Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0006180 | OGI:06013130 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:4603876-4605559 | ||||||||
| Gene Symbol | MKK5, OsMKK5, BUD1, OsBUD1 | ||||||||||
| DNA seq | atcgatcgaactcgatccatttccgtttgcttctttctcctctcctctccaagaagaggcgagctcgcctcctcctcctcctcctcctctcgacgcgagcggcgatgcgtgcgggcgacatgccggggcggggggctcgccgtcgcccggatctcaccctcccgatgccgcagcgcgacgcgccgacgtcgctcgccgtgccgctcccgctcccgccgccggcgacgacgacgacgtccgcgcctcccgcgggaggggcgatgcacccaccggcgtcggcgggggccgcgccgccgccgccgctggaggagctggaacgggtgaggcgggtggggagcggggcaggggggacggtgtggatggtgcgccaccgcggcacgggcaaggagtacgcgctcaaggtgctctacggcaaccacgacgacgcggtgcggcgccagatcgcgcgcgagatcgccatcctccgcaccgccgagcacccggcggtggtgcggtgccacggcatgtacgagcgcggaggcgagctgcagatcctgctcgagtacatggacggcgggtccctcgacggccgccgcatcgccgacgagcggttcctcgccgatgtcgcgcgccaggtgctctccgggatcgcctacctccaccgccgccacatcgtccaccgcgacatcaagccgtccaacctcctcatcgactccgcgcgccgcgtcaagatcgccgacttcggcgtcggccgcatcctcaaccagaccatggatccctgcaactcctccgtcggcaccatcgcctacatgagccccgagcgcatcaacaccgacctcaacgacggcgcctacgatggctacgccggcgacatctggagcttcggcctcagcatcctagagttttacatgggaaaattccccttcggtgagaatcttggcaagcagggtgactgggccgcgctcatgtgcgccatctgctactccgaccctcccgagccgcccgccgccgtctcgccggagttcagaagcttcgtcggctactgccttcagaagaatccggcgaagcggccgtccgccgcgcagctgatgcagcacccgttcgtcgccggaccgcagccacagccactcgccgccccgccgccatcgtcgtgactgccaattccatccggtcatcgtgtcaaactccatttccatctcatcaagttcttcatagccaatccattttcgagtgttcttcaaacaccatgatcgttttcatccattgctgctgccccaactcaaggttcttcctctctactgttctttgatgttgttttattcacaatgatgatcaaatattgagtaaatctggtttgtacaaaggatttttttttctacgagatcaagtacagacataatcccacttgttagccaatttgccataaaattcccttagaaacgaaaatttccactgtacaagtagcagattttttttactccatttccacgatattttgcttgttagtggtaagctgcttaatgatgatagtgtgcaagttgccactcttcaaagtggttctttggattctactatgtgttctcttgcctaattgggttctatattgagattactttctctatgttttttttggaggaaaaaaaagaatacactctctttattcattctgtgtaaggataatattatgtgtgcatggttgcttttg
More
|
||||||||||
| CDS seq | atgcgtgcgggcgacatgccggggcggggggctcgccgtcgcccggatctcaccctcccgatgccgcagcgcgacgcgccgacgtcgctcgccgtgccgctcccgctcccgccgccggcgacgacgacgacgtccgcgcctcccgcgggaggggcgatgcacccaccggcgtcggcgggggccgcgccgccgccgccgctggaggagctggaacgggtgaggcgggtggggagcggggcaggggggacggtgtggatggtgcgccaccgcggcacgggcaaggagtacgcgctcaaggtgctctacggcaaccacgacgacgcggtgcggcgccagatcgcgcgcgagatcgccatcctccgcaccgccgagcacccggcggtggtgcggtgccacggcatgtacgagcgcggaggcgagctgcagatcctgctcgagtacatggacggcgggtccctcgacggccgccgcatcgccgacgagcggttcctcgccgatgtcgcgcgccaggtgctctccgggatcgcctacctccaccgccgccacatcgtccaccgcgacatcaagccgtccaacctcctcatcgactccgcgcgccgcgtcaagatcgccgacttcggcgtcggccgcatcctcaaccagaccatggatccctgcaactcctccgtcggcaccatcgcctacatgagccccgagcgcatcaacaccgacctcaacgacggcgcctacgatggctacgccggcgacatctggagcttcggcctcagcatcctagagttttacatgggaaaattccccttcggtgagaatcttggcaagcagggtgactgggccgcgctcatgtgcgccatctgctactccgaccctcccgagccgcccgccgccgtctcgccggagttcagaagcttcgtcggctactgccttcagaagaatccggcgaagcggccgtccgccgcgcagctgatgcagcacccgttcgtcgccggaccgcagccacagccactcgccgccccgccgccatcgtcgtga
More
|
||||||||||
| Protein seq | MRAGDMPGRGARRRPDLTLPMPQRDAPTSLAVPLPLPPPATTTTSAPPAGGAMHPPASAGAAPPPPLEELERVRRVGSGAGGTVWMVRHRGTGKEYALKVLYGNHDDAVRRQIAREIAILRTAEHPAVVRCHGMYERGGELQILLEYMDGGSLDGRRIADERFLADVARQVLSGIAYLHRRHIVHRDIKPSNLLIDSARRVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDLNDGAYDGYAGDIWSFGLSILEFYMGKFPFGENLGKQGDWAALMCAICYSDPPEPPAAVSPEFRSFVGYCLQKNPAKRPSAAQLMQHPFVAGPQPQPLAAPPPSS |
||||||||||
