Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0027310 | OGI:06081350 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:28698845-28702810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaccagcaaaATaaatgatgtgatattagaaatacaaagttacaaacatgagtatccagttcaaacatccgtacatagtacgtttgtgccgtttgttacacatgaaagttgcacAaatatgtagcaattagcaaatgtacccaattattACacacaaagtatgcatgcatggaacgaacatgtatgcgtacacaatagggtgcagcacaaatgacacagacatgatgcgcttcaagccttcaatacacgaggagtatcagagtatggacgcccagcctggaaggccactccaaccaaatattcgaatgcaattttctttgagcggaaagtcttgaaaccagccggttctctacaggcctggcgtcaggggggcatcacgtacgattctagtgcaagaaaatgagacggataaagaggtaagctcatgttcaggagataatcacatatcaatgcacaaaagtgcagacaaacaaaaactaactccctttcatacagtagtaaaatcctgagtagatcaacacgcaataagcgttttggagctggcggacttaccttttcccagattttattgtcgatgtaaatccgcagaacgtggtggatgagatgaaaatcctcgccggattcagccgtgcatctcctGctcaactcggggcagtcacgaatcccaattatcttaagacaagtgaaactttggatgaaatctggcagcttctccagcccttggcaatcgccgatacaaaaatattgaagagaggacgcagcagattggaagctcgctgagaaacccaccagcttcggaagccccacaaggttgagcgcacgaagactgcccaggccgctcaaggcttcccctggttccatcaaatccaactcattgcagttattaagcaccaatttctcaagtgaggagagctgcttcattgcagaggggagagaagccaacttcggacagttgaagatgcgcagctcccgcagggcagcgaggctgccgaatccctctgtcagtgatgttaactcaacgcagtgatgcaaatatagaaacgtcaggctaggccaaccacaaaatccacTttttagtagatacttctgctttgacgtgaggctcaaatatgtaaggctgacaagttgatgcacgtctcttggtaggccctctagttggtcgcactgagcaagatgaaccgtttgcagattcaccaacctacataaagaatttggtaggcgtttgatttttcggttccattgtagatctaagtaccgtaggtgcttcaaatttctgatggaacttggcagctcttcaaagtgagtttcggaaaaaatcaatacacgcagaagcgtgaacgttgagaagaggacctcaagaaaaggtttgctcacggtaccataattgtatatgcttgaaaatgttctcaccttacatgcccttttcaactgcttaggaaattcgtgctctcctgagaagtccttgcaatctcacactagatgcttaacccttttagagaaagcagtcTtttcacaactgataacagcatgctcattttctgaaacgaattgtgctagatcatgaataagatcatgcaTtttacagctttgaatggtttcatcataaacaataatttggtcttggaacaacgatcttcctaggagatcatgaaagcacttacttccagcagatatcatttgtttgctttccttgcctgtattcaacatccccaatgccatccataacatgactgtagtagaataaaacaactgatggtcttttgggaaaatggataaacaagaaaagcatgctcgcagatggggaggaagtgcatcataactcagttttaatgcagggattagaccatatacttttgcctcagtattccaaattttatcctccatgacgcgccgccattctccaacatcatgactagtgcacaatagggaacccaatgtctttgctgccaagggaataccacaacatttctcaacaatggattttccaatttccaataacttagggtcatgtggcccgccacctctaaatgcataatgcatgaatacttgcatgcacttatcatcagttagttttgccacatcatattgcgtgtggtgactataatcacacttccacttcctccactggatagtaggcattttagctcgtcccattcattaactttgtcattccacatgtcatccaatactagcagatatctcttttcacataaaaacccacgcaccttactctgtagcatctctaggtttaaatgtttgttgcttttacctgtgcctgactgcattatgtcatccaggatcttcttaagatcaaatacattagagacacatacccataacttcttctgaaatgtctcggtaatttgtacatcgttgtaaatcagctgtgccagtgcagtttttcctatgcctcctaaaccaacaataggaagcacagacaaaggatttgattctgtagctgtacaaatcgtctcaacaatcttacgtttagcttcatctcttccaataatttctggttcagttatgaaagaatgtgtttccctgttgctgctcccagatgtatggacatcaattacatgctcagttagtccaaactgtgctctattggctgctatctcatcaagttttttgcgaacttcttttattttttgactcaatttgaatggataagtaagcatgttccttgttctatggatgaaactattccgaacttcttgctctagggcttcggtagaaacatcgtccagaacatcgtctatgtcatagactgcatccttcaaattgtccaaccactcttgaagggagtgggaagtagactgcttgcattcggcatctctaagaacagcacatatggatctcagtgatgtttccaacttctctagttctttcttgacgttccaagctgactttatctcactaacagcccagtcagtgccaaaagacgcagctttttcaagaacggtgattgcaaagctcgatatactcacctctgccatagtgtacctgtgggcagggttttcaatttcaaaattagtatttttgcgttggggggtgcgaaattttgaaaatttcgaattcttttgccgaaattatttgaaattttgattgattttgaataaaattttgaccaaattcacaaaaaaaATGaaaaaaaacgaaaatttcgggcgagatgtgagcttgccggtgggggacgaaattaccAaaatttcaaaccctgcttgtgggtactacaaaaatactccgtaaccaacagattcaaggcaatgtacaacagtagatacgtttctttgatgccatgcttggcatgcccatttcatattgacagtggaagaACatttttatgacgtggaattttttttcttaacaattttagaaatatattctccacgtccaggagtgtgaaagagcAaagtcgtttggaacgtaaagaaactaaaaccaatatctttgtctaccacagttggacaaatataagagagcagagataatagcttgtagaggccGggtttaatctaatccattatctaaaatagctagcagctgatcactgcaaggaccacgaaaaatagctataggaacggtagatgtaaaactctactggttacatgcgtaatagcaagaaatttagtcaatgaactatcaagtgaattctggatccgattcatccaactagaacaattgtacgcaagtagacagacataatcttacagatatgcaacagtataaaagtaaaggacttcAaaaacaaggtagtgatctcaccttcacagccgaggggctcaacattcgcttcagagctcacatatcagctttttttggtcccataatacataaggttaaggataagaacatggttggcagcATatatatagacctttcgccggcgcgtgaacaaaatatcttctccaaattcctctggcaagcgggctcctctatactgtaccaggacgcagcgactccat
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| CDS seq | atggagtcgctgcgtcctgctgcgtcttttggcactgactgggctgttagtgagataaagtcagcttggaacgtcaagaaagaactagagaagttggaaacatcactgagatccatatgtgctgttcttagagatgccgaatgcaagcagtctacttcccactcccttcaagagtggttggacaatttgaaggatgcagtctatgacatagacgatgttctggacgatgtttctaccgaagccctagagcaagaagttcggaatagtttcatccatagaacaaggaacatgcttacttatccattcaaattgagtcaaaaaataaaagaagttcgcaaaaaacttgatgagatagcagccaatagagcacagtttggactaactgagcatgtaattgatgtccatacatctgggagcagcaacagggaaacacattctttcataactgaaccagaaattattggaagagatgaagctaaacgtaagattgttgagacgatttgtacagctacagaatcaaatcctttgtctgtgcttcctattgttggtttaggaggcataggaaaaactgcactggcacagctgatttacaacgatgtacaaattaccgagacatttcagaagaagttatgggtatgtgtctctaatgtatttgatcttaagaagatcctggatgacataatgcagtcaggcacagagggattcggcagcctcgctgccctgcgggagctgcgcatcttcaactgtccgaagttggcttctctcccctctgcaatgaagcagctctcctcacttgagaaattggtgcttaataactgcaatgagttggatttgatggaaccaggggaagccttgagcggcctgggcagtcttcgtgcgctcaaccttgtggggcttccgaagctggtgggtttctcagcgagcttccaatctgctgcgtcctctcttcaatatttttgtatcggcgattgccaagggctggagaagctgccagatttcatccaaagtttcacttgtcttaagataattgggattcgtgactgccccgagttgagCaggagatgcacggctgaatccggcgaggattttcatctcatccaccacgttctgcggatttacatcgacaataaaatctgggaaaagaatcgtacgtga
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| Protein seq | MESLRPAASFGTDWAVSEIKSAWNVKKELEKLETSLRSICAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLTYPFKLSQKIKEVRKKLDEIAANRAQFGLTEHVIDVHTSGSSNRETHSFITEPEIIGRDEAKRKIVETICTATESNPLSVLPIVGLGGIGKTALAQLIYNDVQITETFQKKLWVCVSNVFDLKKILDDIMQSGTEGFGSLAALRELRIFNCPKLASLPSAMKQLSSLEKLVLNNCNELDLMEPGEALSGLGSLRALNLVGLPKLVGFSASFQSAASSLQYFCIGDCQGLEKLPDFIQSFTCLKIIGIRDCPELSRRCTAESGEDFHLIHHVLRIYIDNKIWEKNRT |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0027310 | OsCMeo_06g0027310.01 | Chr06 | 28698845 | 28702810 | - | NAM | ||
