaatgctctctatagagtgcaaaacgagcctcacatgatgatgacctggggacatgcaaaagtttcagagatggctgggttttagctgctcagcttttttcagattcagagttgacctgctagttggatcgcatgccgcacagcacgttggcggcctgacgcgcgaaatacgtcaggatgatgtcagcgccggctcgcctcaggcacatgagcgactccatcatcaccttctcttcgtcgatcatgttcagtgctcctccagctttgatcatggagtactctccagagacctggatgattaattttaacaaagcccgagattgtgagaggcccatatcaaagcccaacacttttgagattaattagaaaacaagcagaggtatatgtgtgacctatatgacatttcagatcaaagatcaaactgtacagggcgttgatgaccaagaatcttttcttaagataacaacAaatcattttttttAaaaaaagatataatcaatttggtgttttgagtatacaaacagttgatatctagtcagcttgttaagaaccaaggaacgatgatgctatctagagcaggttttggtggtctctataagatgcaagtatggacatcacataatgcacaggatggatgaaagatcaaggttcaactttctcctgtaatattgatatgcaagtattttatttgtaagaggtaccatagcaatgcatgaaccaggagttggaagtggctcaaactgaagaaaaagtaaacatgaaggactctgatatgaataagaggaaagattcttgtgggcgcatgaactatctgatgaactagtgaggcgtggagcaactggaagtctggaactgaattatggcatgctagtgcgaatgctaacatgagttcatcaatggtaatggatctagacagtagacaaggactacctaaTttttttcagggaagttggaaacagttaagaaaagggcagggattggaaacaataaagaaaaaggggctgaaaaggcagaactgattagcccaataaacgaacctgatatgcagcgattggcaatgctgaattgtccctaagaagacggatgacatccaagtatggcaatccaggttttacctgtcaaacggggatcgtacttttagaaccaacatgtAaataagctatcttggtaatacggcactgttatgcaaatcgagacaattaccagaagaatatcagctccttctgcctcatctgcagcagtttctagaagcgcttctctgtagttagctgggttcatCtggtaacttcagaatgaaatgaaaatgatgaatttagatattaagcaactaaacagtatgctagatggaaatagtagattcagtgcaagttccatacgtcttcttgtccccaaatcttggatttgaatccaaagcttctcggaatGggccataaaacgaactggcgtacctgcatAagcatagttgacatatgcattatttaacttacaagaaggttcagtgctatgggatactagaaataatatgatggaatcagtgacataggtatgtactttgcagtataggacataatggagacatcatggaaaccctcagcatccaaagcagcacgtattgctccAacacggccatccatcatgtcactagggctaactacatcagcaccagcacgtgcctattgagacagacagtttctatgttactcaactattgcacttgtgaaggtacttgatcaagatAaaaaacagaatataaagagaactagagaagagacagacctgtgaaacagcctgcttgcacagttgataaactgtttcatcattcataattactcctggtacgagatgcaaacaaattgacaatcagggtgggaccacaaaaaaatgtatggtaaatcatacgactcagctaagtacttggatcagaaaatagaaatgaaaattgctaatttgagctataatacattataaaaaataaaaTtatagactctagcatcaccacccaacataatccgaaaaccacattgacgccatcagtggtagttctcacttctcagaaattataattatgacagtgattactgaagaggagaaattgtgaatcaactagccaattacagctggcaactgatcttcaggtatatagggccttgaaagaaaaggttAgtgtgggtaactgggtatggagatgcatcgtttgcaacaTtttgtaggaaaaaggaggaacacctagtttcattgtggagtggccaaaaccgaccagtttattacacaaaacctagactagctggttatatccagtttaataccagttgtagaaaccgtcattattatatatttatatgcatggagatatcttgattattcttgaatatcAgcgtttttcagagtaaccaacatattccccatgctatcatcaaaacacaagcagtggataaaaacatgccatatgtttctcgctctaaaagcagtgcaaggtcaaaaggtgaccattttccttaccatcttccctgacaatgccatcatgaccatcagatgaataagggtccagagcaacatccgtgtagacaacctaaatcagacatattattagcagcaaagatgatagcaattaaagtaaaggccacaatatagacttatacattcaaattcaatgagggacatgttacttacaatgtcagggaatttatccttgagcaggcgaatagtccgtggaaccaaaccattatcattgtatgcctcatctccagattgagactgaaggaacaaagagtattaagtcaactcaagatattaatacacatgaaacagaaaatgaattatattcgTtgaaataccttcaatgcatcaggaacttttggaaacagcacaaaactgttaacaccaacatcacgagacttgtagacctgcaagttatcatatggaacacattacatcaagcctgaagactggtagctacttaagagcttaacactattgatccaagcaatatgaaaatgcacatggattatcttcaacagaatcactaaaaatctaaatgcatgacaagtgataaacatttttttttagataattcccagtactctgaatacctcatcaagaagcccatgcctccaaccaagcctatagcacccaggcatagctccaataggagcatcatcttcccctgcagatcatcacaaaacgagctcaatctatcaaaatctaattgtgtgtgttcaccattcatgtcagtggatttaatcacacaccttcatggatgaacagcgggagcaccaaattggcaggtgagatggtggtctcctggaatgcggccctaagagcaggcgacctgcggttgcgacgagggcgctttgtcaagtcctgaacacacatcaaacaggtccaaaattcagtcctctgaaatcataccacaaaccacaaacgacattgcaaatccatccattggggggcttacaagaggcctgatctgaggtgttccttcgggagccttgggtctgaccaacggcgggggagccgggaatctcccggccacggcgtcggcctcgcactcctcgatggtcctccccgacggcgccctgaccgccggcgccgcctcctgctCgctgctgaccctcacggccacggaacgcatccttggcccggttcttggcacggcggagcagcccccgaacgccgcgtggccgtggcagctcctgccctggagcatctgcacgttggccggggagaaggagacggtggacgccatggcctagctgcaacgtccacaccaaccaaaacggattccgcagacatggtcaatttccactctacaattggagcAaaaattgatcttggaaagagcacaaggggaagattggattgagttcggctttgaaattttgaagttcgccaattcgggattgaCtagagattgaattgagcttgacgggttcttttcttgcaaatcttgtAGAagaagaagaagaagatgagatgaggtggcgaccgtggcacacgtacctggaggctgtggagaagaagatgaggaggagatgatgcggccacagcagcagagagaggggagagttttcGgagaggaggaattcttgtggcctgagttctcccgatggcgacgcccaccttagcagactagaggcttgcgtttctgtctcc
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| CDS seq | atggcgtccaccgtctccttctccccggccaacgtgcagatgctccagggcaggagctgccacggccacgcggcgttcgggggctgctccgccgtgccaagaaccgggccaaggatgcgttccgtggccgtgagggtcagcagcGagcaggaggcggcgccggcggtcagggcgccgtcggggaggaccatcgaggagtgcgaggccgacgccgtggccgggagattcccggctcccccgccgttggtcagacccaaggctcccgaaggaacacctcagatcaggcctcttgacttgacaaagcgccctcgtcgcaaccgcaggtcgcctgctcttagggccgcattccaggagaccaccatctcacctgccaatttggtgctcccgctgttcatccatgaaggggaagatgatgctcctattggagctatgcctgggtgctataggcttggttggaggcatgggcttcttgatgaggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcctgatgcattgaagtctcaatctggagatgaggcatacaatgataatggtttggttccacggactattcgcctgctcaaggataaattccctgacattgttgtctacacggatgttgctctggacccttattcatctgatggtcatgatggcattgtcagggaagatggagtaattatgaatgatgaaacagtttatcaactgtgcaagcaggctgtttcacaggcacgtgctggtgctgatgtagttagccctagtgacatgatggatggccgtgtTggagcaatacgtgctgctttggatgctgagggtttccatgatgtctccattatgtcctatactgcaaagtacgccagttcgttttatggccCattccgagaagctttggattcaaatccaagatttggggacaagaagacttaccaGatgaacccagctaactacagagaagcgcttctagaaactgctgcagatgaggcagaaggagctgatattcttctggtaaaacctggattgccatacttggatgtcatccgtcttcttagggacaattcagcattgccaatcgctgcatatcaggtctctggagagtactccatgatcaaagctggaggagcactgaacatgatcgacgaagagaaggtgatgatggagtcgctcatgtgcctgaggcgagccggcgctgacatcatcctgacgtatttcgcgcgtcaggccgccaacgtgctgtgcggcatgcgatccaactag
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| Protein seq | MASTVSFSPANVQMLQGRSCHGHAAFGGCSAVPRTGPRMRSVAVRVSSEQEAAPAVRAPSGRTIEECEADAVAGRFPAPPPLVRPKAPEGTPQIRPLDLTKRPRRNRRSPALRAAFQETTISPANLVLPLFIHEGEDDAPIGAMPGCYRLGWRHGLLDEVYKSRDVGVNSFVLFPKVPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVIMNDETVYQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFHDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALLETAADEAEGADILLVKPGLPYLDVIRLLRDNSALPIAAYQVSGEYSMIKAGGALNMIDEEKVMMESLMCLRRAGADIILTYFARQAANVLCGMRSN |