| Function | Mitogen-activated protein kinase kinase 4 [UniProtKB/Swiss-Prot:O80397] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0006180 | OsCMeo_06g0006180.01 | Chr06 | 4603876 | 4605559 | + | NAM | ||
| CDS seq | atgcgtgcgggcgacatgccggggcggggggctcgccgtcgcccggatctcaccctcccgatgccgcagcgcgacgcgccgacgtcgctcgccgtgccgctcccgctcccgccgccggcgacgacgacgacgtccgcgcctcccgcgggaggggcgatgcacccaccggcgtcggcgggggccgcgccgccgccgccgctggaggagctggaacgggtgaggcgggtggggagcggggcaggggggacggtgtggatggtgcgccaccgcggcacgggcaaggagtacgcgctcaaggtgctctacggcaaccacgacgacgcggtgcggcgccagatcgcgcgcgagatcgccatcctccgcaccgccgagcacccggcggtggtgcggtgccacggcatgtacgagcgcggaggcgagctgcagatcctgctcgagtacatggacggcgggtccctcgacggccgccgcatcgccgacgagcggttcctcgccgatgtcgcgcgccaggtgctctccgggatcgcctacctccaccgccgccacatcgtccaccgcgacatcaagccgtccaacctcctcatcgactccgcgcgccgcgtcaagatcgccgacttcggcgtcggccgcatcctcaaccagaccatggatccctgcaactcctccgtcggcaccatcgcctacatgagccccgagcgcatcaacaccgacctcaacgacggcgcctacgatggctacgccggcgacatctggagcttcggcctcagcatcctagagttttacatgggaaaattccccttcggtgagaatcttggcaagcagggtgactgggccgcgctcatgtgcgccatctgctactccgaccctcccgagccgcccgccgccgtctcgccggagttcagaagcttcgtcggctactgccttcagaagaatccggcgaagcggccgtccgccgcgcagctgatgcagcacccgttcgtcgccggaccgcagccacagccactcgccgccccgccgccatcgtcgtga
More
|
|||||||
| Protein seq | MRAGDMPGRGARRRPDLTLPMPQRDAPTSLAVPLPLPPPATTTTSAPPAGGAMHPPASAGAAPPPPLEELERVRRVGSGAGGTVWMVRHRGTGKEYALKVLYGNHDDAVRRQIAREIAILRTAEHPAVVRCHGMYERGGELQILLEYMDGGSLDGRRIADERFLADVARQVLSGIAYLHRRHIVHRDIKPSNLLIDSARRVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDLNDGAYDGYAGDIWSFGLSILEFYMGKFPFGENLGKQGDWAALMCAICYSDPPEPPAAVSPEFRSFVGYCLQKNPAKRPSAAQLMQHPFVAGPQPQPLAAPPPSS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.536129 | 3.976112 | 4.281904 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0191300 | RBH | 1.106457 | 1.454894 | 1.939912 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09180 | RBH | 0.717455 | 0.938273 | 0.478824 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0191300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006360 | RBH | 0.808074 | 4.945493 | 2.434179 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006190 | RBH | 0.085020 | 3.556233 | 0.844584 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036310 | RBH | 0.672731 | 1.188414 | 2.467009 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006310 | RBH | 0.398997 | 0.549033 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006190 | RBH | 1.808166 | 4.095384 | 4.056999 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0077600 | RBH | 1.91055 | 8.295988 | 2.4905715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006060 | RBH | 0.498395 | 0.535961 | 0.703066 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0077500 | RBH | 2.43016 | 7.65609 | 3.095166 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006420 | RBH | 0.0 | 0.160832 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006290 | RBH | 0.427919 | 5.298010 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006300 | RBH | 4.677163 | 16.660059 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006350 | RBH | 0.445513 | 0.958718 | 0.522499 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006200 | RBH | 0.645159 | 10.051843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006030 | RBH | 0.641362 | 4.406711 | 0.661198 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006300 | RBH | 3.311486 | 6.910927 | 4.545316 |
