Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0020230 | OGI:06061910 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:22127980-22132346 | ||||||||
| Gene Symbol | RLCK207, OsPUB47, OsRLCK207 | ||||||||||
| DNA seq | cttttgctgtgctatttccagcgaaacagcgacccatggacttcttcatttttgccactgttgattgtgttcctgaggaacaaagatactgaacaattattttttagaccagagctgaacaattaattaacagcatacaaagaactaaaagaaaaggaattttggttgccaccaaaccacactagcattaggggggggggggggattgaattcagcagctgttttaagtctttgaatagcaagaagccatgttaggctttaggcttctctgaacgtgaccaacccttaagctaacaaaaccatgtccctgtgctaccatgatgtacagctatctcagtggaacataaaaattctaactaacccaaactgcataagccacaaagaaagtagtaaatcccataactacatcaagatgactgcgatttccattgttgtatcgccacacgcaaggaatggttgggaattatggataaatattggagcctttgttttgtgacaggggatgtcttgtgtttcttgagccaagcttttattgccctgtgctcgtaggtgtgcccatcagcagcaacataagggtcatccattacctcctgcaccaaaattgtcattgtttctatttagtctagggagataatcagaactggcgcactcaactagttagcaaattttacctgcaatattgggcagatgaagtggctcggcacagctgcgtttggacttcttaatgtgggagaagcagtaattctgctcagaatgctctcgatctctggcagcacctccgattcaaggctaggcctgtctctacattttaaagctgtacaccgcaccgccaattttgccaagatctctgcctcagcgattggccaatcaatctgagaactgtcaagaacatcggaaattgagtctttttttatcgcttcttctgcactaagtatcagcccgtgtgggcgcttgccagtcagtagttgaagaatgatgatccccagagcataaacatcagatttcggacgaattgtcccagttaactggtattccggatccatgtaatacagtgtgccggcaactgcagtatctctgtactctgtgagcccttccggcacaatatctgatatgagcttggcaagacctacatcaccaattttgctgacgtagttcttgtcgagcaatatgtttccaggcttcaggtcacgatggacaatgggctctggtttcgttgcatgcaagaaagcaagcccacaagccacctcaaagatgatttggatgcgcaggaaccaatgtagtgattgctgacctttgttgttaataagttgatcttctagacttccattctccatgtattcatacacgaggcatccaatttcagggcagaaaccaagcagaagaactaagttgggatggtgaagttggctgaggatctcgacctacataatatcagataaccaaataagtaattctaagcgccagtaacaactttattgcctagccaagaaagtcatccatcagttatgatgaagattagaaaaagataggttaggatacctctctcaagaactcatcaatcttgtcactggaatcttgctgaataaccttgacagctacttcagtatgatcaagggtacacctgtacacattcccatagcccccctcaccaatcttctttgcatcggagaagttatcggtggcaagctgtatttcacgttttgagtaccgcctgcaacttttgccagttgacagaagagcatccataacctttgtcttctcagcaatcaccatatcagctactatttcagccttatgcttggaaaaagcctcctgagcgaacaaagtttttgccatctcaacttctgtaacagcttctagatgtctggtcttctcatctgcaaccttctgcttcaacaattcctccctatgtagtgcatcttgcaccttcttcgcttcctcagtacactcactagaaagaaccttaatctgaaacatcagagtaacatggaaaaaaactaattaaaacattcacttttaatatatgaatatagatatcttcatgtacctagtaatgtaaaaaactggtcacagtaactcaagccaaacagcagccaaaagaacttaaccttatcttggttagatcatcacaagctttatcacacatcactaacctttttcttggcatggacgagatcttcacaagctttatcatacatcactaacgtatcctgcaattcctttctcagttttgctacttcatctactggttgagactgcagatcctgctaagaattgaatcacaattaatacaacttatggaaagcttatgaaagccaacactagtcagaatattttcaaggctggaaacaggtctgacctcatcaattgagctcaaggcaacataagggatttccttcaatcggccaatagcatcgggatccgtgttcacatctctgcccggtgtttttcgccctaagcttccaaaaaggcttcttccatgacttcctgaacttttaccagcattagtagaagtgctacgagagctgcaggtatgagagcctgcataactcgtatctccagaagattttggtgttccatcctcagggtggtcatgcaaagattgtttgtctagcagccagttcttctgtattcgggaaaatgatttatgactgattgactgagtccttacacaagcgcttgactctgcaaaaaatagaaaggtttaaggcaaaatgagtgcctcaccattgcatttcccaaaagaaatagtagagaatatgggcaaaacatactgcttgttcgagcctgatttgcaaacttaatagtcaatctgtgcctggacacaacaaatacattgcacgaacatggcatagctttcaggacagtagagggcacatctcggagccgtaatatcctgaaaaaggtaacagcaataccatttaacaacaacagtggatttggcaaaagtggccagaaatcgatttacatttacagagatgctcattaattttgcttatgagtttaaagttgacaaataatgaagataaaaatcccccgcattaaccagctaaagtgactaatctatttatcagcatcatgaagacaaactgatgttagttgcgctggctcttaccaatatctgtggcttcctgggtcctaattactcaaaaggcataaatgcgagaaaaaaagaaacgaatgtcaacagaaaaaggaaagtttaatcaagatatatgtacgtgcacacacctatcacctttactcagaacaagtgacaccatcccaaaaaggggctcaatcttcccttttttttttctgaaaaactttttgtcccatatacacagcatatctagtatgcactttccagttatttttatactttggggggaataaagctatacaggtaagaacaaaaatcccccttatccctatcaatctatcattggtagttgaattctcaaaagcgaaattctaacctttactagtagttgggaaaggagatttgtcacccaaaataaagtgaagaggattatatttttcaaaaaaaaaacaattaatctagtataccttttgaaccagttgagggaggtggatccaaccacgaggttgcggacgccggagtccgccgcgtacctgaccagcgccgccgtgacgctcggctcctccagaatcaccgtctccacctgcaggggaggaggaggaggagggggagctcgaattttgaggcgcggatcgagcaaaatcggcggagattttcgaggaggaggaggaggagacttacggttgtgcgggcgaagaggcggcgcagggggaggaagacctcctcctgcgcacgcgcgcggcggtcctccgcgtacatctccaccgtctccgcgtccatcttctccaccggcaccctctcccccgctgcgcgcgccacgcagagaaaaacccatcagctcgaaccgaatcgacgacggcgacgacgaggaggaggaggaaggaggaggagagggcttacagggggaggggacgaaggagacgggggggatgacgtggacgagcgcgacgcgcccggccccggcgccgtgggcggcgaggttggcggccgcccacctcgccgcgcggcggctggcgcgcccgtccccgcgcaccgccaccgccacgacgatcgcgcccgccgccgcagcagcagaggcagaagcagaagcagaagcagcgtcgcctccacccgaggaggaggcgagcgacgacgaggaggaggaggaagacgaggccatatgctcttcgtcggcggcgccaaccactcgacggcggcggaggcggaggtgggtggcgaggggggagggggggaaggggagcgagtcaaccgcgacgaaataaataaaccgcgggggaagggaagc
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| CDS seq | atggcctcgtcttcctcctcctcctcgtcgtcgctcgcctcctcctcgggtggaggcgacgctgcttctgcttctgcttctgcctctgctgctgcggcggcgggcgcgatcgtcgtggcggtggcggtgcgcggggacgggcgcgccagccgccgcgcggcgaggtgggcggccgccaacctcgccgcccacggcgccggggccgggcgcgtcgcgctcgtccacgtcatcccccccgtctccttcgtcccctccccctcgggggagagggtgccggtggagaagatggacgcggagacggtggagatgtacgcggaggaccgccgcgcgcgtgcgcaggaggaggtcttcctccccctgcgccgcctcttcgcccgcacaaccgtggagacggtgattctggaggagccgagcgtcacggcggcgctggtcaggtacgcggcggactccggcgtccgcaacctcgtggttggatccacctccctcaactggttcaaaaggatattacggctccgagatgtgccctctactgtcctgaaagctatgccatgttcgtgcaatgtatttgttgtgtccaggcacagattgactattaagtttgcaaatcaggctcgaacaagcaagtcaagcgcttgtgtaaggactcagtcaatcagtcataaatcattttcccgaatacagaagaactggctgctagacaaacaatctttgcatgaccaccctgaggatggaacaccaaaatcttctggagatacgagttatgcaggctctcatacctgcagctctcgtagcacttctactaatgctggtaaaagttcaggaagtcatggaagaagcctttttggaagcttagggcgaaaaacaccgggcagagatgtgaacacggatcccgatgctattggccgattgaaggaaatcccttatgttgccttgagctcaattgatgaggatctgcagtctcaaccagtagatgaagtagcaaaactgagaaaggaattgcaggatacgttagtgatgtatgataaagcttgtgaagatctcgtccatgccaagaaaaagattaaggttctttctagtgagtgtactgaggaagcgaagaaggtgcaagatgcactacatagggaggaattgttgaagcagaaggttgcagatgagaagaccagacatctagaagctgttacagaagttgagatggcaaaaactttgttcgctcaggaggctttttccaagcataaggctgaaatagtagctgatatggtgattgctgagaagacaaaggttatggatgctcttctgtcaactggcaaaagttgcaggcggtactcaaaacgtgaaatacagcttgccaccgataacttctccgatgcaaagaagattggtgaggggggctatgggaatgtgtacaggtgtacccttgatcatactgaagtagctgtcaaggttattcagcaagattccagtgacaagattgatgagttcttgagagaggtcgagatcctcagccaacttcaccatcccaacttagttcttctgcttggtttctgccctgaaattggatgcctcgtgtatgaatacatggagaatggaagtctagaagatcaacttattaacaacaaaggtcagcaatcactacattggttcctgcgcatccaaatcatctttgaggtggcttgtgggcttgctttcttgcatgcaacgaaaccagagcccattgtccatcgtgacctgaagcctggaaacatattgctcgacaagaactacgtcagcaaaattggtgatgtaggtcttgccaagctcatatcagatattgtgccggaagggctcacagagtacagagatactgcagttgccggcacactgtattacatggatccggaataccagttaactgggacaattcgtccgaaatctgatgtttatgctctggggatcatcattcttcaactactgactggcaagcgcccacacgggctgatacttagtgcagaagaagcgataaaaaaagactcaatttccgatgttcttgacagttctcagattgattggccaatcgctgaggcagagatcttggcaaaattggcggtgcggtgtacagctttaaaatgtagagacaggcctagccttgaatcggaggtgctgccagagatcgagagcattctgagcagaattactgcttctcccacattaagaagtccaaacgcagctgtgccgagccacttcatctgcccaatattgcaggaggtaatggatgacccttatgttgctgctgatgggcacacctacgagcacagggcaataaaagcttggctcaagaaacacaagacatcccctgtcacaaaacaaaggctccaatatttatccataattcccaaccattccttgcgtgtggcgatacaacaatggaaatcgcagtcatcttga
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| Protein seq | MASSSSSSSSSLASSSGGGDAASASASASAAAAAGAIVVAVAVRGDGRASRRAARWAAANLAAHGAGAGRVALVHVIPPVSFVPSPSGERVPVEKMDAETVEMYAEDRRARAQEEVFLPLRRLFARTTVETVILEEPSVTAALVRYAADSGVRNLVVGSTSLNWFKRILRLRDVPSTVLKAMPCSCNVFVVSRHRLTIKFANQARTSKSSACVRTQSISHKSFSRIQKNWLLDKQSLHDHPEDGTPKSSGDTSYAGSHTCSSRSTSTNAGKSSGSHGRSLFGSLGRKTPGRDVNTDPDAIGRLKEIPYVALSSIDEDLQSQPVDEVAKLRKELQDTLVMYDKACEDLVHAKKKIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHKAEIVADMVIAEKTKVMDALLSTGKSCRRYSKREIQLATDNFSDAKKIGEGGYGNVYRCTLDHTEVAVKVIQQDSSDKIDEFLREVEILSQLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQQSLHWFLRIQIIFEVACGLAFLHATKPEPIVHRDLKPGNILLDKNYVSKIGDVGLAKLISDIVPEGLTEYRDTAVAGTLYYMDPEYQLTGTIRPKSDVYALGIIILQLLTGKRPHGLILSAEEAIKKDSISDVLDSSQIDWPIAEAEILAKLAVRCTALKCRDRPSLESEVLPEIESILSRITASPTLRSPNAAVPSHFICPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLQYLSIIPNHSLRVAIQQWKSQSS |
