Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0005860 | OGI:06012340 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:4274882-4276912 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCACCCGCCGGCCGCGCATTCCGTCGAGCACCTGGCGCGCGCCTCTGCTCCCCGCGACGCCTCCGCCCTCCTCCTCCTCCTCCGCCTCGTCCCGGCATGCGGAACCCTCCGCTCCCTTCGCGCGCTCCACGGGCGCCTCCTCCTCCGCACGAGCGGCCTCCTCCGCGGCATCCGCGCCCGCACCAAGCTGCTCAGCTGCTACGCGGCGCTCGGCGACCTCGCCTCCGCGCGCGGGGTGCTCGACGGGACGCCCCGCCCGGACTCGTACGCCTACAGGGTCATGCTCGGGTGGCTCGTCGGCGCGGGGAGCCACGCCGACGCCGTCGCGCTCCACCGGGACATGCGGCGGCGGTGCCCCGCGGCGGCGCGGGCCGACGTCGTGCTCTCCCTCGCGCTCAAGGCCTGCGTCAGGTCGGCGGACTTCCGGTACGGGAGGAGGCTGCACTGCGACGTCGTCAAGGCCGGCGGTGCGGATGGATTCGTGATGAACAGCTTGGTCGACATGTATGCCAAATCTGGGGACCTGGAGAACGCCCGTAAGGTGTTCGACAGAGTTCCTGAACGGAATGTGGTGTCGTGGACGTCGATGCTGAGCGGGTCCATCCAGAATGGCTTCGCTGAAGAAGGATTGGTGCTGTTCAACGAAATGAGGAAAGACAATGTGCATCCGAGTGAGTACACGATGGTGAGTGTTCTTGCGGCTTGCGCCATGCTTGGTTGTTTGCACCAAGGGAGATGGATCCATGGATCTGTGATCAAAGACGGGTTATCAACTAATTCTTTCATCAGTGCCTCTCTGCTAGATATGTATGCCAAGTGCGAGAAATTAGAGGATGCTCGACGTGTGTTTGATGAGCTCGAGTTTGTTGACATTGTTTTGTGGACGGCAATGATTGTTGGATACACACAGAATAAGAGCCCTCTTGATGCACTACAGCTTTTTCTTCACAAGAAATTCGTGAGCATTGTTCCCAATTCAGTTACCATAGCCACTGTTATTTCCGCTTCTGCTCAGTTACACCACTTACCCCTGGGAAGATCTATTCATGCTATAGGGGTTAAGTTGGGAACGATGGAATCTGATGTGGTCAGGAATGCACTTGTCGATATGTATGCAAAATGTCAAGCTTTGCCAGAAGCTAACAGCATATTTGGAAGGATTTTGATCAAGGATGTTGTTGCATGGAATTCAATGATGGCAGGCTACTCTGAGAATGGGATGGCCAATGAATCACTGGTACTATTCAACCGGATGAGGATGCAGGGTATATCACCTGATGCCATCTCTGTGGTGAATGCCTTGTCAGCTTGCGTATGCTTGGCAGATCTGCATATTGGTAAAGGTTTTCATACTTATGCGATAAAATATGCATTTATGTCCAATATCTATGTCAATACTGCTCTGCTGAACCTGTACAGCAAGTGTGCTGATCTCCCATCTGCTCAGAGGGTTTTCAATGATATGACTGACCGTAATTCTGTCACTTGGTCTGCAATGATTGGCGGTTATGGCATGCAGGGTGATTCAGCTGGTTCTATCGATCTTTTCAATGAAATGCTGAAAGACAATATCCACCCAACTGAAGTAGTGTTCACAAGCATACTTTCCGCTTGCAGCCATACTGGAATGGTTACTGCCGGAAAGGAGTATTTTGATAGCATGGCACGACAATTTAACATCACCCCTTCCATGAAGCACTATGCATGTATGGTTGATGTGATGACCCGTGCCGGAAATCTGGAGGAAGCATTGGAGTTCATACAGAATATGCCAATCAAAGCAGGCATTAGTGTCTGGGGATCCTTTCTCCATGGGTGCAAGCTACATTCCAGGTTAGAGTTTGGAGAAGAAGCCATCAAGAAGATGGCGGCACTTCATCCTGAAACACCAGACTTTTATGTGCTGATGTCCAACTTGTACACCTCATATGGAAGGTGGGATAAATCTCAAACCATCAGGAGATGGATGCAGGAACAGGGACTCGTGAAACTGCCTGGATGCAGCTCCGTGGGGCATGAAAATGGATGA