| CDS seq | atggagtcgctgcgtcctgctgcgtcttttggcactgactgggctgttagtgagataaagtcagcttggaacgtcaagaaagaactagagaagttggaaacatcactgagatccatatgtgctgttcttagagatgccgaatgcaagcagtctacttcccactcccttcaagagtggttggacaatttgaaggatgcagtctatgacatagacgatgttctggacgatgtttctaccgaagccctagagcaagaagttcggaatagtttcatccatagaacaaggaacatgcttacttatccattcaaattgagtcaaaaaataaaagaagttcgcaaaaaacttgatgagatagcagccaatagagcacagtttggactaactgagcatgtaattgatgtccatacatctgggagcagcaacagggaaacacattctttcataactgaaccagaaattattggaagagatgaagctaaacgtaagattgttgagacgatttgtacagctacagaatcaaatcctttgtctgtgcttcctattgttggtttaggaggcataggaaaaactgcactggcacagctgatttacaacgatgtacaaattaccgagacatttcagaagaagttatgggtatgtgtctctaatgtatttgatcttaagaagatcctggatgacataatgcagtcaggcacagagggattcggcagcctcgctgccctgcgggagctgcgcatcttcaactgtccgaagttggcttctctcccctctgcaatgaagcagctctcctcacttgagaaattggtgcttaataactgcaatgagttggatttgatggaaccaggggaagccttgagcggcctgggcagtcttcgtgcgctcaaccttgtggggcttccgaagctggtgggtttctcagcgagcttccaatctgctgcgtcctctcttcaatatttttgtatcggcgattgccaagggctggagaagctgccagatttcatccaaagtttcacttgtcttaagataattgggattcgtgactgccccgagttgagCaggagatgcacggctgaatccggcgaggattttcatctcatccaccacgttctgcggatttacatcgacaataaaatctgggaaaagaatcgtacgtga
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| Protein seq | MESLRPAASFGTDWAVSEIKSAWNVKKELEKLETSLRSICAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLTYPFKLSQKIKEVRKKLDEIAANRAQFGLTEHVIDVHTSGSSNRETHSFITEPEIIGRDEAKRKIVETICTATESNPLSVLPIVGLGGIGKTALAQLIYNDVQITETFQKKLWVCVSNVFDLKKILDDIMQSGTEGFGSLAALRELRIFNCPKLASLPSAMKQLSSLEKLVLNNCNELDLMEPGEALSGLGSLRALNLVGLPKLVGFSASFQSAASSLQYFCIGDCQGLEKLPDFIQSFTCLKIIGIRDCPELSRRCTAESGEDFHLIHHVLRIYIDNKIWEKNRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.275259 | 2.851659 | 0.707664 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0693100 | RBH | 0.165972 | 0.255312 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47800 | RBH | 0.111744 | 0.170963 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0693100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027370 | RBH | 0.064421 | 0.889842 | 2.277884 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027160 | RBH | 0.000000 | 0.980735 | 0.285582 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003940 | SBH | 0.432937 | 1.216031 | 2.076012 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026880 | RBH | 0.134639 | 0.040393 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027380 | RBH | 4.364605 | 1.163510 | 17.748362 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0455600 | RBH | 1.6721205 | 4.166123 | 0.0140195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026780 | RBH | 0.280936 | 0.125460 | 0.396739 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0437900 | RBH | 0.9519945 | 0 | 0.013716 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027270 | RBH | 0.034728 | 0.033227 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027350 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026940 | RBH | 5.603379 | 10.171374 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027560 | RBH | 2.348562 | 0.273934 | 0.099573 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027180 | RBH | 0.210826 | 5.438113 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027110 | RBH | 0.0 | 0.0 | 0.250596 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027190 | RBH | 3.303790 | 18.802345 | 7.480608 |
