Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0013410 | OGI:06034990 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:12178925-12179815 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaacatgactgcatctctacacgccagcatctccactgtgctcggatcactgatatggtatatcttcgacactcagcagtgacaaagtttcctgtattatcccgtgcaacaattcctgcacccgcaactccatccttcaagttcagtgctccattagtgttcagtttcatccatcccaaagcaggtggagcccacttctgaaccacagccgatgggtcctcctgagatggaatctccagagatttaatgagctcatcaaccaattcaacagaccttaacgactggtacttgacatcgccatggttgtagctgtttcggctcccccagatggtccacattacagagactgcaattgccgcctcccgtttgctcatgatatctgcatccaacacgtcccacgaccatgtagctgggtttaaccgtggcatcttgagatcaaaaagatcctgagccgcactccaaaacaattttacatgctcacattcgactaatgcatgaaactttgtttcattgtcattgccacagagaggacaattacttatttctttcatatggcttctgcggagttcagcagcacagggtagcaaatttttcaccacccgccaccagaacactcttatcttaggcattatccggagtctccacagtgctttctaggtagcctcgttacccgtggacgatcccgtagcaggttcagacaggccacaacgctgaatgagttccctgtacgcagatctcaccgtaaatatgctcgttttgtcccatgcccaagcccaaaattcatcttgctctgttctcggccttggcatgttcagaatagcagccgcatccaatggaaggaaaatccgctgcaccttctccacatcccattggtttgtattatgcaacat
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| CDS seq | atgttgcataatacaaaccaatgggatgtggagaaggtgcagcggattttccttccattggatgcggctgctattctgaacatgccaaggccgagaacagagcaagatgaattttgggcttgggcatgggacaaaacgagcatatttacggatctttttgatctcaagatgccacggttaaacccagctacatggtcgtgggacgtgttggatgcagatatcatgagcaaacgggaggcggcaattgcagtctctgtaatgtggaccatctgggggagccgaaacagctacaaccatggcgatgtcaagtaccagtcgttaaggtctgttgaattggttgatgagctcattaaatctctggagattccatctcaggaggacccatcggctgtggttcagaagtgggctccacctgctttgggatggatgaaactgaacactaatggagcactgaacttgaaggatggagttgcgggtgcaggaattgttgcacgggataatacaggaaactttgtcactgctgagtgtcgaagatataccatatcagtgatccgagcacagtggagatgctggcgtgtagagatgcagtcatgttag
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| Protein seq | MLHNTNQWDVEKVQRIFLPLDAAAILNMPRPRTEQDEFWAWAWDKTSIFTDLFDLKMPRLNPATWSWDVLDADIMSKREAAIAVSVMWTIWGSRNSYNHGDVKYQSLRSVELVDELIKSLEIPSQEDPSAVVQKWAPPALGWMKLNTNGALNLKDGVAGAGIVARDNTGNFVTAECRRYTISVIRAQWRCWRVEMQSC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0013410 | OsCMeo_06g0013410.01 | Chr06 | 12178925 | 12179815 | - | NAM | ||
| CDS seq | atgttgcataatacaaaccaatgggatgtggagaaggtgcagcggattttccttccattggatgcggctgctattctgaacatgccaaggccgagaacagagcaagatgaattttgggcttgggcatgggacaaaacgagcatatttacggatctttttgatctcaagatgccacggttaaacccagctacatggtcgtgggacgtgttggatgcagatatcatgagcaaacgggaggcggcaattgcagtctctgtaatgtggaccatctgggggagccgaaacagctacaaccatggcgatgtcaagtaccagtcgttaaggtctgttgaattggttgatgagctcattaaatctctggagattccatctcaggaggacccatcggctgtggttcagaagtgggctccacctgctttgggatggatgaaactgaacactaatggagcactgaacttgaaggatggagttgcgggtgcaggaattgttgcacgggataatacaggaaactttgtcactgctgagtgtcgaagatataccatatcagtgatccgagcacagtggagatgctggcgtgtagagatgcagtcatgttag
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| Protein seq | MLHNTNQWDVEKVQRIFLPLDAAAILNMPRPRTEQDEFWAWAWDKTSIFTDLFDLKMPRLNPATWSWDVLDADIMSKREAAIAVSVMWTIWGSRNSYNHGDVKYQSLRSVELVDELIKSLEIPSQEDPSAVVQKWAPPALGWMKLNTNGALNLKDGVAGAGIVARDNTGNFVTAECRRYTISVIRAQWRCWRVEMQSC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g21680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013470 | RBH | 0.000000 | 0.0 | 4.600324 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013320 | RBH | 0.0 | 0.614242 | 0.817562 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015570 | SBH | 0.000000 | 2.036037 | 1.130894 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013430 | RBH | 0.000000 | 0.236896 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013550 | RBH | 2.146592 | 18.596924 | 8.685095 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0202200 | RBH | 2.42184 | 12.040397 | 3.897815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013040 | RBH | 0.146657 | 0.185407 | 0.758197 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0198100 | RBH | 2.988686 | 15.503323 | 19.4578315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013570 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013820 | RBH | 0.000000 | 1.045157 | 1.004393 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013350 | RBH | 0.0 | 3.392695 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013220 | RBH | 0.000000 | 0.000000 | 2.008300 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013520 | RBH | 0.0 | 0.0 | 0.0 |