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| CDS seq | ATGCACCCGCCGGCCGCGCATTCCGTCGAGCACCTGGCGCGCGCCTCTGCTCCCCGCGACGCCTCCGCCCTCCTCCTCCTCCTCCGCCTCGTCCCGGCATGCGGAACCCTCCGCTCCCTTCGCGCGCTCCACGGGCGCCTCCTCCTCCGCACGAGCGGCCTCCTCCGCGGCATCCGCGCCCGCACCAAGCTGCTCAGCTGCTACGCGGCGCTCGGCGACCTCGCCTCCGCGCGCGGGGTGCTCGACGGGACGCCCCGCCCGGACTCGTACGCCTACAGGGTCATGCTCGGGTGGCTCGTCGGCGCGGGGAGCCACGCCGACGCCGTCGCGCTCCACCGGGACATGCGGCGGCGGTGCCCCGCGGCGGCGCGGGCCGACGTCGTGCTCTCCCTCGCGCTCAAGGCCTGCGTCAGGTCGGCGGACTTCCGGTACGGGAGGAGGCTGCACTGCGACGTCGTCAAGGCCGGCGGTGCGGATGGATTCGTGATGAACAGCTTGGTCGACATGTATGCCAAATCTGGGGACCTGGAGAACGCCCGTAAGGTGTTCGACAGAGTTCCTGAACGGAATGTGGTGTCGTGGACGTCGATGCTGAGCGGGTCCATCCAGAATGGCTTCGCTGAAGAAGGATTGGTGCTGTTCAACGAAATGAGGAAAGACAATGTGCATCCGAGTGAGTACACGATGGTGAGTGTTCTTGCGGCTTGCGCCATGCTTGGTTGTTTGCACCAAGGGAGATGGATCCATGGATCTGTGATCAAAGACGGGTTATCAACTAATTCTTTCATCAGTGCCTCTCTGCTAGATATGTATGCCAAGTGCGAGAAATTAGAGGATGCTCGACGTGTGTTTGATGAGCTCGAGTTTGTTGACATTGTTTTGTGGACGGCAATGATTGTTGGATACACACAGAATAAGAGCCCTCTTGATGCACTACAGCTTTTTCTTCACAAGAAATTCGTGAGCATTGTTCCCAATTCAGTTACCATAGCCACTGTTATTTCCGCTTCTGCTCAGTTACACCACTTACCCCTGGGAAGATCTATTCATGCTATAGGGGTTAAGTTGGGAACGATGGAATCTGATGTGGTCAGGAATGCACTTGTCGATATGTATGCAAAATGTCAAGCTTTGCCAGAAGCTAACAGCATATTTGGAAGGATTTTGATCAAGGATGTTGTTGCATGGAATTCAATGATGGCAGGCTACTCTGAGAATGGGATGGCCAATGAATCACTGGTACTATTCAACCGGATGAGGATGCAGGGTATATCACCTGATGCCATCTCTGTGGTGAATGCCTTGTCAGCTTGCGTATGCTTGGCAGATCTGCATATTGGTAAAGGTTTTCATACTTATGCGATAAAATATGCATTTATGTCCAATATCTATGTCAATACTGCTCTGCTGAACCTGTACAGCAAGTGTGCTGATCTCCCATCTGCTCAGAGGGTTTTCAATGATATGACTGACCGTAATTCTGTCACTTGGTCTGCAATGATTGGCGGTTATGGCATGCAGGGTGATTCAGCTGGTTCTATCGATCTTTTCAATGAAATGCTGAAAGACAATATCCACCCAACTGAAGTAGTGTTCACAAGCATACTTTCCGCTTGCAGCCATACTGGAATGGTTACTGCCGGAAAGGAGTATTTTGATAGCATGGCACGACAATTTAACATCACCCCTTCCATGAAGCACTATGCATGTATGGTTGATGTGATGACCCGTGCCGGAAATCTGGAGGAAGCATTGGAGTTCATACAGAATATGCCAATCAAAGCAGGCATTAGTGTCTGGGGATCCTTTCTCCATGGGTGCAAGCTACATTCCAGGTTAGAGTTTGGAGAAGAAGCCATCAAGAAGATGGCGGCACTTCATCCTGAAACACCAGACTTTTATGTGCTGATGTCCAACTTGTACACCTCATATGGAAGGTGGGATAAATCTCAAACCATCAGGAGATGGATGCAGGAACAGGGACTCGTGAAACTGCCTGGATGCAGCTCCGTGGGGCATGAAAATGGATGA
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| Protein seq | MHPPAAHSVEHLARASAPRDASALLLLLRLVPACGTLRSLRALHGRLLLRTSGLLRGIRARTKLLSCYAALGDLASARGVLDGTPRPDSYAYRVMLGWLVGAGSHADAVALHRDMRRRCPAAARADVVLSLALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKSGDLENARKVFDRVPERNVVSWTSMLSGSIQNGFAEEGLVLFNEMRKDNVHPSEYTMVSVLAACAMLGCLHQGRWIHGSVIKDGLSTNSFISASLLDMYAKCEKLEDARRVFDELEFVDIVLWTAMIVGYTQNKSPLDALQLFLHKKFVSIVPNSVTIATVISASAQLHHLPLGRSIHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKDNIHPTEVVFTSILSACSHTGMVTAGKEYFDSMARQFNITPSMKHYACMVDVMTRAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSVGHENG |