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| Function | U-box domain-containing protein 34 [UniProtKB/Swiss-Prot:Q8S8S7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0020230 | OsCMeo_06g0020230.01 | Chr06 | 22127980 | 22132346 | - | NAM | ||
| CDS seq | atggcctcgtcttcctcctcctcctcgtcgtcgctcgcctcctcctcgggtggaggcgacgctgcttctgcttctgcttctgcctctgctgctgcggcggcgggcgcgatcgtcgtggcggtggcggtgcgcggggacgggcgcgccagccgccgcgcggcgaggtgggcggccgccaacctcgccgcccacggcgccggggccgggcgcgtcgcgctcgtccacgtcatcccccccgtctccttcgtcccctccccctcgggggagagggtgccggtggagaagatggacgcggagacggtggagatgtacgcggaggaccgccgcgcgcgtgcgcaggaggaggtcttcctccccctgcgccgcctcttcgcccgcacaaccgtggagacggtgattctggaggagccgagcgtcacggcggcgctggtcaggtacgcggcggactccggcgtccgcaacctcgtggttggatccacctccctcaactggttcaaaaggatattacggctccgagatgtgccctctactgtcctgaaagctatgccatgttcgtgcaatgtatttgttgtgtccaggcacagattgactattaagtttgcaaatcaggctcgaacaagcaagtcaagcgcttgtgtaaggactcagtcaatcagtcataaatcattttcccgaatacagaagaactggctgctagacaaacaatctttgcatgaccaccctgaggatggaacaccaaaatcttctggagatacgagttatgcaggctctcatacctgcagctctcgtagcacttctactaatgctggtaaaagttcaggaagtcatggaagaagcctttttggaagcttagggcgaaaaacaccgggcagagatgtgaacacggatcccgatgctattggccgattgaaggaaatcccttatgttgccttgagctcaattgatgaggatctgcagtctcaaccagtagatgaagtagcaaaactgagaaaggaattgcaggatacgttagtgatgtatgataaagcttgtgaagatctcgtccatgccaagaaaaagattaaggttctttctagtgagtgtactgaggaagcgaagaaggtgcaagatgcactacatagggaggaattgttgaagcagaaggttgcagatgagaagaccagacatctagaagctgttacagaagttgagatggcaaaaactttgttcgctcaggaggctttttccaagcataaggctgaaatagtagctgatatggtgattgctgagaagacaaaggttatggatgctcttctgtcaactggcaaaagttgcaggcggtactcaaaacgtgaaatacagcttgccaccgataacttctccgatgcaaagaagattggtgaggggggctatgggaatgtgtacaggtgtacccttgatcatactgaagtagctgtcaaggttattcagcaagattccagtgacaagattgatgagttcttgagagaggtcgagatcctcagccaacttcaccatcccaacttagttcttctgcttggtttctgccctgaaattggatgcctcgtgtatgaatacatggagaatggaagtctagaagatcaacttattaacaacaaaggtcagcaatcactacattggttcctgcgcatccaaatcatctttgaggtggcttgtgggcttgctttcttgcatgcaacgaaaccagagcccattgtccatcgtgacctgaagcctggaaacatattgctcgacaagaactacgtcagcaaaattggtgatgtaggtcttgccaagctcatatcagatattgtgccggaagggctcacagagtacagagatactgcagttgccggcacactgtattacatggatccggaataccagttaactgggacaattcgtccgaaatctgatgtttatgctctggggatcatcattcttcaactactgactggcaagcgcccacacgggctgatacttagtgcagaagaagcgataaaaaaagactcaatttccgatgttcttgacagttctcagattgattggccaatcgctgaggcagagatcttggcaaaattggcggtgcggtgtacagctttaaaatgtagagacaggcctagccttgaatcggaggtgctgccagagatcgagagcattctgagcagaattactgcttctcccacattaagaagtccaaacgcagctgtgccgagccacttcatctgcccaatattgcaggaggtaatggatgacccttatgttgctgctgatgggcacacctacgagcacagggcaataaaagcttggctcaagaaacacaagacatcccctgtcacaaaacaaaggctccaatatttatccataattcccaaccattccttgcgtgtggcgatacaacaatggaaatcgcagtcatcttga