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| Function | Delta-aminolevulinic acid dehydratase, chloroplastic [UniProtKB/Swiss-Prot:Q5Z8V9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0028320 | OsCMeo_06g0028320.02 | Chr06 | 29572307 | 29576422 | - | NAM | ||
| CDS seq | atggcgtccaccgtctccttctccccggccaacgtgcagatgctccagggcaggagctgccacggccacgcggcgttcgggggctgctccgccgtgccaagaaccgggccaaggatgcgttccgtggccgtgagggtcagcagcGagcaggaggcggcgccggcggtcagggcgccgtcggggaggaccatcgaggagtgcgaggccgacgccgtggccgggagattcccggctcccccgccgttggtcagacccaaggctcccgaaggaacacctcagatcaggcctcttgacttgacaaagcgccctcgtcgcaaccgcaggtcgcctgctcttagggccgcattccaggagaccaccatctcacctgccaatttggtgctcccgctgttcatccatgaaggggaagatgatgctcctattggagctatgcctgggtgctataggcttggttggaggcatgggcttcttgatgaggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcctgatgcattgaagtctcaatctggagatgaggcatacaatgataatggtttggttccacggactattcgcctgctcaaggataaattccctgacattgttgtctacacggatgttgctctggacccttattcatctgatggtcatgatggcattgtcagggaagatggagtaattatgaatgatgaaacagtttatcaactgtgcaagcaggctgtttcacaggcacgtgctggtgctgatgtagttagccctagtgacatgatggatggccgtgtTggagcaatacgtgctgctttggatgctgagggtttccatgatgtctccattatgtcctatactgcaaagtacgccagttcgttttatggccCattccgagaagctttggattcaaatccaagatttggggacaagaagacttaccaGatgaacccagctaactacagagaagcgcttctagaaactgctgcagatgaggcagaaggagctgatattcttctggtaaaacctggattgccatacttggatgtcatccgtcttcttagggacaattcagcattgccaatcgctgcatatcaggtctctggagagtactccatgatcaaagctggaggagcactgaacatgatcgacgaagagaaggtgatgatggagtcgctcatgtgcctgaggcgagccggcgctgacatcatcctgacgtatttcgcgcgtcaggccgccaacgtgctgtgcggcatgcgatccaactag
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| Protein seq | MASTVSFSPANVQMLQGRSCHGHAAFGGCSAVPRTGPRMRSVAVRVSSEQEAAPAVRAPSGRTIEECEADAVAGRFPAPPPLVRPKAPEGTPQIRPLDLTKRPRRNRRSPALRAAFQETTISPANLVLPLFIHEGEDDAPIGAMPGCYRLGWRHGLLDEVYKSRDVGVNSFVLFPKVPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVIMNDETVYQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFHDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALLETAADEAEGADILLVKPGLPYLDVIRLLRDNSALPIAAYQVSGEYSMIKAGGALNMIDEEKVMMESLMCLRRAGADIILTYFARQAANVLCGMRSN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0028320 | OsCMeo_06g0028320.01 | Chr06 | 29571812 | 29576581 | - | NAM | ||
| CDS seq | atggcgtccaccgtctccttctccccggccaacgtgcagatgctccagggcaggagctgccacggccacgcggcgttcgggggctgctccgccgtgccaagaaccgggccaaggatgcgttccgtggccgtgagggtcagcagcGagcaggaggcggcgccggcggtcagggcgccgtcggggaggaccatcgaggagtgcgaggccgacgccgtggccgggagattcccggctcccccgccgttggtcagacccaaggctcccgaaggaacacctcagatcaggcctcttgacttgacaaagcgccctcgtcgcaaccgcaggtcgcctgctcttagggccgcattccaggagaccaccatctcacctgccaatttggtgctcccgctgttcatccatgaaggggaagatgatgctcctattggagctatgcctgggtgctataggcttggttggaggcatgggcttcttgatgaggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcctgatgcattgaagtctcaatctggagatgaggcatacaatgataatggtttggttccacggactattcgcctgctcaaggataaattccctgacattgttgtctacacggatgttgctctggacccttattcatctgatggtcatgatggcattgtcagggaagatggagtaattatgaatgatgaaacagtttatcaactgtgcaagcaggctgtttcacaggcacgtgctggtgctgatgtagttagccctagtgacatgatggatggccgtgtTggagcaatacgtgctgctttggatgctgagggtttccatgatgtctccattatgtcctatactgcaaagtacgccagttcgttttatggccCattccgagaagctttggattcaaatccaagatttggggacaagaagacttaccaGatgaacccagctaactacagagaagcgcttctagaaactgctgcagatgaggcagaaggagctgatattcttctggtaaaacctggattgccatacttggatgtcatccgtcttcttagggacaattcagcattgccaatcgctgcatatcaggtctctggagagtactccatgatcaaagctggaggagcactgaacatgatcgacgaagagaaggtgatgatggagtcgctcatgtgcctgaggcgagccggcgctgacatcatcctgacgtatttcgcgcgtcaggccgccaacgtgctgtgcggcatgcgatccaactag
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| Protein seq | MASTVSFSPANVQMLQGRSCHGHAAFGGCSAVPRTGPRMRSVAVRVSSEQEAAPAVRAPSGRTIEECEADAVAGRFPAPPPLVRPKAPEGTPQIRPLDLTKRPRRNRRSPALRAAFQETTISPANLVLPLFIHEGEDDAPIGAMPGCYRLGWRHGLLDEVYKSRDVGVNSFVLFPKVPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVIMNDETVYQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFHDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALLETAADEAEGADILLVKPGLPYLDVIRLLRDNSALPIAAYQVSGEYSMIKAGGALNMIDEEKVMMESLMCLRRAGADIILTYFARQAANVLCGMRSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.133372 | 8.071936 | 22.620077 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0704600 | RBH | 8.625320 | 6.804024 | 14.824541 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49110 | RBH | 4.464391 | 3.485843 | 2.894010 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0704600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028360 | RBH | 1.614759 | 11.598203 | 22.618620 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028180 | RBH | 0.846165 | 2.690954 | 6.348953 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002980 | RBH | 0.0 | 0.0 | 0.324912 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027910 | RBH | 0.594136 | 0.323349 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028400 | RBH | 20.184587 | 15.387295 | 62.880470 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467900 | SBH | 10.033544 | 6.0683225 | 5.1975795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027770 | RBH | 1.275445 | 0.638925 | 4.883823 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0451400 | RBH | 26.860207 | 9.653508 | 8.8562985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028310 | RBH | 1.454773 | 0.262234 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028360 | RBH | 1.485416 | 8.816360 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027950 | RBH | 21.432461 | 7.217937 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028610 | RBH | 2.405726 | 1.132854 | 5.516957 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028230 | RBH | 1.755512 | 4.727648 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028110 | RBH | 1.106068 | 4.720240 | 11.638337 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028190 | RBH | 5.404356 | 13.041861 | 23.751225 |