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| Function | Pentatricopeptide repeat-containing protein At2g03380, mitochondrial [UniProtKB/Swiss-Prot:Q9ZQ74] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0005860 | OsCMeo_06g0005860.01 | Chr06 | 4274882 | 4276912 | + | NAM | ||
| CDS seq | ATGCACCCGCCGGCCGCGCATTCCGTCGAGCACCTGGCGCGCGCCTCTGCTCCCCGCGACGCCTCCGCCCTCCTCCTCCTCCTCCGCCTCGTCCCGGCATGCGGAACCCTCCGCTCCCTTCGCGCGCTCCACGGGCGCCTCCTCCTCCGCACGAGCGGCCTCCTCCGCGGCATCCGCGCCCGCACCAAGCTGCTCAGCTGCTACGCGGCGCTCGGCGACCTCGCCTCCGCGCGCGGGGTGCTCGACGGGACGCCCCGCCCGGACTCGTACGCCTACAGGGTCATGCTCGGGTGGCTCGTCGGCGCGGGGAGCCACGCCGACGCCGTCGCGCTCCACCGGGACATGCGGCGGCGGTGCCCCGCGGCGGCGCGGGCCGACGTCGTGCTCTCCCTCGCGCTCAAGGCCTGCGTCAGGTCGGCGGACTTCCGGTACGGGAGGAGGCTGCACTGCGACGTCGTCAAGGCCGGCGGTGCGGATGGATTCGTGATGAACAGCTTGGTCGACATGTATGCCAAATCTGGGGACCTGGAGAACGCCCGTAAGGTGTTCGACAGAGTTCCTGAACGGAATGTGGTGTCGTGGACGTCGATGCTGAGCGGGTCCATCCAGAATGGCTTCGCTGAAGAAGGATTGGTGCTGTTCAACGAAATGAGGAAAGACAATGTGCATCCGAGTGAGTACACGATGGTGAGTGTTCTTGCGGCTTGCGCCATGCTTGGTTGTTTGCACCAAGGGAGATGGATCCATGGATCTGTGATCAAAGACGGGTTATCAACTAATTCTTTCATCAGTGCCTCTCTGCTAGATATGTATGCCAAGTGCGAGAAATTAGAGGATGCTCGACGTGTGTTTGATGAGCTCGAGTTTGTTGACATTGTTTTGTGGACGGCAATGATTGTTGGATACACACAGAATAAGAGCCCTCTTGATGCACTACAGCTTTTTCTTCACAAGAAATTCGTGAGCATTGTTCCCAATTCAGTTACCATAGCCACTGTTATTTCCGCTTCTGCTCAGTTACACCACTTACCCCTGGGAAGATCTATTCATGCTATAGGGGTTAAGTTGGGAACGATGGAATCTGATGTGGTCAGGAATGCACTTGTCGATATGTATGCAAAATGTCAAGCTTTGCCAGAAGCTAACAGCATATTTGGAAGGATTTTGATCAAGGATGTTGTTGCATGGAATTCAATGATGGCAGGCTACTCTGAGAATGGGATGGCCAATGAATCACTGGTACTATTCAACCGGATGAGGATGCAGGGTATATCACCTGATGCCATCTCTGTGGTGAATGCCTTGTCAGCTTGCGTATGCTTGGCAGATCTGCATATTGGTAAAGGTTTTCATACTTATGCGATAAAATATGCATTTATGTCCAATATCTATGTCAATACTGCTCTGCTGAACCTGTACAGCAAGTGTGCTGATCTCCCATCTGCTCAGAGGGTTTTCAATGATATGACTGACCGTAATTCTGTCACTTGGTCTGCAATGATTGGCGGTTATGGCATGCAGGGTGATTCAGCTGGTTCTATCGATCTTTTCAATGAAATGCTGAAAGACAATATCCACCCAACTGAAGTAGTGTTCACAAGCATACTTTCCGCTTGCAGCCATACTGGAATGGTTACTGCCGGAAAGGAGTATTTTGATAGCATGGCACGACAATTTAACATCACCCCTTCCATGAAGCACTATGCATGTATGGTTGATGTGATGACCCGTGCCGGAAATCTGGAGGAAGCATTGGAGTTCATACAGAATATGCCAATCAAAGCAGGCATTAGTGTCTGGGGATCCTTTCTCCATGGGTGCAAGCTACATTCCAGGTTAGAGTTTGGAGAAGAAGCCATCAAGAAGATGGCGGCACTTCATCCTGAAACACCAGACTTTTATGTGCTGATGTCCAACTTGTACACCTCATATGGAAGGTGGGATAAATCTCAAACCATCAGGAGATGGATGCAGGAACAGGGACTCGTGAAACTGCCTGGATGCAGCTCCGTGGGGCATGAAAATGGATGA