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| Protein seq | MASSSSSSSSSLASSSGGGDAASASASASAAAAAGAIVVAVAVRGDGRASRRAARWAAANLAAHGAGAGRVALVHVIPPVSFVPSPSGERVPVEKMDAETVEMYAEDRRARAQEEVFLPLRRLFARTTVETVILEEPSVTAALVRYAADSGVRNLVVGSTSLNWFKRILRLRDVPSTVLKAMPCSCNVFVVSRHRLTIKFANQARTSKSSACVRTQSISHKSFSRIQKNWLLDKQSLHDHPEDGTPKSSGDTSYAGSHTCSSRSTSTNAGKSSGSHGRSLFGSLGRKTPGRDVNTDPDAIGRLKEIPYVALSSIDEDLQSQPVDEVAKLRKELQDTLVMYDKACEDLVHAKKKIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHKAEIVADMVIAEKTKVMDALLSTGKSCRRYSKREIQLATDNFSDAKKIGEGGYGNVYRCTLDHTEVAVKVIQQDSSDKIDEFLREVEILSQLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQQSLHWFLRIQIIFEVACGLAFLHATKPEPIVHRDLKPGNILLDKNYVSKIGDVGLAKLISDIVPEGLTEYRDTAVAGTLYYMDPEYQLTGTIRPKSDVYALGIIILQLLTGKRPHGLILSAEEAIKKDSISDVLDSSQIDWPIAEAEILAKLAVRCTALKCRDRPSLESEVLPEIESILSRITASPTLRSPNAAVPSHFICPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLQYLSIIPNHSLRVAIQQWKSQSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.872403 | 3.013907 | 1.341105 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0574200 | RBH | 1.088410 | 0.907139 | 1.006503 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37620 | RBH | 0.953170 | 0.655140 | 0.260623 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0574200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020280 | RBH | 0.291060 | 1.788165 | 2.376254 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020120 | RBH | 0.044060 | 2.576986 | 0.605421 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020620 | SBH | 0.108950 | 0.0 | 0.430098 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019940 | RBH | 0.148841 | 0.159631 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020410 | RBH | 2.468085 | 7.587904 | 6.294978 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0350200 | RBH | 4.384346 | 27.453333 | 10.7842875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019800 | RBH | 0.080990 | 0.751113 | 0.302257 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0324400 | RBH | 5.3804665 | 37.432251 | 9.469112 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020300 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020320 | RBH | 0.183465 | 2.144097 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019940 | RBH | 1.659316 | 10.852999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020620 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020080 | RBH | 0.291707 | 3.833623 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020000 | RBH | 0.334704 | 1.295537 | 0.854674 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020180 | RBH | 0.839040 | 6.624410 | 1.374315 |