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| Protein seq | MHPPAAHSVEHLARASAPRDASALLLLLRLVPACGTLRSLRALHGRLLLRTSGLLRGIRARTKLLSCYAALGDLASARGVLDGTPRPDSYAYRVMLGWLVGAGSHADAVALHRDMRRRCPAAARADVVLSLALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKSGDLENARKVFDRVPERNVVSWTSMLSGSIQNGFAEEGLVLFNEMRKDNVHPSEYTMVSVLAACAMLGCLHQGRWIHGSVIKDGLSTNSFISASLLDMYAKCEKLEDARRVFDELEFVDIVLWTAMIVGYTQNKSPLDALQLFLHKKFVSIVPNSVTIATVISASAQLHHLPLGRSIHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKDNIHPTEVVFTSILSACSHTGMVTAGKEYFDSMARQFNITPSMKHYACMVDVMTRAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSVGHENG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.955975 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0185700 | RBH | 0.242744 | 0.168376 | 0.200645 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08650 | RBH | 0.161602 | 0.111485 | 0.050846 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0185700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006050 | RBH | 0.281715 | 0.0 | 0.268961 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005890 | RBH | 0.0 | 0.0 | 0.471258 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036630 | SBH | 0.303201 | 0.611205 | 0.948608 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006060 | RBH | 0.113128 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005930 | RBH | 1.288572 | 1.666416 | 0.486694 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0073700 | RBH | 1.0606085 | 1.962843 | 0.9497505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005820 | RBH | 0.0 | 0.078975 | 0.088813 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0073100 | RBH | 1.4056285 | 1.9977595 | 5.9786345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006120 | RBH | 0.0 | 0.059827 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005980 | RBH | 0.159395 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006020 | RBH | 0.090756 | 0.048262 | 0.168896 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005870 | RBH | 0.058132 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005730 | RBH | 0.087552 | 0.863729 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005980 | RBH | 0.0 | 0.802718 | 0.194095 |
